Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2207

Experiment: A22 0.000341796875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpmE and rpsI are separated by 30 nucleotidesrpsI and rplM overlap by 1 nucleotidesrplM and truA are separated by 15 nucleotidestruA and rplQ are separated by 2 nucleotidesrplQ and rpoA are separated by 35 nucleotides Synpcc7942_2204: rpmE - 50S ribosomal protein L31, at 2,284,391 to 2,284,624 rpmE Synpcc7942_2205: rpsI - 30S ribosomal protein S9, at 2,284,655 to 2,285,062 rpsI Synpcc7942_2206: rplM - 50S ribosomal protein L13, at 2,285,062 to 2,285,517 rplM Synpcc7942_2207: truA - tRNA pseudouridine synthase A, at 2,285,533 to 2,286,417 truA Synpcc7942_2208: rplQ - 50S ribosomal protein L17, at 2,286,420 to 2,286,770 rplQ Synpcc7942_2209: rpoA - DNA-directed RNA polymerase subunit alpha, at 2,286,806 to 2,287,735 rpoA Position (kb) 2285 2286 2287Strain fitness (log2 ratio) -2 -1 0 1at 2285.060 kb on + strandat 2286.418 kb on + strandat 2286.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml
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2,285,060 + +1.2
2,286,418 + -2.7
2,286,423 + +0.2

Or see this region's nucleotide sequence