Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2606 and Shewana3_2607 are separated by 98 nucleotides Shewana3_2607 and Shewana3_2608 are separated by 57 nucleotides Shewana3_2608 and Shewana3_2609 are separated by 125 nucleotides
Shewana3_2606: Shewana3_2606 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,110,619 to 3,111,968
_2606
Shewana3_2607: Shewana3_2607 - hypothetical protein (RefSeq), at 3,112,067 to 3,112,504
_2607
Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071
_2608
Shewana3_2609: Shewana3_2609 - hypothetical protein (RefSeq), at 3,113,197 to 3,113,655
_2609
Position (kb) 3112
3113 Strain fitness (log2 ratio) -1
0
1 at 3111.988 kb on - strand at 3112.052 kb on + strand at 3112.163 kb on - strand, within Shewana3_2607 at 3112.231 kb on - strand, within Shewana3_2607 at 3112.301 kb on + strand, within Shewana3_2607 at 3112.552 kb on + strand at 3112.560 kb on - strand at 3112.560 kb on - strand at 3113.371 kb on + strand, within Shewana3_2609
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,111,988 - +0.5 3,112,052 + +0.7 3,112,163 - Shewana3_2607 0.22 +0.5 3,112,231 - Shewana3_2607 0.37 +0.5 3,112,301 + Shewana3_2607 0.53 -0.5 3,112,552 + +0.5 3,112,560 - -1.2 3,112,560 - -0.4 3,113,371 + Shewana3_2609 0.38 -0.5
Or see this region's nucleotide sequence