Experiment: 1-ethyl-3-methylimidazolium acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00350 and AO353_00355 are separated by 155 nucleotides AO353_00355 and AO353_00360 overlap by 1 nucleotides AO353_00360 and AO353_00365 are separated by 58 nucleotides
AO353_00350: AO353_00350 - copper-binding protein, at 63,488 to 64,045
_00350
AO353_00355: AO353_00355 - transcriptional regulator, at 64,201 to 64,881
_00355
AO353_00360: AO353_00360 - ATPase, at 64,881 to 66,242
_00360
AO353_00365: AO353_00365 - multidrug ABC transporter substrate-binding protein, at 66,301 to 67,545
_00365
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.898 kb on + strand, within AO353_00350 at 63.898 kb on + strand, within AO353_00350 at 63.898 kb on + strand, within AO353_00350 at 63.898 kb on + strand, within AO353_00350 at 63.898 kb on + strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.964 kb on - strand, within AO353_00350 at 63.964 kb on - strand, within AO353_00350 at 63.964 kb on - strand, within AO353_00350 at 64.022 kb on + strand at 64.023 kb on - strand at 64.088 kb on + strand at 64.088 kb on + strand at 64.089 kb on - strand at 64.089 kb on - strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.092 kb on - strand at 64.092 kb on - strand at 64.125 kb on + strand at 64.125 kb on + strand at 64.126 kb on - strand at 64.126 kb on - strand at 64.126 kb on - strand at 64.136 kb on - strand at 64.136 kb on - strand at 64.166 kb on + strand at 64.166 kb on + strand at 64.166 kb on + strand at 64.166 kb on + strand at 64.167 kb on - strand at 64.167 kb on - strand at 64.168 kb on + strand at 64.197 kb on - strand at 64.243 kb on + strand at 64.243 kb on + strand at 64.243 kb on + strand at 64.244 kb on - strand at 64.244 kb on - strand at 64.244 kb on - strand at 64.333 kb on + strand, within AO353_00355 at 64.334 kb on - strand, within AO353_00355 at 64.493 kb on - strand, within AO353_00355 at 64.547 kb on + strand, within AO353_00355 at 64.547 kb on + strand, within AO353_00355 at 64.547 kb on + strand, within AO353_00355 at 64.548 kb on - strand, within AO353_00355 at 64.836 kb on + strand at 64.841 kb on + strand at 64.842 kb on - strand at 64.856 kb on - strand at 65.242 kb on - strand, within AO353_00360 at 65.250 kb on + strand, within AO353_00360 at 65.250 kb on + strand, within AO353_00360 at 65.251 kb on - strand, within AO353_00360 at 65.538 kb on - strand, within AO353_00360 at 65.682 kb on + strand, within AO353_00360 at 65.751 kb on + strand, within AO353_00360 at 65.751 kb on + strand, within AO353_00360 at 65.751 kb on + strand, within AO353_00360 at 65.752 kb on - strand, within AO353_00360 at 65.752 kb on - strand, within AO353_00360 at 65.838 kb on + strand, within AO353_00360 at 65.839 kb on - strand, within AO353_00360 at 65.839 kb on - strand, within AO353_00360 at 65.839 kb on - strand, within AO353_00360 at 66.084 kb on + strand, within AO353_00360 at 66.085 kb on - strand, within AO353_00360 at 66.302 kb on + strand at 66.302 kb on + strand at 66.302 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 15 mM remove 63,898 + AO353_00350 0.73 -1.2 63,898 + AO353_00350 0.73 -0.3 63,898 + AO353_00350 0.73 +1.4 63,898 + AO353_00350 0.73 +1.4 63,898 + AO353_00350 0.73 -1.2 63,899 - AO353_00350 0.74 +0.8 63,899 - AO353_00350 0.74 +1.3 63,899 - AO353_00350 0.74 -0.5 63,899 - AO353_00350 0.74 -0.7 63,899 - AO353_00350 0.74 -1.7 63,899 - AO353_00350 0.74 -2.5 63,963 + AO353_00350 0.85 +0.6 63,963 + AO353_00350 0.85 +0.8 63,963 + AO353_00350 0.85 -0.2 63,963 + AO353_00350 0.85 +1.8 63,963 + AO353_00350 0.85 +0.8 63,964 - AO353_00350 0.85 +1.6 63,964 - AO353_00350 0.85 +1.6 63,964 - AO353_00350 0.85 +0.8 64,022 + -1.0 64,023 - +0.8 64,088 + +0.4 64,088 + -0.7 64,089 - +0.8 64,089 - +2.4 64,091 + -2.0 64,091 + -1.5 64,091 + +0.8 64,091 + +0.6 64,091 + -0.7 64,091 + -2.0 64,092 - -0.7 64,092 - -0.2 64,125 + +2.2 64,125 + +0.6 64,126 - +0.2 64,126 - +0.3 64,126 - -1.3 64,136 - -1.3 64,136 - +0.8 64,166 + +0.3 64,166 + -0.5 64,166 + -0.2 64,166 + +0.6 64,167 - +0.3 64,167 - -0.2 64,168 + -0.4 64,197 - +1.8 64,243 + -0.2 64,243 + -0.1 64,243 + +0.6 64,244 - +0.8 64,244 - +0.6 64,244 - -2.2 64,333 + AO353_00355 0.19 -2.2 64,334 - AO353_00355 0.20 -0.0 64,493 - AO353_00355 0.43 +0.8 64,547 + AO353_00355 0.51 -1.9 64,547 + AO353_00355 0.51 -0.7 64,547 + AO353_00355 0.51 +0.1 64,548 - AO353_00355 0.51 -2.1 64,836 + +0.4 64,841 + -0.4 64,842 - +1.3 64,856 - -1.6 65,242 - AO353_00360 0.27 +1.1 65,250 + AO353_00360 0.27 -1.2 65,250 + AO353_00360 0.27 -0.9 65,251 - AO353_00360 0.27 -1.6 65,538 - AO353_00360 0.48 +0.3 65,682 + AO353_00360 0.59 -0.4 65,751 + AO353_00360 0.64 -1.3 65,751 + AO353_00360 0.64 +0.7 65,751 + AO353_00360 0.64 -2.2 65,752 - AO353_00360 0.64 +1.8 65,752 - AO353_00360 0.64 +0.1 65,838 + AO353_00360 0.70 -0.6 65,839 - AO353_00360 0.70 +0.8 65,839 - AO353_00360 0.70 -2.2 65,839 - AO353_00360 0.70 +1.6 66,084 + AO353_00360 0.88 -1.2 66,085 - AO353_00360 0.88 -0.5 66,302 + -0.1 66,302 + -0.7 66,302 + -1.9
Or see this region's nucleotide sequence