Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadJ and Shewana3_1462 are separated by 262 nucleotides Shewana3_1462 and Shewana3_1463 are separated by 274 nucleotides Shewana3_1463 and Shewana3_1464 are separated by 106 nucleotides
Shewana3_1461: fadJ - multifunctional fatty acid oxidation complex subunit alpha (RefSeq), at 1,694,533 to 1,696,662
fadJ
Shewana3_1462: Shewana3_1462 - hypothetical protein (RefSeq), at 1,696,925 to 1,697,134
_1462
Shewana3_1463: Shewana3_1463 - hypothetical protein (RefSeq), at 1,697,409 to 1,697,996
_1463
Shewana3_1464: Shewana3_1464 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,698,103 to 1,702,404
_1464
Position (kb)
1696
1697
1698 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1695.958 kb on - strand, within fadJ at 1695.978 kb on + strand, within fadJ at 1696.084 kb on + strand, within fadJ at 1696.351 kb on + strand, within fadJ at 1696.351 kb on + strand, within fadJ at 1696.409 kb on - strand, within fadJ at 1696.512 kb on + strand at 1696.518 kb on + strand at 1696.604 kb on + strand at 1696.612 kb on - strand at 1696.824 kb on - strand at 1696.835 kb on - strand at 1697.119 kb on - strand at 1697.120 kb on + strand at 1697.137 kb on - strand at 1697.222 kb on + strand at 1697.222 kb on + strand at 1697.230 kb on - strand at 1697.230 kb on - strand at 1697.230 kb on - strand at 1697.272 kb on + strand at 1697.280 kb on - strand at 1697.304 kb on + strand at 1697.311 kb on - strand at 1697.312 kb on - strand at 1697.312 kb on - strand at 1697.846 kb on - strand, within Shewana3_1463 at 1697.893 kb on - strand, within Shewana3_1463 at 1698.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,695,958 - fadJ Shewana3_1461 0.67 +0.5 1,695,978 + fadJ Shewana3_1461 0.68 +1.1 1,696,084 + fadJ Shewana3_1461 0.73 +2.1 1,696,351 + fadJ Shewana3_1461 0.85 +0.2 1,696,351 + fadJ Shewana3_1461 0.85 +0.7 1,696,409 - fadJ Shewana3_1461 0.88 +0.5 1,696,512 + -0.5 1,696,518 + -0.1 1,696,604 + -0.2 1,696,612 - +0.5 1,696,824 - +0.2 1,696,835 - +0.4 1,697,119 - +0.5 1,697,120 + +2.5 1,697,137 - +0.5 1,697,222 + +0.5 1,697,222 + +0.5 1,697,230 - -0.1 1,697,230 - +0.0 1,697,230 - -0.3 1,697,272 + +0.5 1,697,280 - -1.5 1,697,304 + -4.0 1,697,311 - -0.9 1,697,312 - -0.3 1,697,312 - +0.0 1,697,846 - Shewana3_1463 0.74 -0.8 1,697,893 - Shewana3_1463 0.82 +0.5 1,698,004 - +0.5
Or see this region's nucleotide sequence