Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pntA and Synpcc7942_1613 are separated by 136 nucleotides Synpcc7942_1613 and rpmH are separated by 47 nucleotides rpmH and rnpA are separated by 5 nucleotides rnpA and Synpcc7942_1616 overlap by 14 nucleotides Synpcc7942_1616 and yidC are separated by 202 nucleotides
Synpcc7942_1612: pntA - pyridine nucleotide transhydrogenase alpha subunit, at 1,680,679 to 1,681,905
pntA
Synpcc7942_1613: Synpcc7942_1613 - hypothetical protein, at 1,682,042 to 1,682,617
_1613
Synpcc7942_1614: rpmH - 50S ribosomal protein L34, at 1,682,665 to 1,682,802
rpmH
Synpcc7942_1615: rnpA - ribonuclease P, at 1,682,808 to 1,683,176
rnpA
Synpcc7942_1616: Synpcc7942_1616 - hypothetical protein, at 1,683,163 to 1,683,549
_1616
Synpcc7942_1617: yidC - putative inner membrane protein translocase component YidC, at 1,683,752 to 1,684,930
yidC
Position (kb)
1682
1683
1684 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 1681.811 kb on - strand at 1681.816 kb on - strand at 1681.828 kb on - strand at 1681.873 kb on + strand at 1681.873 kb on + strand at 1681.881 kb on - strand at 1681.896 kb on - strand at 1681.911 kb on - strand at 1681.946 kb on + strand at 1681.987 kb on + strand at 1682.805 kb on - strand at 1683.190 kb on - strand at 1683.201 kb on + strand at 1683.209 kb on - strand, within Synpcc7942_1616 at 1683.258 kb on - strand, within Synpcc7942_1616 at 1683.263 kb on - strand, within Synpcc7942_1616 at 1683.573 kb on + strand at 1683.581 kb on - strand at 1683.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 1,681,811 - -1.2 1,681,816 - -1.2 1,681,828 - -1.9 1,681,873 + +1.5 1,681,873 + -1.7 1,681,881 - +2.3 1,681,896 - +0.1 1,681,911 - +4.0 1,681,946 + +2.5 1,681,987 + -1.7 1,682,805 - -1.5 1,683,190 - +7.5 1,683,201 + +4.0 1,683,209 - Synpcc7942_1616 0.12 +5.6 1,683,258 - Synpcc7942_1616 0.25 +3.5 1,683,263 - Synpcc7942_1616 0.26 +4.4 1,683,573 + -0.5 1,683,581 - -0.9 1,683,581 - +0.1
Or see this region's nucleotide sequence