Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2410 and Shewana3_2411 are separated by 45 nucleotides Shewana3_2411 and Shewana3_2412 are separated by 231 nucleotides Shewana3_2412 and Shewana3_2413 are separated by 32 nucleotides
Shewana3_2410: Shewana3_2410 - vault protein inter-alpha-trypsin subunit (RefSeq), at 2,888,800 to 2,891,055
_2410
Shewana3_2411: Shewana3_2411 - OmpA/MotB domain-containing protein (RefSeq), at 2,891,101 to 2,891,895
_2411
Shewana3_2412: Shewana3_2412 - two component transcriptional regulator (RefSeq), at 2,892,127 to 2,892,819
_2412
Shewana3_2413: Shewana3_2413 - ATPase domain-containing protein (RefSeq), at 2,892,852 to 2,895,011
_2413
Position (kb)
2891
2892 Strain fitness (log2 ratio)
-1
0
1 at 2890.320 kb on - strand, within Shewana3_2410 at 2890.402 kb on - strand, within Shewana3_2410 at 2890.618 kb on + strand, within Shewana3_2410 at 2890.762 kb on - strand, within Shewana3_2410 at 2890.767 kb on - strand, within Shewana3_2410 at 2890.957 kb on + strand at 2890.957 kb on + strand at 2891.154 kb on - strand at 2891.159 kb on - strand at 2891.221 kb on + strand, within Shewana3_2411 at 2891.374 kb on + strand, within Shewana3_2411 at 2891.461 kb on - strand, within Shewana3_2411 at 2892.216 kb on - strand, within Shewana3_2412 at 2892.319 kb on - strand, within Shewana3_2412 at 2892.350 kb on - strand, within Shewana3_2412 at 2892.457 kb on - strand, within Shewana3_2412 at 2892.620 kb on - strand, within Shewana3_2412 at 2892.670 kb on - strand, within Shewana3_2412 at 2892.710 kb on - strand, within Shewana3_2412 at 2892.793 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,890,320 - Shewana3_2410 0.67 -0.0 2,890,402 - Shewana3_2410 0.71 -0.9 2,890,618 + Shewana3_2410 0.81 -0.3 2,890,762 - Shewana3_2410 0.87 +0.5 2,890,767 - Shewana3_2410 0.87 +0.5 2,890,957 + +0.9 2,890,957 + -0.1 2,891,154 - -0.5 2,891,159 - +0.5 2,891,221 + Shewana3_2411 0.15 +1.1 2,891,374 + Shewana3_2411 0.34 +1.5 2,891,461 - Shewana3_2411 0.45 +0.8 2,892,216 - Shewana3_2412 0.13 +0.5 2,892,319 - Shewana3_2412 0.28 +0.5 2,892,350 - Shewana3_2412 0.32 +0.5 2,892,457 - Shewana3_2412 0.48 +0.5 2,892,620 - Shewana3_2412 0.71 -1.5 2,892,670 - Shewana3_2412 0.78 -0.5 2,892,710 - Shewana3_2412 0.84 +0.5 2,892,793 + +0.5
Or see this region's nucleotide sequence