Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3507 and Shewana3_3508 are separated by 210 nucleotides Shewana3_3508 and Shewana3_3509 are separated by 80 nucleotides
Shewana3_3507: Shewana3_3507 - short chain dehydrogenase (RefSeq), at 4,207,997 to 4,208,716
_3507
Shewana3_3508: Shewana3_3508 - putative thiol-disulphide oxidoreductase DCC (RefSeq), at 4,208,927 to 4,209,316
_3508
Shewana3_3509: Shewana3_3509 - malate dehydrogenase (RefSeq), at 4,209,397 to 4,210,332
_3509
Position (kb)
4208
4209
4210 Strain fitness (log2 ratio)
-1
0
1 at 4207.934 kb on + strand at 4208.201 kb on - strand, within Shewana3_3507 at 4208.225 kb on + strand, within Shewana3_3507 at 4208.233 kb on - strand, within Shewana3_3507 at 4208.428 kb on - strand, within Shewana3_3507 at 4208.490 kb on - strand, within Shewana3_3507 at 4208.563 kb on + strand, within Shewana3_3507 at 4208.563 kb on + strand, within Shewana3_3507 at 4208.564 kb on + strand, within Shewana3_3507 at 4208.572 kb on - strand, within Shewana3_3507 at 4208.572 kb on - strand, within Shewana3_3507 at 4208.577 kb on + strand, within Shewana3_3507 at 4208.605 kb on + strand, within Shewana3_3507 at 4208.605 kb on + strand, within Shewana3_3507 at 4208.760 kb on - strand at 4208.760 kb on - strand at 4208.985 kb on + strand, within Shewana3_3508 at 4208.985 kb on + strand, within Shewana3_3508 at 4209.074 kb on + strand, within Shewana3_3508 at 4209.074 kb on + strand, within Shewana3_3508 at 4209.082 kb on - strand, within Shewana3_3508 at 4209.139 kb on + strand, within Shewana3_3508 at 4209.185 kb on + strand, within Shewana3_3508 at 4209.491 kb on - strand, within Shewana3_3509 at 4209.650 kb on + strand, within Shewana3_3509 at 4209.991 kb on + strand, within Shewana3_3509 at 4210.083 kb on - strand, within Shewana3_3509 at 4210.129 kb on + strand, within Shewana3_3509 at 4210.312 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,207,934 + -0.3 4,208,201 - Shewana3_3507 0.28 -0.4 4,208,225 + Shewana3_3507 0.32 +0.2 4,208,233 - Shewana3_3507 0.33 +0.0 4,208,428 - Shewana3_3507 0.60 -0.0 4,208,490 - Shewana3_3507 0.68 +0.0 4,208,563 + Shewana3_3507 0.79 -0.0 4,208,563 + Shewana3_3507 0.79 +0.4 4,208,564 + Shewana3_3507 0.79 -0.9 4,208,572 - Shewana3_3507 0.80 +0.5 4,208,572 - Shewana3_3507 0.80 +0.1 4,208,577 + Shewana3_3507 0.81 -1.5 4,208,605 + Shewana3_3507 0.84 +0.1 4,208,605 + Shewana3_3507 0.84 -0.7 4,208,760 - +0.1 4,208,760 - -0.2 4,208,985 + Shewana3_3508 0.15 -0.2 4,208,985 + Shewana3_3508 0.15 +0.7 4,209,074 + Shewana3_3508 0.38 +0.5 4,209,074 + Shewana3_3508 0.38 +0.1 4,209,082 - Shewana3_3508 0.40 +1.1 4,209,139 + Shewana3_3508 0.54 -0.0 4,209,185 + Shewana3_3508 0.66 -0.0 4,209,491 - Shewana3_3509 0.10 -0.4 4,209,650 + Shewana3_3509 0.27 -1.1 4,209,991 + Shewana3_3509 0.63 +0.8 4,210,083 - Shewana3_3509 0.73 -0.2 4,210,129 + Shewana3_3509 0.78 -0.9 4,210,312 + -0.4
Or see this region's nucleotide sequence