Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2264

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2262 and Shewana3_2263 are separated by 121 nucleotidesShewana3_2263 and Shewana3_2264 are separated by 90 nucleotidesShewana3_2264 and Shewana3_2265 are separated by 193 nucleotidesShewana3_2265 and Shewana3_2266 are separated by 68 nucleotides Shewana3_2262: Shewana3_2262 - glutathione S-transferase domain-containing protein (RefSeq), at 2,723,734 to 2,724,405 _2262 Shewana3_2263: Shewana3_2263 - hypothetical protein (RefSeq), at 2,724,527 to 2,724,751 _2263 Shewana3_2264: Shewana3_2264 - sulphate transporter (RefSeq), at 2,724,842 to 2,726,599 _2264 Shewana3_2265: Shewana3_2265 - lysine exporter protein LysE/YggA (RefSeq), at 2,726,793 to 2,727,419 _2265 Shewana3_2266: Shewana3_2266 - GntR family transcriptional regulator (RefSeq), at 2,727,488 to 2,728,870 _2266 Position (kb) 2724 2725 2726 2727Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2723.873 kb on + strand, within Shewana3_2262at 2723.895 kb on - strand, within Shewana3_2262at 2723.938 kb on - strand, within Shewana3_2262at 2724.178 kb on - strand, within Shewana3_2262at 2724.198 kb on - strand, within Shewana3_2262at 2724.220 kb on + strand, within Shewana3_2262at 2724.584 kb on + strand, within Shewana3_2263at 2724.599 kb on - strand, within Shewana3_2263at 2724.622 kb on + strand, within Shewana3_2263at 2724.640 kb on + strand, within Shewana3_2263at 2724.973 kb on - strandat 2724.973 kb on - strandat 2725.220 kb on + strand, within Shewana3_2264at 2725.228 kb on - strand, within Shewana3_2264at 2725.337 kb on + strand, within Shewana3_2264at 2725.514 kb on + strand, within Shewana3_2264at 2725.514 kb on + strand, within Shewana3_2264at 2725.640 kb on + strand, within Shewana3_2264at 2725.727 kb on + strand, within Shewana3_2264at 2725.832 kb on - strand, within Shewana3_2264at 2725.900 kb on - strand, within Shewana3_2264at 2726.586 kb on - strandat 2726.764 kb on + strandat 2726.830 kb on - strandat 2727.016 kb on - strand, within Shewana3_2265at 2727.078 kb on - strand, within Shewana3_2265at 2727.084 kb on - strand, within Shewana3_2265at 2727.248 kb on - strand, within Shewana3_2265at 2727.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,723,873 + Shewana3_2262 0.21 -0.1
2,723,895 - Shewana3_2262 0.24 +2.1
2,723,938 - Shewana3_2262 0.30 +1.5
2,724,178 - Shewana3_2262 0.66 +0.5
2,724,198 - Shewana3_2262 0.69 -1.5
2,724,220 + Shewana3_2262 0.72 +0.5
2,724,584 + Shewana3_2263 0.25 +0.1
2,724,599 - Shewana3_2263 0.32 +0.5
2,724,622 + Shewana3_2263 0.42 +1.5
2,724,640 + Shewana3_2263 0.50 -1.5
2,724,973 - -0.1
2,724,973 - -0.1
2,725,220 + Shewana3_2264 0.22 +0.5
2,725,228 - Shewana3_2264 0.22 +1.2
2,725,337 + Shewana3_2264 0.28 -0.1
2,725,514 + Shewana3_2264 0.38 +0.5
2,725,514 + Shewana3_2264 0.38 +0.5
2,725,640 + Shewana3_2264 0.45 +0.5
2,725,727 + Shewana3_2264 0.50 +0.5
2,725,832 - Shewana3_2264 0.56 +0.8
2,725,900 - Shewana3_2264 0.60 +0.0
2,726,586 - +0.5
2,726,764 + +0.5
2,726,830 - -0.5
2,727,016 - Shewana3_2265 0.36 -0.4
2,727,078 - Shewana3_2265 0.45 -1.8
2,727,084 - Shewana3_2265 0.46 +0.5
2,727,248 - Shewana3_2265 0.73 -3.0
2,727,561 + +1.4

Or see this region's nucleotide sequence