Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2931

Experiment: MoYLS4 with HQNO 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2930 and DVU2931 are separated by 13 nucleotidesDVU2931 and DVU2932 are separated by 33 nucleotidesDVU2932 and DVU2933 are separated by 11 nucleotides DVU2930: DVU2930 - hypothetical protein (TIGR), at 3,033,771 to 3,034,211 DVU2930 DVU2931: DVU2931 - sensory box histidine kinase (TIGR), at 3,034,225 to 3,036,426 DVU2931 DVU2932: DVU2932 - conserved hypothetical protein TIGR01777 (TIGR), at 3,036,460 to 3,037,386 DVU2932 DVU2933: DVU2933 - response regulator/sensory box/HDIG domain protein (TIGR), at 3,037,398 to 3,038,774 DVU2933 Position (kb) 3034 3035 3036 3037Strain fitness (log2 ratio) -2 -1 0 1at 3033.350 kb on + strandat 3033.528 kb on - strandat 3033.534 kb on + strandat 3033.613 kb on - strandat 3033.837 kb on + strand, within DVU2930at 3034.322 kb on + strandat 3035.243 kb on + strand, within DVU2931at 3036.436 kb on + strandat 3036.565 kb on - strand, within DVU2932at 3036.614 kb on + strand, within DVU2932at 3036.661 kb on + strand, within DVU2932at 3036.712 kb on + strand, within DVU2932at 3036.802 kb on + strand, within DVU2932at 3036.836 kb on + strand, within DVU2932at 3036.853 kb on + strand, within DVU2932at 3036.939 kb on + strand, within DVU2932at 3037.057 kb on + strand, within DVU2932at 3037.194 kb on + strand, within DVU2932at 3037.194 kb on + strand, within DVU2932at 3037.197 kb on - strand, within DVU2932at 3037.201 kb on + strand, within DVU2932at 3037.206 kb on + strand, within DVU2932at 3037.206 kb on + strand, within DVU2932at 3037.209 kb on - strand, within DVU2932at 3037.209 kb on - strand, within DVU2932at 3037.209 kb on - strand, within DVU2932at 3037.300 kb on - strandat 3037.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with HQNO 50uM
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3,033,350 + -0.4
3,033,528 - -1.0
3,033,534 + -0.3
3,033,613 - -0.1
3,033,837 + DVU2930 0.15 +0.9
3,034,322 + -1.1
3,035,243 + DVU2931 0.46 +0.9
3,036,436 + +0.3
3,036,565 - DVU2932 0.11 -1.5
3,036,614 + DVU2932 0.17 -2.5
3,036,661 + DVU2932 0.22 -1.4
3,036,712 + DVU2932 0.27 -1.2
3,036,802 + DVU2932 0.37 -0.6
3,036,836 + DVU2932 0.41 -1.5
3,036,853 + DVU2932 0.42 -1.2
3,036,939 + DVU2932 0.52 -0.9
3,037,057 + DVU2932 0.64 -1.2
3,037,194 + DVU2932 0.79 -0.8
3,037,194 + DVU2932 0.79 -0.9
3,037,197 - DVU2932 0.80 -1.1
3,037,201 + DVU2932 0.80 -0.8
3,037,206 + DVU2932 0.80 +0.3
3,037,206 + DVU2932 0.80 -0.3
3,037,209 - DVU2932 0.81 +0.1
3,037,209 - DVU2932 0.81 -1.2
3,037,209 - DVU2932 0.81 -1.8
3,037,300 - -1.2
3,037,400 - -0.8

Or see this region's nucleotide sequence