Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1718

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1717 and Shewana3_1718 are separated by 23 nucleotidesShewana3_1718 and Shewana3_1719 are separated by 263 nucleotidesShewana3_1719 and Shewana3_1720 are separated by 126 nucleotides Shewana3_1717: Shewana3_1717 - NAD-dependent deacetylase (RefSeq), at 2,020,983 to 2,021,726 _1717 Shewana3_1718: Shewana3_1718 - hypothetical protein (RefSeq), at 2,021,750 to 2,022,214 _1718 Shewana3_1719: Shewana3_1719 - hypothetical protein (RefSeq), at 2,022,478 to 2,022,840 _1719 Shewana3_1720: Shewana3_1720 - magnesium and cobalt transport protein CorA (RefSeq), at 2,022,967 to 2,023,914 _1720 Position (kb) 2021 2022 2023Strain fitness (log2 ratio) -1 0 1at 2020.822 kb on - strandat 2021.392 kb on - strand, within Shewana3_1717at 2021.613 kb on - strand, within Shewana3_1717at 2021.723 kb on - strandat 2021.723 kb on - strandat 2021.826 kb on - strand, within Shewana3_1718at 2022.016 kb on - strand, within Shewana3_1718at 2022.113 kb on + strand, within Shewana3_1718at 2022.216 kb on - strandat 2022.471 kb on - strandat 2022.633 kb on + strand, within Shewana3_1719at 2023.143 kb on + strand, within Shewana3_1720

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,020,822 - +0.5
2,021,392 - Shewana3_1717 0.55 +0.5
2,021,613 - Shewana3_1717 0.85 -0.0
2,021,723 - +0.5
2,021,723 - -0.5
2,021,826 - Shewana3_1718 0.16 +0.5
2,022,016 - Shewana3_1718 0.57 -0.5
2,022,113 + Shewana3_1718 0.78 -0.8
2,022,216 - +0.5
2,022,471 - -0.5
2,022,633 + Shewana3_1719 0.43 -0.0
2,023,143 + Shewana3_1720 0.19 +1.4

Or see this region's nucleotide sequence