Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2093 and Shewana3_2094 are separated by 104 nucleotides Shewana3_2094 and Shewana3_2095 are separated by 404 nucleotides
Shewana3_2093: Shewana3_2093 - transposase (RefSeq), at 2,513,627 to 2,513,866
_2093
Shewana3_2094: Shewana3_2094 - hypothetical protein (RefSeq), at 2,513,971 to 2,514,882
_2094
Shewana3_2095: Shewana3_2095 - hypothetical protein (RefSeq), at 2,515,287 to 2,516,345
_2095
Position (kb)
2513
2514
2515 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2513.140 kb on + strand at 2513.143 kb on - strand at 2513.143 kb on - strand at 2513.143 kb on - strand at 2513.243 kb on - strand at 2513.302 kb on - strand at 2513.302 kb on - strand at 2513.451 kb on + strand at 2513.554 kb on - strand at 2513.554 kb on - strand at 2513.561 kb on + strand at 2513.647 kb on + strand at 2513.655 kb on - strand, within Shewana3_2093 at 2513.691 kb on + strand, within Shewana3_2093 at 2513.876 kb on - strand at 2513.953 kb on + strand at 2514.008 kb on + strand at 2514.016 kb on - strand at 2514.336 kb on + strand, within Shewana3_2094 at 2514.336 kb on + strand, within Shewana3_2094 at 2514.359 kb on - strand, within Shewana3_2094 at 2514.486 kb on + strand, within Shewana3_2094 at 2514.486 kb on + strand, within Shewana3_2094 at 2514.608 kb on - strand, within Shewana3_2094 at 2514.646 kb on - strand, within Shewana3_2094 at 2514.652 kb on + strand, within Shewana3_2094 at 2514.698 kb on - strand, within Shewana3_2094 at 2514.765 kb on - strand, within Shewana3_2094 at 2514.907 kb on + strand at 2515.007 kb on + strand at 2515.016 kb on + strand at 2515.071 kb on + strand at 2515.071 kb on + strand at 2515.071 kb on + strand at 2515.171 kb on + strand at 2515.179 kb on - strand at 2515.269 kb on + strand at 2515.414 kb on - strand, within Shewana3_2095 at 2515.416 kb on - strand, within Shewana3_2095 at 2515.584 kb on - strand, within Shewana3_2095 at 2515.827 kb on + strand, within Shewana3_2095 at 2515.834 kb on + strand, within Shewana3_2095
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,513,140 + +0.5 2,513,143 - +0.5 2,513,143 - +0.5 2,513,143 - +0.5 2,513,243 - +1.0 2,513,302 - +0.5 2,513,302 - +0.5 2,513,451 + +0.5 2,513,554 - +0.5 2,513,554 - +0.5 2,513,561 + +0.5 2,513,647 + -0.5 2,513,655 - Shewana3_2093 0.12 +0.5 2,513,691 + Shewana3_2093 0.27 +0.5 2,513,876 - +0.5 2,513,953 + +1.5 2,514,008 + +0.5 2,514,016 - +0.5 2,514,336 + Shewana3_2094 0.40 -1.0 2,514,336 + Shewana3_2094 0.40 +0.5 2,514,359 - Shewana3_2094 0.43 -1.8 2,514,486 + Shewana3_2094 0.56 +0.5 2,514,486 + Shewana3_2094 0.56 +0.5 2,514,608 - Shewana3_2094 0.70 +0.4 2,514,646 - Shewana3_2094 0.74 +0.5 2,514,652 + Shewana3_2094 0.75 +0.5 2,514,698 - Shewana3_2094 0.80 +0.5 2,514,765 - Shewana3_2094 0.87 +1.5 2,514,907 + +1.5 2,515,007 + +1.9 2,515,016 + +1.0 2,515,071 + +2.1 2,515,071 + +0.5 2,515,071 + +0.5 2,515,171 + -1.0 2,515,179 - +0.5 2,515,269 + +1.1 2,515,414 - Shewana3_2095 0.12 +0.5 2,515,416 - Shewana3_2095 0.12 +0.5 2,515,584 - Shewana3_2095 0.28 +0.5 2,515,827 + Shewana3_2095 0.51 +0.5 2,515,834 + Shewana3_2095 0.52 +0.5
Or see this region's nucleotide sequence