Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2980 and Shewana3_2981 are separated by 251 nucleotides Shewana3_2981 and Shewana3_2982 are separated by 130 nucleotides Shewana3_2982 and Shewana3_2983 are separated by 220 nucleotides Shewana3_2983 and Shewana3_2984 are separated by 70 nucleotides
Shewana3_2980: Shewana3_2980 - TetR family transcriptional regulator (RefSeq), at 3,580,954 to 3,581,562
_2980
Shewana3_2981: Shewana3_2981 - HPP family protein (RefSeq), at 3,581,814 to 3,582,293
_2981
Shewana3_2982: Shewana3_2982 - short chain fatty acid transporter (RefSeq), at 3,582,424 to 3,583,752
_2982
Shewana3_2983: Shewana3_2983 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 3,583,973 to 3,584,443
_2983
Shewana3_2984: Shewana3_2984 - glycosyl hydrolase family chitinase (RefSeq), at 3,584,514 to 3,587,120
_2984
Position (kb)
3582
3583
3584 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3581.560 kb on + strand at 3581.719 kb on + strand at 3581.727 kb on - strand at 3581.732 kb on - strand at 3581.734 kb on + strand at 3581.734 kb on + strand at 3581.806 kb on - strand at 3581.901 kb on + strand, within Shewana3_2981 at 3581.919 kb on - strand, within Shewana3_2981 at 3582.018 kb on + strand, within Shewana3_2981 at 3582.119 kb on + strand, within Shewana3_2981 at 3582.119 kb on + strand, within Shewana3_2981 at 3582.129 kb on + strand, within Shewana3_2981 at 3582.137 kb on - strand, within Shewana3_2981 at 3582.137 kb on - strand, within Shewana3_2981 at 3582.214 kb on + strand, within Shewana3_2981 at 3582.287 kb on + strand at 3582.557 kb on - strand, within Shewana3_2982 at 3582.736 kb on + strand, within Shewana3_2982 at 3582.766 kb on - strand, within Shewana3_2982 at 3582.828 kb on - strand, within Shewana3_2982 at 3582.867 kb on + strand, within Shewana3_2982 at 3582.867 kb on + strand, within Shewana3_2982 at 3582.867 kb on + strand, within Shewana3_2982 at 3582.937 kb on - strand, within Shewana3_2982 at 3583.063 kb on - strand, within Shewana3_2982 at 3583.070 kb on + strand, within Shewana3_2982 at 3583.150 kb on + strand, within Shewana3_2982 at 3583.197 kb on - strand, within Shewana3_2982 at 3583.202 kb on - strand, within Shewana3_2982 at 3583.371 kb on + strand, within Shewana3_2982 at 3583.757 kb on - strand at 3583.757 kb on - strand at 3583.804 kb on + strand at 3583.825 kb on - strand at 3584.074 kb on - strand, within Shewana3_2983 at 3584.595 kb on + strand at 3584.705 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,581,560 + +0.6 3,581,719 + -0.3 3,581,727 - +0.4 3,581,732 - -0.2 3,581,734 + -0.1 3,581,734 + +0.4 3,581,806 - +0.1 3,581,901 + Shewana3_2981 0.18 -0.8 3,581,919 - Shewana3_2981 0.22 +1.7 3,582,018 + Shewana3_2981 0.42 +0.4 3,582,119 + Shewana3_2981 0.64 +0.2 3,582,119 + Shewana3_2981 0.64 +0.8 3,582,129 + Shewana3_2981 0.66 +0.2 3,582,137 - Shewana3_2981 0.67 -0.2 3,582,137 - Shewana3_2981 0.67 -0.7 3,582,214 + Shewana3_2981 0.83 -0.3 3,582,287 + -0.2 3,582,557 - Shewana3_2982 0.10 +0.6 3,582,736 + Shewana3_2982 0.23 +0.6 3,582,766 - Shewana3_2982 0.26 +0.0 3,582,828 - Shewana3_2982 0.30 -0.0 3,582,867 + Shewana3_2982 0.33 +2.2 3,582,867 + Shewana3_2982 0.33 +0.6 3,582,867 + Shewana3_2982 0.33 +1.0 3,582,937 - Shewana3_2982 0.39 +1.1 3,583,063 - Shewana3_2982 0.48 +0.4 3,583,070 + Shewana3_2982 0.49 -0.2 3,583,150 + Shewana3_2982 0.55 +3.8 3,583,197 - Shewana3_2982 0.58 -0.1 3,583,202 - Shewana3_2982 0.59 +0.2 3,583,371 + Shewana3_2982 0.71 -1.0 3,583,757 - -0.7 3,583,757 - -0.1 3,583,804 + +1.6 3,583,825 - -0.7 3,584,074 - Shewana3_2983 0.21 -1.4 3,584,595 + -0.3 3,584,705 - +0.0
Or see this region's nucleotide sequence