Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2289 and Shewana3_2290 overlap by 1 nucleotides Shewana3_2290 and Shewana3_2291 are separated by 127 nucleotides Shewana3_2291 and Shewana3_2292 are separated by 596 nucleotides
Shewana3_2289: Shewana3_2289 - transcription-repair coupling factor (RefSeq), at 2,750,925 to 2,754,407
_2289
Shewana3_2290: Shewana3_2290 - hypothetical protein (RefSeq), at 2,754,407 to 2,755,432
_2290
Shewana3_2291: Shewana3_2291 - acylphosphatase (RefSeq), at 2,755,560 to 2,755,832
_2291
Shewana3_2292: Shewana3_2292 - hypothetical protein (RefSeq), at 2,756,429 to 2,756,968
_2292
Position (kb)
2754
2755
2756 Strain fitness (log2 ratio)
-1
0
1
2 at 2753.660 kb on + strand, within Shewana3_2289 at 2753.828 kb on - strand, within Shewana3_2289 at 2754.103 kb on + strand at 2754.336 kb on + strand at 2754.407 kb on + strand at 2754.853 kb on - strand, within Shewana3_2290 at 2754.863 kb on + strand, within Shewana3_2290 at 2754.871 kb on - strand, within Shewana3_2290 at 2754.871 kb on - strand, within Shewana3_2290 at 2755.164 kb on + strand, within Shewana3_2290 at 2755.256 kb on + strand, within Shewana3_2290 at 2755.258 kb on + strand, within Shewana3_2290 at 2755.368 kb on + strand at 2755.613 kb on + strand, within Shewana3_2291 at 2755.641 kb on - strand, within Shewana3_2291 at 2756.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,753,660 + Shewana3_2289 0.79 +0.5 2,753,828 - Shewana3_2289 0.83 -0.1 2,754,103 + +0.5 2,754,336 + +0.5 2,754,407 + +0.5 2,754,853 - Shewana3_2290 0.43 +0.5 2,754,863 + Shewana3_2290 0.44 +1.0 2,754,871 - Shewana3_2290 0.45 +0.5 2,754,871 - Shewana3_2290 0.45 +0.5 2,755,164 + Shewana3_2290 0.74 +0.5 2,755,256 + Shewana3_2290 0.83 -0.9 2,755,258 + Shewana3_2290 0.83 +2.1 2,755,368 + +2.2 2,755,613 + Shewana3_2291 0.19 +0.5 2,755,641 - Shewana3_2291 0.30 -0.5 2,756,335 + +0.5
Or see this region's nucleotide sequence