Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobB and cumB are separated by 70 nucleotides cumB and mmsB are separated by 4 nucleotides
Synpcc7942_1855: cobB - cobyrinic acid a,c-diamide synthase, at 1,923,883 to 1,925,253
cobB
Synpcc7942_1856: cumB - tRNA-adenosine deaminase, at 1,925,324 to 1,925,830
cumB
Synpcc7942_1857: mmsB - 3-hydroxyacid dehydrogenase, at 1,925,835 to 1,926,701
mmsB
Position (kb) 1925
1926 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 1925.254 kb on - strand at 1925.880 kb on - strand at 1925.880 kb on - strand at 1925.901 kb on - strand at 1925.937 kb on - strand, within mmsB at 1925.944 kb on + strand, within mmsB at 1925.960 kb on - strand, within mmsB at 1925.968 kb on - strand, within mmsB at 1926.034 kb on + strand, within mmsB at 1926.074 kb on - strand, within mmsB at 1926.108 kb on + strand, within mmsB at 1926.121 kb on + strand, within mmsB at 1926.130 kb on + strand, within mmsB at 1926.140 kb on + strand, within mmsB at 1926.172 kb on - strand, within mmsB at 1926.214 kb on + strand, within mmsB at 1926.217 kb on - strand, within mmsB at 1926.231 kb on - strand, within mmsB at 1926.238 kb on + strand, within mmsB at 1926.244 kb on + strand, within mmsB at 1926.252 kb on - strand, within mmsB at 1926.252 kb on - strand, within mmsB at 1926.255 kb on + strand, within mmsB at 1926.270 kb on + strand, within mmsB at 1926.275 kb on + strand, within mmsB at 1926.275 kb on + strand, within mmsB at 1926.284 kb on - strand, within mmsB at 1926.284 kb on - strand, within mmsB at 1926.293 kb on - strand, within mmsB at 1926.298 kb on - strand, within mmsB at 1926.298 kb on - strand, within mmsB at 1926.303 kb on - strand at 1926.314 kb on + strand, within mmsB at 1926.314 kb on - strand, within mmsB at 1926.350 kb on - strand, within mmsB at 1926.350 kb on - strand, within mmsB at 1926.350 kb on - strand, within mmsB at 1926.355 kb on - strand, within mmsB at 1926.366 kb on - strand, within mmsB at 1926.405 kb on + strand, within mmsB at 1926.413 kb on - strand, within mmsB at 1926.413 kb on - strand, within mmsB at 1926.429 kb on + strand at 1926.429 kb on + strand, within mmsB at 1926.480 kb on - strand, within mmsB at 1926.482 kb on - strand, within mmsB at 1926.497 kb on + strand, within mmsB at 1926.502 kb on + strand, within mmsB at 1926.510 kb on + strand, within mmsB at 1926.510 kb on + strand, within mmsB at 1926.518 kb on + strand, within mmsB at 1926.518 kb on - strand, within mmsB at 1926.518 kb on - strand, within mmsB at 1926.518 kb on - strand, within mmsB at 1926.518 kb on - strand, within mmsB at 1926.583 kb on + strand, within mmsB at 1926.583 kb on + strand, within mmsB at 1926.599 kb on + strand, within mmsB at 1926.640 kb on - strand at 1926.672 kb on - strand at 1926.683 kb on - strand at 1926.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 1,925,254 - -1.5 1,925,880 - -1.8 1,925,880 - -1.3 1,925,901 - +5.4 1,925,937 - mmsB Synpcc7942_1857 0.12 -2.3 1,925,944 + mmsB Synpcc7942_1857 0.13 +1.8 1,925,960 - mmsB Synpcc7942_1857 0.14 +0.6 1,925,968 - mmsB Synpcc7942_1857 0.15 -2.0 1,926,034 + mmsB Synpcc7942_1857 0.23 -5.4 1,926,074 - mmsB Synpcc7942_1857 0.28 +2.3 1,926,108 + mmsB Synpcc7942_1857 0.31 +1.0 1,926,121 + mmsB Synpcc7942_1857 0.33 +2.9 1,926,130 + mmsB Synpcc7942_1857 0.34 -1.2 1,926,140 + mmsB Synpcc7942_1857 0.35 -0.5 1,926,172 - mmsB Synpcc7942_1857 0.39 +2.0 1,926,214 + mmsB Synpcc7942_1857 0.44 -1.3 1,926,217 - mmsB Synpcc7942_1857 0.44 +1.0 1,926,231 - mmsB Synpcc7942_1857 0.46 -0.5 1,926,238 + mmsB Synpcc7942_1857 0.46 -0.5 1,926,244 + mmsB Synpcc7942_1857 0.47 +1.0 1,926,252 - mmsB Synpcc7942_1857 0.48 -2.3 1,926,252 - mmsB Synpcc7942_1857 0.48 +1.8 1,926,255 + mmsB Synpcc7942_1857 0.48 -1.4 1,926,270 + mmsB Synpcc7942_1857 0.50 +1.0 1,926,275 + mmsB Synpcc7942_1857 0.51 +2.4 1,926,275 + mmsB Synpcc7942_1857 0.51 -1.8 1,926,284 - mmsB Synpcc7942_1857 0.52 +1.2 1,926,284 - mmsB Synpcc7942_1857 0.52 +3.6 1,926,293 - mmsB Synpcc7942_1857 0.53 -3.0 1,926,298 - mmsB Synpcc7942_1857 0.53 +2.2 1,926,298 - mmsB Synpcc7942_1857 0.53 +2.0 1,926,303 - +1.0 1,926,314 + mmsB Synpcc7942_1857 0.55 +4.2 1,926,314 - mmsB Synpcc7942_1857 0.55 +0.0 1,926,350 - mmsB Synpcc7942_1857 0.59 -1.3 1,926,350 - mmsB Synpcc7942_1857 0.59 -0.3 1,926,350 - mmsB Synpcc7942_1857 0.59 -1.8 1,926,355 - mmsB Synpcc7942_1857 0.60 -1.5 1,926,366 - mmsB Synpcc7942_1857 0.61 +0.8 1,926,405 + mmsB Synpcc7942_1857 0.66 -3.2 1,926,413 - mmsB Synpcc7942_1857 0.67 +1.2 1,926,413 - mmsB Synpcc7942_1857 0.67 +0.2 1,926,429 + -1.5 1,926,429 + mmsB Synpcc7942_1857 0.69 +1.4 1,926,480 - mmsB Synpcc7942_1857 0.74 -0.4 1,926,482 - mmsB Synpcc7942_1857 0.75 -1.0 1,926,497 + mmsB Synpcc7942_1857 0.76 +1.0 1,926,502 + mmsB Synpcc7942_1857 0.77 +0.0 1,926,510 + mmsB Synpcc7942_1857 0.78 +1.0 1,926,510 + mmsB Synpcc7942_1857 0.78 +1.5 1,926,518 + mmsB Synpcc7942_1857 0.79 -1.3 1,926,518 - mmsB Synpcc7942_1857 0.79 +1.4 1,926,518 - mmsB Synpcc7942_1857 0.79 -1.2 1,926,518 - mmsB Synpcc7942_1857 0.79 +1.0 1,926,518 - mmsB Synpcc7942_1857 0.79 -1.1 1,926,583 + mmsB Synpcc7942_1857 0.86 -1.0 1,926,583 + mmsB Synpcc7942_1857 0.86 +0.0 1,926,599 + mmsB Synpcc7942_1857 0.88 -2.1 1,926,640 - -2.0 1,926,672 - -2.0 1,926,683 - -0.5 1,926,706 - +1.6
Or see this region's nucleotide sequence