Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1729

Experiment: A22 0.000341796875 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.000341796875 mg/ml
1,800,194	+				-2.0
1,800,194	+				-1.3
1,800,229	+				-0.0
1,800,231	+				+4.3
1,800,249	-				-2.5
1,800,250	+				-0.6
1,800,250	+				-1.6
1,800,283	-				-1.6
1,800,294	+				+1.2
1,800,350	+				+2.7
1,800,358	-				-0.0
1,800,369	-				+3.5
1,800,400	+				-1.8
1,800,408	-				+1.0
1,800,418	-				+1.0
1,800,446	+		Synpcc7942_1728	0.14	+0.6
1,800,446	+		Synpcc7942_1728	0.14	-1.0
1,800,454	-		Synpcc7942_1728	0.16	+3.8
1,800,454	-		Synpcc7942_1728	0.16	+1.0
1,800,456	+		Synpcc7942_1728	0.16	+1.0
1,800,464	-		Synpcc7942_1728	0.18	+3.2
1,800,469	-		Synpcc7942_1728	0.19	-2.9
1,800,507	+		Synpcc7942_1728	0.26	+1.6
1,800,507	+		Synpcc7942_1728	0.26	-2.7
1,800,507	+		Synpcc7942_1728	0.26	-2.0
1,800,507	+		Synpcc7942_1728	0.26	+1.0
1,800,507	+		Synpcc7942_1728	0.26	-2.5
1,800,507	+		Synpcc7942_1728	0.26	+0.3
1,800,508	-		Synpcc7942_1728	0.26	-0.4
1,800,515	-		Synpcc7942_1728	0.28	+1.3
1,800,515	-		Synpcc7942_1728	0.28	+3.3
1,800,515	-		Synpcc7942_1728	0.28	+1.6
1,800,515	-		Synpcc7942_1728	0.28	-2.5
1,800,524	+				-1.0
1,800,553	+		Synpcc7942_1728	0.35	-1.0
1,800,568	+		Synpcc7942_1728	0.38	-2.2
1,800,574	+		Synpcc7942_1728	0.39	-0.6
1,800,574	+		Synpcc7942_1728	0.39	+1.0
1,800,582	-		Synpcc7942_1728	0.41	+1.0
1,800,582	-		Synpcc7942_1728	0.41	+2.8
1,800,582	-		Synpcc7942_1728	0.41	-2.0
1,800,582	-		Synpcc7942_1728	0.41	+1.0
1,800,608	+		Synpcc7942_1728	0.46	-2.9
1,800,621	+		Synpcc7942_1728	0.48	-1.0
1,800,649	+		Synpcc7942_1728	0.54	-0.3
1,800,649	+		Synpcc7942_1728	0.54	+3.1
1,800,650	-		Synpcc7942_1728	0.54	-0.0
1,800,666	+		Synpcc7942_1728	0.57	+1.4
1,800,669	-		Synpcc7942_1728	0.58	+1.0
1,800,674	-		Synpcc7942_1728	0.59	-1.6
1,800,692	+		Synpcc7942_1728	0.62	-2.2
1,800,695	-		Synpcc7942_1728	0.63	-1.3
1,800,735	-		Synpcc7942_1728	0.70	+1.0
1,800,735	-		Synpcc7942_1728	0.70	+3.6
1,800,773	+		Synpcc7942_1728	0.78	+1.0
1,800,773	+		Synpcc7942_1728	0.78	+2.5
1,800,775	+		Synpcc7942_1728	0.78	+1.6
1,800,781	-		Synpcc7942_1728	0.79	-2.2
1,800,801	-		Synpcc7942_1728	0.83	+1.1
1,800,819	-		Synpcc7942_1728	0.87	-0.3
1,800,820	-		Synpcc7942_1728	0.87	-1.8
1,800,820	-		Synpcc7942_1728	0.87	-1.6
1,800,832	+		Synpcc7942_1728	0.89	-1.3
1,800,850	-				-1.6
1,800,881	-				-2.2
1,800,894	+				+1.0
1,800,894	+				+1.6
1,800,898	-				-1.0
1,800,902	-				-0.0
1,800,904	+				-2.4
1,800,904	+				+1.0
1,800,904	+				-1.3
1,800,912	-				-0.0
1,800,912	-				+1.0
1,800,925	+				-1.0
1,800,948	+				+3.7
1,800,948	+				+1.5
1,800,958	+				-3.0
1,800,966	-				-0.5
1,801,002	+				-0.6
1,801,002	+				-0.0
1,801,002	+				-1.3
1,801,002	+				-0.0
1,801,002	+				-1.6
1,801,002	-				-1.8
1,801,015	-				-0.0
1,801,015	-	kdpD	Synpcc7942_1729	0.11	+1.0
1,801,019	+	kdpD	Synpcc7942_1729	0.11	-1.8
1,801,027	-	kdpD	Synpcc7942_1729	0.12	+2.6
1,801,113	+	kdpD	Synpcc7942_1729	0.20	-0.6
1,801,116	-	kdpD	Synpcc7942_1729	0.20	+1.6
1,801,159	+	kdpD	Synpcc7942_1729	0.24	-1.3
1,801,164	+	kdpD	Synpcc7942_1729	0.24	-0.0
1,801,167	-	kdpD	Synpcc7942_1729	0.25	+4.0
1,801,167	-	kdpD	Synpcc7942_1729	0.25	-0.0
1,801,172	-	kdpD	Synpcc7942_1729	0.25	+0.4
1,801,177	-	kdpD	Synpcc7942_1729	0.26	+1.0
1,801,187	+	kdpD	Synpcc7942_1729	0.26	-1.4
1,801,190	-	kdpD	Synpcc7942_1729	0.27	+0.7
1,801,195	-	kdpD	Synpcc7942_1729	0.27	-2.8
1,801,202	-	kdpD	Synpcc7942_1729	0.28	+3.8
1,801,213	+	kdpD	Synpcc7942_1729	0.29	+2.7
1,801,214	-	kdpD	Synpcc7942_1729	0.29	-2.0
1,801,241	-	kdpD	Synpcc7942_1729	0.31	+0.3
1,801,257	+	kdpD	Synpcc7942_1729	0.33	-0.0
1,801,257	+	kdpD	Synpcc7942_1729	0.33	-2.9
1,801,264	-	kdpD	Synpcc7942_1729	0.33	-0.4
1,801,265	+	kdpD	Synpcc7942_1729	0.33	-0.0
1,801,289	-	kdpD	Synpcc7942_1729	0.36	+1.0
1,801,316	-	kdpD	Synpcc7942_1729	0.38	-1.0
1,801,327	-	kdpD	Synpcc7942_1729	0.39	-0.1
1,801,331	-	kdpD	Synpcc7942_1729	0.39	-1.3
1,801,410	+	kdpD	Synpcc7942_1729	0.46	-1.7
1,801,410	+	kdpD	Synpcc7942_1729	0.46	-2.3
1,801,411	-	kdpD	Synpcc7942_1729	0.47	-1.8
1,801,411	-	kdpD	Synpcc7942_1729	0.47	-0.2
1,801,411	-	kdpD	Synpcc7942_1729	0.47	+3.1
1,801,457	-	kdpD	Synpcc7942_1729	0.51	+2.8
1,801,497	+	kdpD	Synpcc7942_1729	0.54	+0.8
1,801,507	+	kdpD	Synpcc7942_1729	0.55	+1.1
1,801,539	+	kdpD	Synpcc7942_1729	0.58	-0.0
1,801,547	-	kdpD	Synpcc7942_1729	0.59	+2.0
1,801,561	+	kdpD	Synpcc7942_1729	0.60	-0.0
1,801,563	+	kdpD	Synpcc7942_1729	0.60	+0.3
1,801,581	+	kdpD	Synpcc7942_1729	0.62	-1.6
1,801,581	+	kdpD	Synpcc7942_1729	0.62	+1.3
1,801,581	+	kdpD	Synpcc7942_1729	0.62	+3.6
1,801,583	+	kdpD	Synpcc7942_1729	0.62	+1.0
1,801,589	-	kdpD	Synpcc7942_1729	0.63	+1.0
1,801,589	-	kdpD	Synpcc7942_1729	0.63	+1.0
1,801,590	+	kdpD	Synpcc7942_1729	0.63	-0.6
1,801,595	+	kdpD	Synpcc7942_1729	0.63	+0.7
1,801,595	+	kdpD	Synpcc7942_1729	0.63	-0.1
1,801,600	+	kdpD	Synpcc7942_1729	0.64	-1.6
1,801,603	-	kdpD	Synpcc7942_1729	0.64	+3.0
1,801,603	-	kdpD	Synpcc7942_1729	0.64	-1.2
1,801,614	-	kdpD	Synpcc7942_1729	0.65	+2.1
1,801,654	+	kdpD	Synpcc7942_1729	0.68	+3.3
1,801,670	-	kdpD	Synpcc7942_1729	0.70	+1.1
1,801,686	-	kdpD	Synpcc7942_1729	0.71	+4.3
1,801,686	-	kdpD	Synpcc7942_1729	0.71	+3.7
1,801,722	+	kdpD	Synpcc7942_1729	0.74	+2.4
1,801,738	-	kdpD	Synpcc7942_1729	0.76	-0.6
1,801,768	+	kdpD	Synpcc7942_1729	0.79	-1.6
1,801,768	+	kdpD	Synpcc7942_1729	0.79	-1.5
1,801,796	-	kdpD	Synpcc7942_1729	0.81	-0.0
1,801,805	-	kdpD	Synpcc7942_1729	0.82	+1.1
1,801,842	+	kdpD	Synpcc7942_1729	0.85	-1.8
1,801,852	+	kdpD	Synpcc7942_1729	0.86	+1.0
1,801,856	-	kdpD	Synpcc7942_1729	0.87	+1.8
1,801,858	-	kdpD	Synpcc7942_1729	0.87	-1.7
1,801,878	+	kdpD	Synpcc7942_1729	0.88	-1.6
1,801,893	-	kdpD	Synpcc7942_1729	0.90	+0.1
1,801,893	-	kdpD	Synpcc7942_1729	0.90	+1.3
1,801,938	-				+1.0
1,801,944	-				-0.6
1,801,952	-				+3.3
1,801,959	-				-3.5
1,802,020	+				+2.8
1,802,022	+				+0.3
1,802,028	-				-0.8
1,802,030	-				-1.3
1,802,030	-				-2.6
1,802,030	-				+2.0
1,802,040	-				-1.3
1,802,040	-				-0.0
1,802,042	+				-0.3
1,802,080	+				-2.2
1,802,080	+				-1.6
1,802,088	-				+2.6
1,802,088	-				-2.3
1,802,093	-				-1.0
1,802,123	-		Synpcc7942_1730	0.12	+0.7
1,802,135	-		Synpcc7942_1730	0.14	+0.4
1,802,144	-		Synpcc7942_1730	0.16	+3.9
1,802,174	+		Synpcc7942_1730	0.21	-0.6
1,802,178	-		Synpcc7942_1730	0.22	+0.6
1,802,188	+		Synpcc7942_1730	0.23	+2.8
1,802,196	-				+1.0
1,802,201	-		Synpcc7942_1730	0.26	-0.0
1,802,252	-		Synpcc7942_1730	0.34	+4.4
1,802,252	-		Synpcc7942_1730	0.34	+0.9
1,802,262	-		Synpcc7942_1730	0.36	+0.8
1,802,294	+		Synpcc7942_1730	0.41	+2.9
1,802,309	+		Synpcc7942_1730	0.44	-2.3
1,802,309	+		Synpcc7942_1730	0.44	-3.9
1,802,309	+		Synpcc7942_1730	0.44	-1.8
1,802,316	+		Synpcc7942_1730	0.45	+0.5
1,802,317	-		Synpcc7942_1730	0.45	+1.9
1,802,317	-		Synpcc7942_1730	0.45	-1.6
1,802,325	+		Synpcc7942_1730	0.47	+4.6
1,802,345	+		Synpcc7942_1730	0.50	-1.6
1,802,351	-		Synpcc7942_1730	0.51	-0.6
1,802,353	+		Synpcc7942_1730	0.51	-0.3
1,802,353	-		Synpcc7942_1730	0.51	+0.2
1,802,353	-		Synpcc7942_1730	0.51	+2.8
1,802,363	-		Synpcc7942_1730	0.53	+5.2
1,802,374	+		Synpcc7942_1730	0.55	+0.7
1,802,391	+		Synpcc7942_1730	0.58	-1.1
1,802,391	+		Synpcc7942_1730	0.58	+2.9
1,802,391	+		Synpcc7942_1730	0.58	+3.8
1,802,393	-		Synpcc7942_1730	0.58	-2.0
1,802,399	-		Synpcc7942_1730	0.59	+1.0
1,802,400	-		Synpcc7942_1730	0.59	+1.3
1,802,400	-		Synpcc7942_1730	0.59	+1.5
1,802,400	-		Synpcc7942_1730	0.59	-1.2
1,802,400	-		Synpcc7942_1730	0.59	-1.0
1,802,453	+		Synpcc7942_1730	0.68	+1.8
1,802,456	-		Synpcc7942_1730	0.69	-1.8
1,802,478	+		Synpcc7942_1730	0.72	-0.3
1,802,478	+		Synpcc7942_1730	0.72	-2.2
1,802,486	-		Synpcc7942_1730	0.74	-3.2
1,802,486	-		Synpcc7942_1730	0.74	-0.0
1,802,499	+		Synpcc7942_1730	0.76	+1.2
1,802,504	+		Synpcc7942_1730	0.77	+4.0
1,802,511	+		Synpcc7942_1730	0.78	+0.5
1,802,558	-		Synpcc7942_1730	0.86	+0.6
1,802,624	+				-0.0
1,802,624	+				-0.6
1,802,624	+				+2.0
1,802,624	+				+0.3
1,802,632	-				-1.3
1,802,632	-				+1.0
1,802,632	-				+3.8
1,802,634	+				-2.9
1,802,635	+				-0.0
1,802,635	+				-0.0
1,802,635	+				-1.6
1,802,635	+				-2.6
1,802,640	+				+3.9
1,802,643	-				+1.5
1,802,643	-				+2.1
1,802,643	-				+5.0
1,802,645	+				+1.0
1,802,655	-				-1.8
1,802,665	-				-3.4
1,802,665	-				-2.0
1,802,675	-				+0.4
1,802,691	-				-2.2
1,802,720	-				-2.1
1,802,736	+		Synpcc7942_1731	0.10	+2.4
1,802,737	-		Synpcc7942_1731	0.10	+0.7
1,802,737	-		Synpcc7942_1731	0.10	+3.1
1,802,737	-		Synpcc7942_1731	0.10	+0.1
1,802,748	+		Synpcc7942_1731	0.13	-1.0
1,802,759	+		Synpcc7942_1731	0.15	+3.8
1,802,797	+		Synpcc7942_1731	0.23	-1.3
1,802,802	-		Synpcc7942_1731	0.24	-1.8
1,802,815	-		Synpcc7942_1731	0.27	+2.0
1,802,824	-		Synpcc7942_1731	0.28	+0.5
1,802,906	+		Synpcc7942_1731	0.45	-1.8
1,802,906	+		Synpcc7942_1731	0.45	+0.4
1,802,906	+		Synpcc7942_1731	0.45	-2.2
1,802,939	+		Synpcc7942_1731	0.52	-0.6
1,802,944	+		Synpcc7942_1731	0.53	+2.2
1,802,944	+		Synpcc7942_1731	0.53	+0.8
1,802,944	+		Synpcc7942_1731	0.53	-1.0
1,802,952	-		Synpcc7942_1731	0.55	-0.0
1,802,952	-		Synpcc7942_1731	0.55	-0.3
1,802,952	-		Synpcc7942_1731	0.55	-0.0
1,802,952	-		Synpcc7942_1731	0.55	-0.0
1,802,954	+		Synpcc7942_1731	0.55	+2.4
1,802,981	+		Synpcc7942_1731	0.61	+2.3
1,802,981	+		Synpcc7942_1731	0.61	+1.0
1,802,981	+		Synpcc7942_1731	0.61	-1.0
1,802,981	+		Synpcc7942_1731	0.61	+4.1