Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21570

Experiment: 1-ethyl-3-methylimidazolium acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21565 and AO353_21570 are separated by 18 nucleotidesAO353_21570 and AO353_21575 overlap by 4 nucleotides AO353_21565: AO353_21565 - type VI secretion protein, at 4,719,842 to 4,721,173 _21565 AO353_21570: AO353_21570 - type VI secretion system protein ImpK, at 4,721,192 to 4,721,959 _21570 AO353_21575: AO353_21575 - type VI secretion system protein ImpL, at 4,721,956 to 4,725,774 _21575 Position (kb) 4721 4722Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4720.192 kb on - strand, within AO353_21565at 4720.192 kb on - strand, within AO353_21565at 4720.192 kb on - strand, within AO353_21565at 4720.194 kb on + strand, within AO353_21565at 4720.195 kb on - strand, within AO353_21565at 4720.273 kb on + strand, within AO353_21565at 4720.374 kb on + strand, within AO353_21565at 4720.385 kb on + strandat 4720.385 kb on + strand, within AO353_21565at 4720.386 kb on - strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.622 kb on + strand, within AO353_21565at 4720.623 kb on - strand, within AO353_21565at 4720.623 kb on - strand, within AO353_21565at 4720.623 kb on - strand, within AO353_21565at 4720.623 kb on - strand, within AO353_21565at 4720.623 kb on - strand, within AO353_21565at 4720.623 kb on - strand, within AO353_21565at 4720.623 kb on - strand, within AO353_21565at 4720.623 kb on - strand, within AO353_21565at 4720.623 kb on - strand, within AO353_21565at 4720.725 kb on - strand, within AO353_21565at 4720.734 kb on + strand, within AO353_21565at 4720.735 kb on - strand, within AO353_21565at 4721.015 kb on + strand, within AO353_21565at 4721.015 kb on + strand, within AO353_21565at 4721.033 kb on - strand, within AO353_21565at 4721.432 kb on + strand, within AO353_21570at 4721.432 kb on + strand, within AO353_21570at 4721.433 kb on - strand, within AO353_21570at 4721.433 kb on - strand, within AO353_21570at 4721.511 kb on + strand, within AO353_21570at 4721.525 kb on + strand, within AO353_21570at 4721.525 kb on + strand, within AO353_21570at 4721.525 kb on + strandat 4721.525 kb on + strand, within AO353_21570at 4721.526 kb on - strand, within AO353_21570at 4721.526 kb on - strand, within AO353_21570at 4721.526 kb on - strand, within AO353_21570at 4721.526 kb on - strand, within AO353_21570at 4721.618 kb on + strand, within AO353_21570at 4721.618 kb on + strand, within AO353_21570at 4721.618 kb on + strand, within AO353_21570at 4721.618 kb on + strand, within AO353_21570at 4721.634 kb on + strand, within AO353_21570at 4722.070 kb on + strandat 4722.459 kb on - strand, within AO353_21575at 4722.487 kb on + strand, within AO353_21575at 4722.487 kb on + strand, within AO353_21575at 4722.487 kb on + strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.488 kb on - strand, within AO353_21575at 4722.589 kb on + strand, within AO353_21575at 4722.589 kb on + strand, within AO353_21575at 4722.589 kb on + strand, within AO353_21575at 4722.590 kb on - strand, within AO353_21575at 4722.590 kb on - strand, within AO353_21575at 4722.821 kb on - strand, within AO353_21575at 4722.821 kb on - strand, within AO353_21575at 4722.821 kb on - strand, within AO353_21575at 4722.821 kb on - strand, within AO353_21575at 4722.821 kb on - strandat 4722.849 kb on + strand, within AO353_21575at 4722.872 kb on - strand, within AO353_21575

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 15 mM
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4,720,192 - AO353_21565 0.26 -0.2
4,720,192 - AO353_21565 0.26 +0.4
4,720,192 - AO353_21565 0.26 +3.4
4,720,194 + AO353_21565 0.26 -0.2
4,720,195 - AO353_21565 0.27 -0.6
4,720,273 + AO353_21565 0.32 +0.2
4,720,374 + AO353_21565 0.40 +1.4
4,720,385 + -0.2
4,720,385 + AO353_21565 0.41 +1.2
4,720,386 - AO353_21565 0.41 +0.4
4,720,622 + AO353_21565 0.59 +0.6
4,720,622 + AO353_21565 0.59 +0.5
4,720,622 + AO353_21565 0.59 +0.0
4,720,622 + AO353_21565 0.59 +0.1
4,720,622 + AO353_21565 0.59 -0.4
4,720,622 + AO353_21565 0.59 -0.4
4,720,622 + AO353_21565 0.59 +0.5
4,720,622 + AO353_21565 0.59 +0.6
4,720,622 + AO353_21565 0.59 -0.2
4,720,622 + AO353_21565 0.59 -0.4
4,720,622 + AO353_21565 0.59 +0.4
4,720,623 - AO353_21565 0.59 +1.6
4,720,623 - AO353_21565 0.59 +0.7
4,720,623 - AO353_21565 0.59 +0.8
4,720,623 - AO353_21565 0.59 -0.8
4,720,623 - AO353_21565 0.59 +0.1
4,720,623 - AO353_21565 0.59 +0.0
4,720,623 - AO353_21565 0.59 +1.8
4,720,623 - AO353_21565 0.59 +0.1
4,720,623 - AO353_21565 0.59 +0.3
4,720,725 - AO353_21565 0.66 -0.4
4,720,734 + AO353_21565 0.67 +1.0
4,720,735 - AO353_21565 0.67 -0.6
4,721,015 + AO353_21565 0.88 -1.4
4,721,015 + AO353_21565 0.88 -0.2
4,721,033 - AO353_21565 0.89 -0.0
4,721,432 + AO353_21570 0.31 +0.1
4,721,432 + AO353_21570 0.31 -1.1
4,721,433 - AO353_21570 0.31 +0.2
4,721,433 - AO353_21570 0.31 -0.6
4,721,511 + AO353_21570 0.42 +1.4
4,721,525 + AO353_21570 0.43 +2.1
4,721,525 + AO353_21570 0.43 -1.2
4,721,525 + +0.8
4,721,525 + AO353_21570 0.43 +1.4
4,721,526 - AO353_21570 0.43 -0.2
4,721,526 - AO353_21570 0.43 +1.0
4,721,526 - AO353_21570 0.43 -1.2
4,721,526 - AO353_21570 0.43 -0.7
4,721,618 + AO353_21570 0.55 -0.2
4,721,618 + AO353_21570 0.55 -2.2
4,721,618 + AO353_21570 0.55 +0.2
4,721,618 + AO353_21570 0.55 -0.2
4,721,634 + AO353_21570 0.58 -0.8
4,722,070 + +0.8
4,722,459 - AO353_21575 0.13 -2.0
4,722,487 + AO353_21575 0.14 +0.8
4,722,487 + AO353_21575 0.14 +0.6
4,722,487 + AO353_21575 0.14 +0.8
4,722,488 - AO353_21575 0.14 +0.7
4,722,488 - AO353_21575 0.14 -0.1
4,722,488 - AO353_21575 0.14 +1.0
4,722,488 - AO353_21575 0.14 +0.6
4,722,488 - AO353_21575 0.14 -0.1
4,722,589 + AO353_21575 0.17 +0.8
4,722,589 + AO353_21575 0.17 -0.9
4,722,589 + AO353_21575 0.17 -0.3
4,722,590 - AO353_21575 0.17 -1.6
4,722,590 - AO353_21575 0.17 +0.8
4,722,821 - AO353_21575 0.23 -0.8
4,722,821 - AO353_21575 0.23 +1.4
4,722,821 - AO353_21575 0.23 -0.5
4,722,821 - AO353_21575 0.23 -0.0
4,722,821 - +0.8
4,722,849 + AO353_21575 0.23 +0.2
4,722,872 - AO353_21575 0.24 +0.0

Or see this region's nucleotide sequence