Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2557

Experiment: A22 0.000341796875 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.000341796875 mg/ml
2,634,640	-	hoxH	Synpcc7942_2555	0.69	-2.5
2,634,648	+	hoxH	Synpcc7942_2555	0.69	-2.0
2,634,699	+	hoxH	Synpcc7942_2555	0.73	+3.2
2,634,766	-				-0.5
2,634,775	+	hoxH	Synpcc7942_2555	0.78	+0.6
2,634,778	-	hoxH	Synpcc7942_2555	0.78	-1.0
2,634,780	+	hoxH	Synpcc7942_2555	0.79	-0.5
2,634,832	+	hoxH	Synpcc7942_2555	0.82	+0.3
2,634,835	-	hoxH	Synpcc7942_2555	0.82	+0.4
2,634,876	+	hoxH	Synpcc7942_2555	0.85	+1.0
2,634,884	-	hoxH	Synpcc7942_2555	0.86	-0.5
2,634,907	-	hoxH	Synpcc7942_2555	0.87	-1.3
2,634,917	+	hoxH	Synpcc7942_2555	0.88	+2.3
2,634,947	+				+1.2
2,634,955	-				-2.0
2,634,978	-				-1.0
2,634,980	+				-2.0
2,634,993	-				+1.0
2,635,003	-				+0.7
2,635,006	+				-1.0
2,635,014	-				-1.0
2,635,083	+				-2.3
2,635,083	+				-1.3
2,635,091	-				+4.7
2,635,114	+				+1.6
2,635,152	-	hoxY	Synpcc7942_2556	0.10	+2.9
2,635,195	+	hoxY	Synpcc7942_2556	0.18	+0.2
2,635,195	+	hoxY	Synpcc7942_2556	0.18	-1.3
2,635,244	-	hoxY	Synpcc7942_2556	0.27	-4.2
2,635,303	-	hoxY	Synpcc7942_2556	0.37	+0.0
2,635,305	+	hoxY	Synpcc7942_2556	0.38	+0.3
2,635,305	+	hoxY	Synpcc7942_2556	0.38	+0.8
2,635,313	-	hoxY	Synpcc7942_2556	0.39	-1.0
2,635,313	-	hoxY	Synpcc7942_2556	0.39	-1.8
2,635,313	-	hoxY	Synpcc7942_2556	0.39	+1.0
2,635,313	-	hoxY	Synpcc7942_2556	0.39	+2.9
2,635,313	-	hoxY	Synpcc7942_2556	0.39	+0.0
2,635,313	-	hoxY	Synpcc7942_2556	0.39	-0.8
2,635,313	-	hoxY	Synpcc7942_2556	0.39	-1.8
2,635,313	-	hoxY	Synpcc7942_2556	0.39	-1.0
2,635,313	-	hoxY	Synpcc7942_2556	0.39	-2.4
2,635,318	-	hoxY	Synpcc7942_2556	0.40	+2.9
2,635,318	-	hoxY	Synpcc7942_2556	0.40	+1.8
2,635,321	+	hoxY	Synpcc7942_2556	0.41	-1.8
2,635,326	+	hoxY	Synpcc7942_2556	0.41	-1.0
2,635,329	-	hoxY	Synpcc7942_2556	0.42	-1.5
2,635,329	-	hoxY	Synpcc7942_2556	0.42	-2.0
2,635,354	-	hoxY	Synpcc7942_2556	0.46	+1.0
2,635,365	+	hoxY	Synpcc7942_2556	0.48	-2.0
2,635,395	+	hoxY	Synpcc7942_2556	0.54	+1.0
2,635,441	-	hoxY	Synpcc7942_2556	0.62	-0.1
2,635,441	-	hoxY	Synpcc7942_2556	0.62	+2.1
2,635,441	-	hoxY	Synpcc7942_2556	0.62	-2.1
2,635,451	-	hoxY	Synpcc7942_2556	0.64	-1.3
2,635,480	-	hoxY	Synpcc7942_2556	0.69	+0.6
2,635,488	+	hoxY	Synpcc7942_2556	0.71	-0.5
2,635,494	-	hoxY	Synpcc7942_2556	0.72	-0.6
2,635,504	-	hoxY	Synpcc7942_2556	0.74	+1.0
2,635,505	-	hoxY	Synpcc7942_2556	0.74	-0.5
2,635,532	-	hoxY	Synpcc7942_2556	0.79	-2.0
2,635,537	-	hoxY	Synpcc7942_2556	0.79	-2.1
2,635,549	-	hoxY	Synpcc7942_2556	0.82	-0.1
2,635,643	-				-1.4
2,635,658	+				+0.8
2,635,679	-				+0.2
2,635,734	-	hoxU	Synpcc7942_2557	0.13	-2.0
2,635,752	+	hoxU	Synpcc7942_2557	0.16	-1.3
2,635,782	+	hoxU	Synpcc7942_2557	0.20	+0.7
2,635,790	-	hoxU	Synpcc7942_2557	0.21	+3.3
2,635,795	+	hoxU	Synpcc7942_2557	0.22	-2.1
2,635,795	+	hoxU	Synpcc7942_2557	0.22	+2.2
2,635,795	+	hoxU	Synpcc7942_2557	0.22	+2.3
2,635,803	-	hoxU	Synpcc7942_2557	0.23	-1.0
2,635,803	-	hoxU	Synpcc7942_2557	0.23	+1.6
2,635,803	-	hoxU	Synpcc7942_2557	0.23	-2.1
2,635,803	-	hoxU	Synpcc7942_2557	0.23	-0.5
2,635,852	+	hoxU	Synpcc7942_2557	0.30	+0.0
2,635,860	-	hoxU	Synpcc7942_2557	0.31	-2.5
2,635,860	-	hoxU	Synpcc7942_2557	0.31	-4.1
2,635,860	-	hoxU	Synpcc7942_2557	0.31	-1.5
2,635,860	-	hoxU	Synpcc7942_2557	0.31	+3.4
2,635,867	+	hoxU	Synpcc7942_2557	0.32	-2.2
2,635,886	+	hoxU	Synpcc7942_2557	0.35	+1.0
2,635,886	+	hoxU	Synpcc7942_2557	0.35	+0.5
2,635,894	-	hoxU	Synpcc7942_2557	0.36	+1.3
2,635,894	-	hoxU	Synpcc7942_2557	0.36	+2.9
2,635,936	-	hoxU	Synpcc7942_2557	0.42	-1.5
2,635,972	+	hoxU	Synpcc7942_2557	0.47	+2.7
2,635,973	+	hoxU	Synpcc7942_2557	0.47	-0.5
2,635,973	+				+0.0
2,635,978	+	hoxU	Synpcc7942_2557	0.47	-1.0
2,635,980	-	hoxU	Synpcc7942_2557	0.48	-2.1
2,635,986	+	hoxU	Synpcc7942_2557	0.49	+1.0
2,635,986	-	hoxU	Synpcc7942_2557	0.49	-0.8
2,636,016	+	hoxU	Synpcc7942_2557	0.53	-0.5
2,636,039	+	hoxU	Synpcc7942_2557	0.56	+0.0
2,636,195	+	hoxU	Synpcc7942_2557	0.78	-0.3
2,636,318	+				+0.5
2,636,326	-				-2.5
2,636,340	+				+0.0
2,636,340	+				+0.0
2,636,340	+				+1.5
2,636,360	-				-1.3
2,636,366	+				+0.4
2,636,371	+				+0.7
2,636,384	-				-1.0
2,636,395	-				-1.3
2,636,409	-				-1.3
2,636,411	+				-0.5
2,636,414	-				+1.4
2,636,419	+				+3.3
2,636,419	+				-1.1
2,636,419	+				-5.0
2,636,419	+				-0.4
2,636,419	+				+0.0
2,636,427	-				+2.6
2,636,427	-				-1.0
2,636,427	-				-1.8
2,636,427	-				+1.6
2,636,436	+				+2.5
2,636,439	-				-1.0
2,636,439	-				-1.0
2,636,439	-				-2.9
2,636,440	-				+1.0
2,636,474	-				-0.5
2,636,485	+				+0.0
2,636,503	-				-2.5
2,636,503	-				-2.1
2,636,549	-				+6.4
2,636,595	+				+4.0
2,636,610	+				+4.3
2,636,800	+	nifS	Synpcc7942_2558	0.24	+4.6
2,636,802	-	nifS	Synpcc7942_2558	0.24	+6.1
2,636,810	-	nifS	Synpcc7942_2558	0.25	+3.8
2,636,989	-	nifS	Synpcc7942_2558	0.40	+1.3
2,637,125	+	nifS	Synpcc7942_2558	0.52	+3.3
2,637,140	-	nifS	Synpcc7942_2558	0.53	+0.6
2,637,188	-	nifS	Synpcc7942_2558	0.57	+5.8
2,637,269	+	nifS	Synpcc7942_2558	0.64	+4.8
2,637,316	-	nifS	Synpcc7942_2558	0.68	+3.9