Experiment: 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25195 and AO353_25200 are separated by 18 nucleotides AO353_25200 and AO353_25205 are separated by 391 nucleotides AO353_25205 and AO353_25210 are separated by 44 nucleotides
AO353_25195: AO353_25195 - NAD(P)H:quinone oxidoreductase, at 5,559,425 to 5,560,027
_25195
AO353_25200: AO353_25200 - glutathione-dependent formaldehyde-activating protein, at 5,560,046 to 5,560,624
_25200
AO353_25205: AO353_25205 - permease DsdX, at 5,561,016 to 5,562,359
_25205
AO353_25210: AO353_25210 - D-serine ammonia-lyase (EC 4.3.1.18) <small>(from data)</small>, at 5,562,404 to 5,563,756
_25210
Position (kb) 5561
5562
5563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5560.085 kb on - strand at 5560.103 kb on - strand at 5560.161 kb on + strand, within AO353_25200 at 5560.161 kb on + strand, within AO353_25200 at 5560.161 kb on + strand, within AO353_25200 at 5560.161 kb on + strand, within AO353_25200 at 5560.161 kb on + strand at 5560.162 kb on - strand, within AO353_25200 at 5560.162 kb on - strand, within AO353_25200 at 5560.162 kb on - strand, within AO353_25200 at 5560.162 kb on - strand, within AO353_25200 at 5560.162 kb on - strand, within AO353_25200 at 5560.162 kb on - strand, within AO353_25200 at 5560.245 kb on + strand, within AO353_25200 at 5560.245 kb on + strand, within AO353_25200 at 5560.245 kb on + strand, within AO353_25200 at 5560.248 kb on + strand, within AO353_25200 at 5560.249 kb on - strand, within AO353_25200 at 5560.249 kb on - strand, within AO353_25200 at 5560.259 kb on - strand, within AO353_25200 at 5560.388 kb on + strand at 5560.388 kb on + strand, within AO353_25200 at 5560.544 kb on + strand, within AO353_25200 at 5560.545 kb on - strand, within AO353_25200 at 5560.545 kb on - strand, within AO353_25200 at 5560.754 kb on + strand at 5560.755 kb on - strand at 5560.755 kb on - strand at 5560.755 kb on - strand at 5560.755 kb on - strand at 5560.755 kb on - strand at 5560.755 kb on - strand at 5560.770 kb on + strand at 5560.770 kb on + strand at 5560.771 kb on - strand at 5560.771 kb on - strand at 5560.771 kb on - strand at 5560.800 kb on + strand at 5560.801 kb on - strand at 5560.801 kb on - strand at 5560.841 kb on + strand at 5560.841 kb on + strand at 5560.842 kb on - strand at 5560.853 kb on + strand at 5560.853 kb on + strand at 5560.853 kb on + strand at 5560.854 kb on - strand at 5560.863 kb on + strand at 5560.863 kb on + strand at 5560.863 kb on + strand at 5560.864 kb on - strand at 5560.878 kb on - strand at 5560.878 kb on - strand at 5560.886 kb on - strand at 5560.887 kb on - strand at 5560.905 kb on + strand at 5560.905 kb on + strand at 5560.905 kb on + strand at 5560.906 kb on - strand at 5560.906 kb on - strand at 5560.906 kb on - strand at 5560.906 kb on - strand at 5560.906 kb on - strand at 5560.906 kb on - strand at 5560.929 kb on + strand at 5560.936 kb on + strand at 5560.936 kb on + strand at 5560.936 kb on + strand at 5560.936 kb on + strand at 5560.936 kb on + strand at 5560.936 kb on + strand at 5560.936 kb on + strand at 5560.936 kb on + strand at 5560.936 kb on + strand at 5560.937 kb on - strand at 5560.937 kb on - strand at 5560.937 kb on - strand at 5560.937 kb on - strand at 5560.937 kb on - strand at 5560.937 kb on - strand at 5560.937 kb on - strand at 5560.937 kb on - strand at 5560.939 kb on - strand at 5560.939 kb on - strand at 5560.951 kb on + strand at 5560.969 kb on + strand at 5560.970 kb on - strand at 5560.970 kb on - strand at 5560.976 kb on - strand at 5560.976 kb on - strand at 5560.976 kb on - strand at 5561.024 kb on + strand at 5561.024 kb on + strand at 5561.024 kb on + strand at 5561.024 kb on + strand at 5561.025 kb on - strand at 5561.025 kb on - strand at 5561.028 kb on + strand at 5561.028 kb on + strand at 5561.029 kb on - strand at 5561.069 kb on - strand at 5561.129 kb on - strand at 5561.200 kb on + strand, within AO353_25205 at 5561.201 kb on - strand, within AO353_25205 at 5561.201 kb on - strand, within AO353_25205 at 5561.201 kb on - strand, within AO353_25205 at 5561.276 kb on + strand, within AO353_25205 at 5561.276 kb on + strand, within AO353_25205 at 5561.276 kb on + strand, within AO353_25205 at 5561.276 kb on + strand, within AO353_25205 at 5561.277 kb on - strand, within AO353_25205 at 5561.354 kb on + strand at 5561.355 kb on - strand, within AO353_25205 at 5561.403 kb on + strand, within AO353_25205 at 5561.403 kb on + strand, within AO353_25205 at 5561.403 kb on + strand, within AO353_25205 at 5561.404 kb on - strand, within AO353_25205 at 5561.404 kb on - strand, within AO353_25205 at 5561.404 kb on - strand at 5561.404 kb on - strand, within AO353_25205 at 5561.439 kb on + strand, within AO353_25205 at 5561.439 kb on + strand, within AO353_25205 at 5561.440 kb on - strand, within AO353_25205 at 5561.449 kb on + strand, within AO353_25205 at 5561.565 kb on - strand, within AO353_25205 at 5561.680 kb on + strand, within AO353_25205 at 5561.680 kb on + strand, within AO353_25205 at 5561.681 kb on - strand, within AO353_25205 at 5561.681 kb on - strand, within AO353_25205 at 5561.709 kb on - strand, within AO353_25205 at 5561.869 kb on + strand, within AO353_25205 at 5561.990 kb on - strand, within AO353_25205 at 5562.116 kb on + strand, within AO353_25205 at 5562.117 kb on - strand, within AO353_25205 at 5562.136 kb on + strand, within AO353_25205 at 5562.136 kb on + strand, within AO353_25205 at 5562.136 kb on + strand, within AO353_25205 at 5562.137 kb on - strand, within AO353_25205 at 5562.137 kb on - strand, within AO353_25205 at 5562.137 kb on - strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.140 kb on + strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.141 kb on - strand, within AO353_25205 at 5562.162 kb on + strand, within AO353_25205 at 5562.162 kb on + strand, within AO353_25205 at 5562.163 kb on - strand, within AO353_25205 at 5562.163 kb on - strand, within AO353_25205 at 5562.163 kb on - strand, within AO353_25205 at 5562.252 kb on + strand at 5562.252 kb on + strand at 5562.305 kb on - strand at 5562.328 kb on + strand at 5562.328 kb on + strand at 5562.329 kb on - strand at 5562.329 kb on - strand at 5562.332 kb on + strand at 5562.332 kb on + strand at 5562.332 kb on + strand at 5562.332 kb on + strand at 5562.333 kb on - strand at 5562.333 kb on - strand at 5562.333 kb on - strand at 5562.340 kb on + strand at 5562.340 kb on + strand at 5562.340 kb on + strand at 5562.340 kb on + strand at 5562.341 kb on - strand at 5562.341 kb on - strand at 5562.341 kb on - strand at 5562.355 kb on + strand at 5562.356 kb on - strand at 5562.379 kb on + strand at 5562.379 kb on + strand at 5562.396 kb on + strand at 5562.396 kb on + strand at 5562.396 kb on + strand at 5562.397 kb on - strand at 5562.397 kb on - strand at 5562.397 kb on - strand at 5562.404 kb on - strand at 5562.415 kb on + strand at 5562.416 kb on - strand at 5562.424 kb on - strand at 5562.434 kb on + strand at 5562.499 kb on + strand at 5562.499 kb on + strand at 5562.500 kb on - strand at 5562.500 kb on - strand at 5562.531 kb on + strand at 5562.531 kb on + strand at 5562.532 kb on - strand at 5562.532 kb on - strand at 5562.532 kb on - strand at 5562.590 kb on + strand, within AO353_25210 at 5562.590 kb on + strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.591 kb on - strand, within AO353_25210 at 5562.742 kb on + strand, within AO353_25210 at 5562.743 kb on - strand, within AO353_25210 at 5562.838 kb on + strand, within AO353_25210 at 5562.842 kb on + strand, within AO353_25210 at 5562.842 kb on + strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.843 kb on - strand, within AO353_25210 at 5562.888 kb on - strand at 5562.924 kb on + strand, within AO353_25210 at 5563.006 kb on + strand, within AO353_25210 at 5563.012 kb on - strand, within AO353_25210 at 5563.012 kb on - strand, within AO353_25210 at 5563.041 kb on - strand, within AO353_25210 at 5563.053 kb on - strand, within AO353_25210 at 5563.106 kb on + strand, within AO353_25210 at 5563.107 kb on - strand, within AO353_25210 at 5563.113 kb on + strand, within AO353_25210 at 5563.113 kb on + strand, within AO353_25210 at 5563.229 kb on + strand, within AO353_25210 at 5563.230 kb on - strand, within AO353_25210 at 5563.355 kb on + strand, within AO353_25210 at 5563.356 kb on - strand, within AO353_25210
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 15 mM remove 5,560,085 - +0.2 5,560,103 - -0.1 5,560,161 + AO353_25200 0.20 -0.0 5,560,161 + AO353_25200 0.20 -0.4 5,560,161 + AO353_25200 0.20 -1.0 5,560,161 + AO353_25200 0.20 +1.2 5,560,161 + +0.6 5,560,162 - AO353_25200 0.20 +1.9 5,560,162 - AO353_25200 0.20 +0.0 5,560,162 - AO353_25200 0.20 -2.0 5,560,162 - AO353_25200 0.20 +0.6 5,560,162 - AO353_25200 0.20 +3.0 5,560,162 - AO353_25200 0.20 +0.6 5,560,245 + AO353_25200 0.34 +1.4 5,560,245 + AO353_25200 0.34 -0.8 5,560,245 + AO353_25200 0.34 -0.4 5,560,248 + AO353_25200 0.35 +1.2 5,560,249 - AO353_25200 0.35 -1.3 5,560,249 - AO353_25200 0.35 -0.0 5,560,259 - AO353_25200 0.37 +2.2 5,560,388 + -1.0 5,560,388 + AO353_25200 0.59 +1.1 5,560,544 + AO353_25200 0.86 +0.2 5,560,545 - AO353_25200 0.86 -0.4 5,560,545 - AO353_25200 0.86 +0.5 5,560,754 + +0.9 5,560,755 - -1.2 5,560,755 - +1.4 5,560,755 - +0.0 5,560,755 - -0.4 5,560,755 - +0.6 5,560,755 - -3.0 5,560,770 + +2.6 5,560,770 + +0.6 5,560,771 - -0.8 5,560,771 - -1.2 5,560,771 - +0.6 5,560,800 + -0.5 5,560,801 - +2.2 5,560,801 - -0.1 5,560,841 + -0.5 5,560,841 + +1.0 5,560,842 - -0.6 5,560,853 + +1.0 5,560,853 + -1.7 5,560,853 + -1.5 5,560,854 - -0.4 5,560,863 + -0.2 5,560,863 + -1.1 5,560,863 + +0.4 5,560,864 - -0.8 5,560,878 - +0.6 5,560,878 - -0.7 5,560,886 - +0.6 5,560,887 - +1.6 5,560,905 + -1.7 5,560,905 + +0.6 5,560,905 + +0.5 5,560,906 - -1.0 5,560,906 - +0.6 5,560,906 - -1.4 5,560,906 - -0.4 5,560,906 - -1.4 5,560,906 - -0.6 5,560,929 + +2.2 5,560,936 + -0.4 5,560,936 + +1.6 5,560,936 + +0.6 5,560,936 + +0.6 5,560,936 + -0.1 5,560,936 + +0.7 5,560,936 + +1.6 5,560,936 + +0.0 5,560,936 + -2.0 5,560,937 - -1.4 5,560,937 - -1.0 5,560,937 - +0.0 5,560,937 - -2.0 5,560,937 - -0.6 5,560,937 - +0.4 5,560,937 - +0.0 5,560,937 - -0.2 5,560,939 - -0.0 5,560,939 - +0.3 5,560,951 + +0.2 5,560,969 + +1.4 5,560,970 - -0.1 5,560,970 - +0.0 5,560,976 - +0.0 5,560,976 - +0.6 5,560,976 - +0.4 5,561,024 + -1.3 5,561,024 + -0.2 5,561,024 + -1.0 5,561,024 + +0.6 5,561,025 - -0.4 5,561,025 - -0.4 5,561,028 + +0.4 5,561,028 + +0.1 5,561,029 - -2.0 5,561,069 - -1.0 5,561,129 - -0.4 5,561,200 + AO353_25205 0.14 +0.0 5,561,201 - AO353_25205 0.14 -0.4 5,561,201 - AO353_25205 0.14 -2.4 5,561,201 - AO353_25205 0.14 +1.6 5,561,276 + AO353_25205 0.19 +0.2 5,561,276 + AO353_25205 0.19 +0.0 5,561,276 + AO353_25205 0.19 +1.1 5,561,276 + AO353_25205 0.19 +1.4 5,561,277 - AO353_25205 0.19 +0.6 5,561,354 + +0.6 5,561,355 - AO353_25205 0.25 -0.4 5,561,403 + AO353_25205 0.29 +0.3 5,561,403 + AO353_25205 0.29 +0.4 5,561,403 + AO353_25205 0.29 -1.1 5,561,404 - AO353_25205 0.29 +0.3 5,561,404 - AO353_25205 0.29 +1.2 5,561,404 - -0.4 5,561,404 - AO353_25205 0.29 -0.2 5,561,439 + AO353_25205 0.31 -1.0 5,561,439 + AO353_25205 0.31 +1.4 5,561,440 - AO353_25205 0.32 -0.1 5,561,449 + AO353_25205 0.32 +0.3 5,561,565 - AO353_25205 0.41 -1.4 5,561,680 + AO353_25205 0.49 -2.2 5,561,680 + AO353_25205 0.49 -0.2 5,561,681 - AO353_25205 0.49 +0.6 5,561,681 - AO353_25205 0.49 +1.5 5,561,709 - AO353_25205 0.52 -1.0 5,561,869 + AO353_25205 0.63 -1.3 5,561,990 - AO353_25205 0.72 -2.8 5,562,116 + AO353_25205 0.82 -2.2 5,562,117 - AO353_25205 0.82 -0.2 5,562,136 + AO353_25205 0.83 +0.3 5,562,136 + AO353_25205 0.83 +2.2 5,562,136 + AO353_25205 0.83 -0.5 5,562,137 - AO353_25205 0.83 +1.6 5,562,137 - AO353_25205 0.83 -1.7 5,562,137 - AO353_25205 0.83 -1.0 5,562,140 + AO353_25205 0.84 +1.1 5,562,140 + +2.0 5,562,140 + AO353_25205 0.84 -1.4 5,562,140 + AO353_25205 0.84 +1.2 5,562,140 + AO353_25205 0.84 -0.5 5,562,140 + AO353_25205 0.84 -1.4 5,562,140 + AO353_25205 0.84 +0.6 5,562,141 - AO353_25205 0.84 -1.7 5,562,141 - AO353_25205 0.84 +0.6 5,562,141 - AO353_25205 0.84 +0.1 5,562,141 - AO353_25205 0.84 -1.0 5,562,141 - AO353_25205 0.84 -2.3 5,562,162 + AO353_25205 0.85 +0.6 5,562,162 + AO353_25205 0.85 -0.8 5,562,163 - AO353_25205 0.85 -0.4 5,562,163 - AO353_25205 0.85 -2.7 5,562,163 - AO353_25205 0.85 +0.0 5,562,252 + +0.0 5,562,252 + +0.6 5,562,305 - +1.4 5,562,328 + -0.2 5,562,328 + -0.5 5,562,329 - -0.2 5,562,329 - -0.5 5,562,332 + -0.0 5,562,332 + -0.3 5,562,332 + +0.6 5,562,332 + +0.0 5,562,333 - +0.3 5,562,333 - +0.0 5,562,333 - +1.4 5,562,340 + -2.4 5,562,340 + +0.6 5,562,340 + +0.2 5,562,340 + +0.6 5,562,341 - -0.1 5,562,341 - -0.8 5,562,341 - +0.6 5,562,355 + -0.8 5,562,356 - -0.9 5,562,379 + -0.4 5,562,379 + +0.0 5,562,396 + +0.2 5,562,396 + +0.0 5,562,396 + +0.0 5,562,397 - +0.4 5,562,397 - +0.9 5,562,397 - -0.1 5,562,404 - -1.4 5,562,415 + -2.0 5,562,416 - -1.5 5,562,424 - +0.3 5,562,434 + +0.2 5,562,499 + -1.0 5,562,499 + +1.6 5,562,500 - -1.5 5,562,500 - +0.2 5,562,531 + -1.2 5,562,531 + -0.4 5,562,532 - +1.6 5,562,532 - +0.3 5,562,532 - -2.0 5,562,590 + AO353_25210 0.14 -0.4 5,562,590 + AO353_25210 0.14 +0.6 5,562,591 - AO353_25210 0.14 +0.9 5,562,591 - AO353_25210 0.14 -0.1 5,562,591 - AO353_25210 0.14 +0.6 5,562,591 - AO353_25210 0.14 -0.7 5,562,591 - AO353_25210 0.14 -0.4 5,562,591 - AO353_25210 0.14 -0.5 5,562,591 - AO353_25210 0.14 +0.6 5,562,591 - AO353_25210 0.14 +0.0 5,562,742 + AO353_25210 0.25 -2.1 5,562,743 - AO353_25210 0.25 +0.8 5,562,838 + AO353_25210 0.32 +2.6 5,562,842 + AO353_25210 0.32 +0.0 5,562,842 + AO353_25210 0.32 +0.6 5,562,843 - AO353_25210 0.32 -0.7 5,562,843 - AO353_25210 0.32 +0.3 5,562,843 - AO353_25210 0.32 +1.8 5,562,843 - AO353_25210 0.32 -0.7 5,562,843 - AO353_25210 0.32 -0.2 5,562,843 - AO353_25210 0.32 -0.1 5,562,888 - +1.6 5,562,924 + AO353_25210 0.38 +0.4 5,563,006 + AO353_25210 0.44 +0.1 5,563,012 - AO353_25210 0.45 +1.2 5,563,012 - AO353_25210 0.45 +0.6 5,563,041 - AO353_25210 0.47 -0.7 5,563,053 - AO353_25210 0.48 +1.5 5,563,106 + AO353_25210 0.52 +0.6 5,563,107 - AO353_25210 0.52 -1.7 5,563,113 + AO353_25210 0.52 -2.4 5,563,113 + AO353_25210 0.52 -1.0 5,563,229 + AO353_25210 0.61 -1.7 5,563,230 - AO353_25210 0.61 +0.6 5,563,355 + AO353_25210 0.70 +0.2 5,563,356 - AO353_25210 0.70 +0.6
Or see this region's nucleotide sequence