Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1493

Experiment: A22 0.000341796875 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.000341796875 mg/ml
1,543,559	-	cmpD	Synpcc7942_1491	0.87	-1.0
1,543,561	+	cmpD	Synpcc7942_1491	0.87	-3.8
1,543,586	+	cmpD	Synpcc7942_1491	0.90	-1.5
1,543,594	-				-1.0
1,543,604	+				-1.5
1,543,604	+				-3.7
1,543,606	+				-2.4
1,543,606	+				-2.0
1,543,606	+				-3.6
1,543,606	+				+0.5
1,543,612	-				-2.1
1,543,614	-				-1.0
1,543,614	-				-4.4
1,543,667	-				-0.8
1,543,670	+				-0.8
1,543,682	+				-2.3
1,543,688	+				+2.6
1,543,791	+				-2.7
1,543,791	+				+1.7
1,543,792	-				+3.1
1,543,792	-				+0.0
1,543,799	-				-1.3
1,543,799	-				+1.5
1,543,814	+				+1.0
1,543,861	+				-1.0
1,543,869	-				-1.5
1,543,879	-				+2.0
1,543,917	+				-0.7
1,543,925	-				-1.3
1,544,035	-		Synpcc7942_1492	0.19	-1.3
1,544,067	-		Synpcc7942_1492	0.25	-0.7
1,544,072	+		Synpcc7942_1492	0.25	+0.0
1,544,120	-		Synpcc7942_1492	0.34	-0.8
1,544,132	+		Synpcc7942_1492	0.36	-1.9
1,544,140	-		Synpcc7942_1492	0.37	+1.5
1,544,140	-		Synpcc7942_1492	0.37	-1.0
1,544,150	-		Synpcc7942_1492	0.39	-1.0
1,544,163	-		Synpcc7942_1492	0.41	-1.4
1,544,211	+		Synpcc7942_1492	0.49	-4.5
1,544,211	+		Synpcc7942_1492	0.49	-1.3
1,544,211	+		Synpcc7942_1492	0.49	+0.0
1,544,211	+		Synpcc7942_1492	0.49	+0.0
1,544,269	+		Synpcc7942_1492	0.59	-1.0
1,544,279	+		Synpcc7942_1492	0.61	-2.0
1,544,295	+		Synpcc7942_1492	0.64	-0.5
1,544,295	+		Synpcc7942_1492	0.64	-0.4
1,544,298	-		Synpcc7942_1492	0.64	-2.1
1,544,303	-		Synpcc7942_1492	0.65	-1.8
1,544,310	-		Synpcc7942_1492	0.66	-1.5
1,544,329	+		Synpcc7942_1492	0.69	-0.3
1,544,335	+		Synpcc7942_1492	0.70	-2.0
1,544,338	-		Synpcc7942_1492	0.71	+0.0
1,544,340	+		Synpcc7942_1492	0.71	-1.5
1,544,340	+		Synpcc7942_1492	0.71	-0.5
1,544,340	+		Synpcc7942_1492	0.71	-0.5
1,544,347	+		Synpcc7942_1492	0.72	-1.5
1,544,348	-		Synpcc7942_1492	0.73	+0.5
1,544,348	-		Synpcc7942_1492	0.73	+1.0
1,544,348	-		Synpcc7942_1492	0.73	+0.7
1,544,373	+		Synpcc7942_1492	0.77	-1.1
1,544,391	-		Synpcc7942_1492	0.80	-1.7
1,544,405	-		Synpcc7942_1492	0.82	+1.0
1,544,433	+				+1.0
1,544,457	+				-1.5
1,544,465	-				-1.5
1,544,542	-				-2.3
1,544,583	-				+0.0
1,544,598	-	mazG	Synpcc7942_1493	0.10	+2.1
1,544,603	+	mazG	Synpcc7942_1493	0.11	-3.5
1,544,616	+	mazG	Synpcc7942_1493	0.12	-0.5
1,544,624	-	mazG	Synpcc7942_1493	0.13	+1.0
1,544,628	+	mazG	Synpcc7942_1493	0.14	-2.1
1,544,634	-	mazG	Synpcc7942_1493	0.14	-2.5
1,544,636	-	mazG	Synpcc7942_1493	0.15	-0.8
1,544,672	+	mazG	Synpcc7942_1493	0.19	-1.3
1,544,689	-	mazG	Synpcc7942_1493	0.21	+1.3
1,544,692	-	mazG	Synpcc7942_1493	0.21	-1.0
1,544,706	+	mazG	Synpcc7942_1493	0.23	-1.3
1,544,714	-	mazG	Synpcc7942_1493	0.24	-1.2
1,544,714	-	mazG	Synpcc7942_1493	0.24	-1.5
1,544,736	+	mazG	Synpcc7942_1493	0.26	-3.0
1,544,753	+	mazG	Synpcc7942_1493	0.28	+2.0
1,544,835	+	mazG	Synpcc7942_1493	0.38	+2.1
1,544,861	-	mazG	Synpcc7942_1493	0.41	-1.0
1,544,872	+	mazG	Synpcc7942_1493	0.43	-1.5
1,544,884	+	mazG	Synpcc7942_1493	0.44	-3.4
1,544,892	-	mazG	Synpcc7942_1493	0.45	-2.4
1,544,913	-	mazG	Synpcc7942_1493	0.47	-2.8
1,544,949	+	mazG	Synpcc7942_1493	0.52	-2.4
1,544,958	-	mazG	Synpcc7942_1493	0.53	+0.6
1,544,999	-				-0.5
1,545,003	+	mazG	Synpcc7942_1493	0.58	-0.1
1,545,005	+	mazG	Synpcc7942_1493	0.58	+1.3
1,545,006	-	mazG	Synpcc7942_1493	0.59	-2.5
1,545,036	+	mazG	Synpcc7942_1493	0.62	+0.1
1,545,040	-	mazG	Synpcc7942_1493	0.63	-1.5
1,545,063	+	mazG	Synpcc7942_1493	0.65	+0.9
1,545,071	-	mazG	Synpcc7942_1493	0.66	-1.0
1,545,084	+	mazG	Synpcc7942_1493	0.68	-0.8
1,545,092	-	mazG	Synpcc7942_1493	0.69	-1.5
1,545,092	-	mazG	Synpcc7942_1493	0.69	-2.7
1,545,105	+	mazG	Synpcc7942_1493	0.70	-1.8
1,545,105	+	mazG	Synpcc7942_1493	0.70	-1.3
1,545,113	-	mazG	Synpcc7942_1493	0.71	+2.0
1,545,131	+	mazG	Synpcc7942_1493	0.73	-0.2
1,545,139	-	mazG	Synpcc7942_1493	0.74	+1.2
1,545,139	-	mazG	Synpcc7942_1493	0.74	-2.5
1,545,143	+	mazG	Synpcc7942_1493	0.75	-2.7
1,545,144	-	mazG	Synpcc7942_1493	0.75	-1.5
1,545,167	+	mazG	Synpcc7942_1493	0.78	-2.4
1,545,175	-	mazG	Synpcc7942_1493	0.79	-0.5
1,545,203	-	mazG	Synpcc7942_1493	0.82	-1.3
1,545,207	+	mazG	Synpcc7942_1493	0.82	+2.1
1,545,207	+	mazG	Synpcc7942_1493	0.82	-4.4
1,545,209	-	mazG	Synpcc7942_1493	0.83	-2.8
1,545,210	+	mazG	Synpcc7942_1493	0.83	-2.9
1,545,215	-	mazG	Synpcc7942_1493	0.83	-1.5
1,545,223	-	mazG	Synpcc7942_1493	0.84	-2.4
1,545,270	-				+3.8
1,545,272	+				-2.0
1,545,282	+				-1.7
1,545,290	-				+3.0
1,545,331	+				+4.0
1,545,336	+				-1.8
1,545,348	+				+1.0
1,545,348	+				+0.0
1,545,348	+				-0.5
1,545,367	-				-1.8
1,545,380	+				+1.8
1,545,380	+				+3.0
1,545,395	-				-0.5
1,545,405	-				-1.5
1,545,565	-		Synpcc7942_1494	0.26	+1.0
1,546,101	+				+2.4
1,546,109	-				-1.0
1,546,109	-				+1.0
1,546,111	-				+2.4
1,546,111	-				+2.0
1,546,114	+				-1.8
1,546,119	+				+1.3
1,546,120	+				-2.9
1,546,127	-				+5.8
1,546,160	+				+2.5
1,546,168	-				+0.0
1,546,173	+				-1.5
1,546,173	+				-0.4
1,546,210	-		Synpcc7942_1495	0.16	-1.0
1,546,237	-		Synpcc7942_1495	0.22	+2.5
1,546,251	-		Synpcc7942_1495	0.24	-4.6
1,546,260	-		Synpcc7942_1495	0.26	+0.0
1,546,312	-		Synpcc7942_1495	0.36	-2.5
1,546,323	+		Synpcc7942_1495	0.38	+0.9
1,546,326	-		Synpcc7942_1495	0.38	+0.6
1,546,331	-		Synpcc7942_1495	0.39	+1.6
1,546,338	-		Synpcc7942_1495	0.41	-1.8