Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2474

Experiment: A22 0.000341796875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_2473 and Synpcc7942_2474 are separated by 55 nucleotidesSynpcc7942_2474 and argH are separated by 83 nucleotides Synpcc7942_2473: Synpcc7942_2473 - serine phosphatase, at 2,555,003 to 2,556,391 _2473 Synpcc7942_2474: Synpcc7942_2474 - hypothetical protein, at 2,556,447 to 2,556,608 _2474 Synpcc7942_2475: argH - argininosuccinate lyase, at 2,556,692 to 2,558,116 argH Position (kb) 2556 2557Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2556.407 kb on - strandat 2556.418 kb on + strandat 2556.418 kb on + strandat 2556.426 kb on - strandat 2556.426 kb on - strandat 2556.426 kb on - strandat 2556.477 kb on - strand, within Synpcc7942_2474at 2556.511 kb on + strand, within Synpcc7942_2474at 2556.532 kb on + strand, within Synpcc7942_2474at 2556.537 kb on + strand, within Synpcc7942_2474at 2556.542 kb on + strand, within Synpcc7942_2474at 2556.542 kb on + strand, within Synpcc7942_2474at 2556.542 kb on + strand, within Synpcc7942_2474at 2556.542 kb on + strand, within Synpcc7942_2474at 2556.542 kb on + strand, within Synpcc7942_2474at 2556.542 kb on + strand, within Synpcc7942_2474at 2556.542 kb on + strand, within Synpcc7942_2474at 2556.542 kb on + strand, within Synpcc7942_2474at 2556.542 kb on + strand, within Synpcc7942_2474at 2556.550 kb on - strand, within Synpcc7942_2474at 2556.550 kb on - strand, within Synpcc7942_2474at 2556.550 kb on - strand, within Synpcc7942_2474at 2556.550 kb on - strand, within Synpcc7942_2474at 2556.550 kb on - strand, within Synpcc7942_2474at 2556.563 kb on - strand, within Synpcc7942_2474at 2556.565 kb on - strand, within Synpcc7942_2474at 2556.597 kb on + strandat 2556.615 kb on - strandat 2556.641 kb on - strandat 2556.658 kb on + strandat 2556.660 kb on + strandat 2556.671 kb on - strandat 2556.672 kb on + strandat 2556.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml
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2,556,407 - +3.7
2,556,418 + +0.0
2,556,418 + +1.7
2,556,426 - -2.3
2,556,426 - +0.5
2,556,426 - +1.8
2,556,477 - Synpcc7942_2474 0.19 -2.4
2,556,511 + Synpcc7942_2474 0.40 -0.5
2,556,532 + Synpcc7942_2474 0.52 +0.0
2,556,537 + Synpcc7942_2474 0.56 +3.1
2,556,542 + Synpcc7942_2474 0.59 +0.0
2,556,542 + Synpcc7942_2474 0.59 +0.0
2,556,542 + Synpcc7942_2474 0.59 +2.3
2,556,542 + Synpcc7942_2474 0.59 +1.6
2,556,542 + Synpcc7942_2474 0.59 -3.4
2,556,542 + Synpcc7942_2474 0.59 -1.8
2,556,542 + Synpcc7942_2474 0.59 +0.0
2,556,542 + Synpcc7942_2474 0.59 -2.0
2,556,542 + Synpcc7942_2474 0.59 -1.5
2,556,550 - Synpcc7942_2474 0.64 -1.5
2,556,550 - Synpcc7942_2474 0.64 -0.5
2,556,550 - Synpcc7942_2474 0.64 +1.7
2,556,550 - Synpcc7942_2474 0.64 -0.8
2,556,550 - Synpcc7942_2474 0.64 +0.6
2,556,563 - Synpcc7942_2474 0.72 +2.3
2,556,565 - Synpcc7942_2474 0.73 +1.6
2,556,597 + -2.3
2,556,615 - +3.9
2,556,641 - -1.5
2,556,658 + +3.2
2,556,660 + +1.4
2,556,671 - -0.5
2,556,672 + +2.7
2,556,672 + +0.0

Or see this region's nucleotide sequence