Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0267 and Shewana3_0268 are separated by 572 nucleotides Shewana3_0268 and Shewana3_0269 are separated by 304 nucleotides
Shewana3_0267: Shewana3_0267 - hypothetical protein (RefSeq), at 300,704 to 301,093
_0267
Shewana3_0268: Shewana3_0268 - site-specific DNA-methyltransferase (adenine-specific) (RefSeq), at 301,666 to 302,505
_0268
Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267
_0269
Position (kb) 301
302
303 Strain fitness (log2 ratio) -1
0
1 at 300.743 kb on - strand, within Shewana3_0267 at 300.743 kb on - strand, within Shewana3_0267 at 300.764 kb on + strand, within Shewana3_0267 at 300.881 kb on + strand, within Shewana3_0267 at 300.881 kb on + strand, within Shewana3_0267 at 300.975 kb on + strand, within Shewana3_0267 at 301.004 kb on - strand, within Shewana3_0267 at 301.075 kb on - strand at 301.771 kb on + strand, within Shewana3_0268 at 301.796 kb on - strand, within Shewana3_0268 at 301.809 kb on + strand, within Shewana3_0268 at 301.819 kb on + strand, within Shewana3_0268 at 301.855 kb on + strand, within Shewana3_0268 at 301.892 kb on - strand, within Shewana3_0268 at 301.897 kb on + strand, within Shewana3_0268 at 301.915 kb on + strand, within Shewana3_0268 at 301.923 kb on - strand, within Shewana3_0268 at 301.940 kb on + strand, within Shewana3_0268 at 301.953 kb on - strand, within Shewana3_0268 at 302.047 kb on - strand, within Shewana3_0268 at 302.141 kb on - strand, within Shewana3_0268 at 302.182 kb on + strand, within Shewana3_0268 at 302.291 kb on + strand, within Shewana3_0268 at 302.299 kb on + strand, within Shewana3_0268 at 302.324 kb on + strand, within Shewana3_0268 at 302.353 kb on + strand, within Shewana3_0268 at 302.415 kb on - strand, within Shewana3_0268 at 302.856 kb on + strand at 302.864 kb on - strand at 302.912 kb on + strand at 302.912 kb on + strand at 303.238 kb on + strand, within Shewana3_0269 at 303.257 kb on - strand, within Shewana3_0269 at 303.318 kb on + strand, within Shewana3_0269 at 303.371 kb on - strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.393 kb on - strand, within Shewana3_0269 at 303.505 kb on - strand, within Shewana3_0269
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 300,743 - Shewana3_0267 0.10 -0.7 300,743 - Shewana3_0267 0.10 +0.9 300,764 + Shewana3_0267 0.15 -0.2 300,881 + Shewana3_0267 0.45 -0.1 300,881 + Shewana3_0267 0.45 +0.0 300,975 + Shewana3_0267 0.69 -0.2 301,004 - Shewana3_0267 0.77 +0.9 301,075 - +0.1 301,771 + Shewana3_0268 0.12 +0.1 301,796 - Shewana3_0268 0.15 +1.4 301,809 + Shewana3_0268 0.17 +0.6 301,819 + Shewana3_0268 0.18 +0.1 301,855 + Shewana3_0268 0.23 +0.4 301,892 - Shewana3_0268 0.27 +0.2 301,897 + Shewana3_0268 0.28 +0.2 301,915 + Shewana3_0268 0.30 -0.1 301,923 - Shewana3_0268 0.31 -0.1 301,940 + Shewana3_0268 0.33 +0.1 301,953 - Shewana3_0268 0.34 +0.2 302,047 - Shewana3_0268 0.45 +0.1 302,141 - Shewana3_0268 0.57 +0.4 302,182 + Shewana3_0268 0.61 +0.2 302,291 + Shewana3_0268 0.74 +0.1 302,299 + Shewana3_0268 0.75 -0.1 302,324 + Shewana3_0268 0.78 +0.2 302,353 + Shewana3_0268 0.82 -0.1 302,415 - Shewana3_0268 0.89 +0.0 302,856 + -0.6 302,864 - -0.4 302,912 + -0.1 302,912 + +0.6 303,238 + Shewana3_0269 0.29 -0.1 303,257 - Shewana3_0269 0.31 +0.0 303,318 + Shewana3_0269 0.35 -0.3 303,371 - Shewana3_0269 0.38 +0.2 303,385 + Shewana3_0269 0.39 +0.2 303,385 + Shewana3_0269 0.39 -0.1 303,393 - Shewana3_0269 0.40 -0.2 303,505 - Shewana3_0269 0.48 -1.6
Or see this region's nucleotide sequence