Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mntC and mntA are separated by 58 nucleotides mntA and mntB are separated by 6 nucleotides mntB and Synpcc7942_1319 are separated by 65 nucleotides
Synpcc7942_1316: mntC - Mn transporter MntC, at 1,346,077 to 1,347,114
mntC
Synpcc7942_1317: mntA - ATPase, at 1,347,173 to 1,347,910
mntA
Synpcc7942_1318: mntB - manganese transport system membrane protein MntB, at 1,347,917 to 1,348,768
mntB
Synpcc7942_1319: Synpcc7942_1319 - pyrimidine regulatory protein PyrR, at 1,348,834 to 1,349,373
_1319
Position (kb) 1347
1348 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1346.193 kb on + strand, within mntC at 1346.218 kb on + strand, within mntC at 1346.218 kb on + strand, within mntC at 1346.220 kb on + strand, within mntC at 1346.220 kb on + strand, within mntC at 1346.220 kb on + strand, within mntC at 1346.221 kb on - strand, within mntC at 1346.226 kb on - strand, within mntC at 1346.226 kb on - strand, within mntC at 1346.226 kb on - strand, within mntC at 1346.226 kb on - strand, within mntC at 1346.228 kb on - strand, within mntC at 1346.228 kb on - strand, within mntC at 1346.228 kb on - strand, within mntC at 1346.235 kb on + strand, within mntC at 1346.288 kb on + strand, within mntC at 1346.293 kb on + strand, within mntC at 1346.293 kb on + strand, within mntC at 1346.293 kb on + strand, within mntC at 1346.293 kb on + strand, within mntC at 1346.312 kb on + strand, within mntC at 1346.313 kb on - strand, within mntC at 1346.349 kb on + strand, within mntC at 1346.352 kb on + strand, within mntC at 1346.358 kb on - strand, within mntC at 1346.358 kb on - strand, within mntC at 1346.359 kb on + strand at 1346.391 kb on + strand, within mntC at 1346.537 kb on + strand, within mntC at 1346.545 kb on - strand, within mntC at 1346.545 kb on - strand, within mntC at 1346.545 kb on - strand, within mntC at 1346.560 kb on - strand, within mntC at 1346.568 kb on + strand at 1346.568 kb on + strand, within mntC at 1346.568 kb on + strand, within mntC at 1346.576 kb on - strand, within mntC at 1346.576 kb on - strand, within mntC at 1346.588 kb on - strand, within mntC at 1346.615 kb on + strand, within mntC at 1346.623 kb on - strand, within mntC at 1346.661 kb on + strand, within mntC at 1346.666 kb on + strand, within mntC at 1346.682 kb on + strand, within mntC at 1346.683 kb on + strand, within mntC at 1346.718 kb on + strand, within mntC at 1346.726 kb on - strand, within mntC at 1346.733 kb on - strand, within mntC at 1346.733 kb on - strand, within mntC at 1346.735 kb on + strand, within mntC at 1346.743 kb on - strand, within mntC at 1346.752 kb on + strand, within mntC at 1346.800 kb on + strand, within mntC at 1346.800 kb on + strand, within mntC at 1346.804 kb on - strand, within mntC at 1346.808 kb on - strand, within mntC at 1346.808 kb on - strand, within mntC at 1346.826 kb on + strand, within mntC at 1346.833 kb on + strand, within mntC at 1346.833 kb on + strand, within mntC at 1346.833 kb on + strand, within mntC at 1346.841 kb on - strand, within mntC at 1346.843 kb on + strand, within mntC at 1346.881 kb on + strand, within mntC at 1346.888 kb on + strand, within mntC at 1346.889 kb on + strand, within mntC at 1346.895 kb on + strand, within mntC at 1346.895 kb on + strand, within mntC at 1346.896 kb on + strand, within mntC at 1346.896 kb on - strand, within mntC at 1346.897 kb on - strand, within mntC at 1346.897 kb on - strand, within mntC at 1346.904 kb on - strand, within mntC at 1346.905 kb on - strand, within mntC at 1346.943 kb on - strand, within mntC at 1346.948 kb on - strand, within mntC at 1346.975 kb on + strand, within mntC at 1346.982 kb on + strand, within mntC at 1346.988 kb on - strand, within mntC at 1346.990 kb on + strand, within mntC at 1346.990 kb on + strand at 1346.998 kb on - strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.020 kb on - strand at 1347.020 kb on - strand at 1347.038 kb on + strand at 1347.044 kb on + strand at 1347.044 kb on - strand at 1347.062 kb on + strand at 1347.075 kb on - strand at 1347.075 kb on - strand at 1347.075 kb on - strand at 1347.080 kb on + strand at 1347.091 kb on + strand at 1347.103 kb on - strand at 1347.117 kb on + strand at 1347.125 kb on - strand at 1347.125 kb on - strand at 1347.125 kb on - strand at 1347.127 kb on + strand at 1347.190 kb on - strand at 1347.250 kb on - strand, within mntA at 1347.263 kb on + strand, within mntA at 1347.263 kb on + strand, within mntA at 1347.277 kb on + strand, within mntA at 1347.311 kb on + strand, within mntA at 1347.311 kb on + strand, within mntA at 1347.319 kb on - strand, within mntA at 1347.319 kb on - strand, within mntA at 1347.322 kb on + strand, within mntA at 1347.344 kb on + strand, within mntA at 1347.354 kb on - strand, within mntA at 1347.379 kb on + strand, within mntA at 1347.379 kb on + strand, within mntA at 1347.398 kb on - strand, within mntA at 1347.424 kb on - strand, within mntA at 1347.571 kb on + strand, within mntA at 1347.579 kb on - strand, within mntA at 1347.654 kb on - strand, within mntA at 1347.748 kb on + strand, within mntA at 1347.758 kb on + strand, within mntA at 1347.768 kb on + strand, within mntA at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.860 kb on - strand at 1347.860 kb on - strand at 1347.860 kb on - strand at 1347.876 kb on - strand at 1347.882 kb on - strand at 1347.926 kb on - strand at 1347.949 kb on - strand at 1347.974 kb on - strand at 1348.055 kb on + strand, within mntB at 1348.070 kb on - strand, within mntB at 1348.112 kb on - strand, within mntB at 1348.118 kb on - strand, within mntB at 1348.154 kb on - strand, within mntB at 1348.177 kb on + strand, within mntB at 1348.188 kb on + strand, within mntB at 1348.251 kb on - strand, within mntB at 1348.340 kb on - strand, within mntB at 1348.352 kb on - strand, within mntB at 1348.368 kb on - strand, within mntB at 1348.390 kb on + strand, within mntB at 1348.398 kb on - strand, within mntB at 1348.413 kb on + strand, within mntB at 1348.433 kb on + strand, within mntB at 1348.448 kb on + strand, within mntB at 1348.471 kb on - strand, within mntB at 1348.518 kb on + strand, within mntB at 1348.548 kb on - strand, within mntB at 1348.549 kb on + strand, within mntB at 1348.554 kb on + strand, within mntB at 1348.554 kb on + strand, within mntB at 1348.568 kb on + strand, within mntB at 1348.573 kb on + strand, within mntB at 1348.581 kb on - strand, within mntB at 1348.586 kb on + strand, within mntB at 1348.601 kb on - strand, within mntB at 1348.617 kb on - strand, within mntB at 1348.620 kb on + strand, within mntB at 1348.644 kb on + strand, within mntB at 1348.652 kb on - strand, within mntB at 1348.673 kb on + strand, within mntB at 1348.678 kb on + strand, within mntB at 1348.738 kb on - strand at 1348.741 kb on + strand at 1348.764 kb on + strand at 1348.780 kb on - strand at 1348.794 kb on + strand at 1348.796 kb on - strand at 1348.840 kb on - strand at 1348.890 kb on - strand, within Synpcc7942_1319
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 1,346,193 + mntC Synpcc7942_1316 0.11 -2.3 1,346,218 + mntC Synpcc7942_1316 0.14 -2.2 1,346,218 + mntC Synpcc7942_1316 0.14 -1.0 1,346,220 + mntC Synpcc7942_1316 0.14 -2.6 1,346,220 + mntC Synpcc7942_1316 0.14 -0.4 1,346,220 + mntC Synpcc7942_1316 0.14 -0.9 1,346,221 - mntC Synpcc7942_1316 0.14 +1.1 1,346,226 - mntC Synpcc7942_1316 0.14 -0.9 1,346,226 - mntC Synpcc7942_1316 0.14 +0.1 1,346,226 - mntC Synpcc7942_1316 0.14 +0.1 1,346,226 - mntC Synpcc7942_1316 0.14 +0.1 1,346,228 - mntC Synpcc7942_1316 0.15 +1.4 1,346,228 - mntC Synpcc7942_1316 0.15 +1.1 1,346,228 - mntC Synpcc7942_1316 0.15 -2.0 1,346,235 + mntC Synpcc7942_1316 0.15 -0.7 1,346,288 + mntC Synpcc7942_1316 0.20 -2.0 1,346,293 + mntC Synpcc7942_1316 0.21 -0.6 1,346,293 + mntC Synpcc7942_1316 0.21 -2.2 1,346,293 + mntC Synpcc7942_1316 0.21 -0.9 1,346,293 + mntC Synpcc7942_1316 0.21 -0.4 1,346,312 + mntC Synpcc7942_1316 0.23 -1.7 1,346,313 - mntC Synpcc7942_1316 0.23 -0.4 1,346,349 + mntC Synpcc7942_1316 0.26 +0.7 1,346,352 + mntC Synpcc7942_1316 0.26 +0.3 1,346,358 - mntC Synpcc7942_1316 0.27 -0.4 1,346,358 - mntC Synpcc7942_1316 0.27 -0.9 1,346,359 + +1.1 1,346,391 + mntC Synpcc7942_1316 0.30 -1.2 1,346,537 + mntC Synpcc7942_1316 0.44 -1.7 1,346,545 - mntC Synpcc7942_1316 0.45 -0.9 1,346,545 - mntC Synpcc7942_1316 0.45 -0.4 1,346,545 - mntC Synpcc7942_1316 0.45 +2.6 1,346,560 - mntC Synpcc7942_1316 0.47 -3.3 1,346,568 + +1.1 1,346,568 + mntC Synpcc7942_1316 0.47 +0.1 1,346,568 + mntC Synpcc7942_1316 0.47 -1.7 1,346,576 - mntC Synpcc7942_1316 0.48 +0.1 1,346,576 - mntC Synpcc7942_1316 0.48 -0.9 1,346,588 - mntC Synpcc7942_1316 0.49 -1.0 1,346,615 + mntC Synpcc7942_1316 0.52 +1.1 1,346,623 - mntC Synpcc7942_1316 0.53 -3.0 1,346,661 + mntC Synpcc7942_1316 0.56 -0.9 1,346,666 + mntC Synpcc7942_1316 0.57 -0.9 1,346,682 + mntC Synpcc7942_1316 0.58 +0.1 1,346,683 + mntC Synpcc7942_1316 0.58 -0.4 1,346,718 + mntC Synpcc7942_1316 0.62 -0.4 1,346,726 - mntC Synpcc7942_1316 0.63 +1.1 1,346,733 - mntC Synpcc7942_1316 0.63 -1.0 1,346,733 - mntC Synpcc7942_1316 0.63 -1.7 1,346,735 + mntC Synpcc7942_1316 0.63 -2.4 1,346,743 - mntC Synpcc7942_1316 0.64 -1.4 1,346,752 + mntC Synpcc7942_1316 0.65 -1.4 1,346,800 + mntC Synpcc7942_1316 0.70 -0.4 1,346,800 + mntC Synpcc7942_1316 0.70 +1.6 1,346,804 - mntC Synpcc7942_1316 0.70 +0.7 1,346,808 - mntC Synpcc7942_1316 0.70 -2.1 1,346,808 - mntC Synpcc7942_1316 0.70 +1.7 1,346,826 + mntC Synpcc7942_1316 0.72 +1.1 1,346,833 + mntC Synpcc7942_1316 0.73 -1.2 1,346,833 + mntC Synpcc7942_1316 0.73 -1.7 1,346,833 + mntC Synpcc7942_1316 0.73 -2.0 1,346,841 - mntC Synpcc7942_1316 0.74 -2.0 1,346,843 + mntC Synpcc7942_1316 0.74 -0.4 1,346,881 + mntC Synpcc7942_1316 0.77 -0.2 1,346,888 + mntC Synpcc7942_1316 0.78 -0.4 1,346,889 + mntC Synpcc7942_1316 0.78 -1.7 1,346,895 + mntC Synpcc7942_1316 0.79 -2.6 1,346,895 + mntC Synpcc7942_1316 0.79 -1.6 1,346,896 + mntC Synpcc7942_1316 0.79 -0.9 1,346,896 - mntC Synpcc7942_1316 0.79 -0.9 1,346,897 - mntC Synpcc7942_1316 0.79 -1.2 1,346,897 - mntC Synpcc7942_1316 0.79 -0.9 1,346,904 - mntC Synpcc7942_1316 0.80 -1.4 1,346,905 - mntC Synpcc7942_1316 0.80 -2.0 1,346,943 - mntC Synpcc7942_1316 0.83 -1.4 1,346,948 - mntC Synpcc7942_1316 0.84 -1.4 1,346,975 + mntC Synpcc7942_1316 0.87 -0.9 1,346,982 + mntC Synpcc7942_1316 0.87 -1.0 1,346,988 - mntC Synpcc7942_1316 0.88 +0.1 1,346,990 + mntC Synpcc7942_1316 0.88 -2.8 1,346,990 + +1.1 1,346,998 - mntC Synpcc7942_1316 0.89 +0.1 1,347,002 + mntC Synpcc7942_1316 0.89 +0.1 1,347,002 + mntC Synpcc7942_1316 0.89 -0.9 1,347,002 + mntC Synpcc7942_1316 0.89 +0.3 1,347,002 + mntC Synpcc7942_1316 0.89 +3.5 1,347,010 - mntC Synpcc7942_1316 0.90 +1.1 1,347,010 - mntC Synpcc7942_1316 0.90 -1.4 1,347,010 - mntC Synpcc7942_1316 0.90 -1.2 1,347,010 - +0.1 1,347,010 - mntC Synpcc7942_1316 0.90 -1.6 1,347,010 - mntC Synpcc7942_1316 0.90 +1.1 1,347,020 - -1.2 1,347,020 - -1.6 1,347,038 + -1.9 1,347,044 + -2.0 1,347,044 - -0.9 1,347,062 + -0.7 1,347,075 - -0.4 1,347,075 - -2.3 1,347,075 - +0.4 1,347,080 + +0.1 1,347,091 + +0.1 1,347,103 - +1.5 1,347,117 + -3.3 1,347,125 - +0.1 1,347,125 - -0.2 1,347,125 - +3.9 1,347,127 + +1.1 1,347,190 - -2.7 1,347,250 - mntA Synpcc7942_1317 0.10 -0.4 1,347,263 + mntA Synpcc7942_1317 0.12 -2.6 1,347,263 + mntA Synpcc7942_1317 0.12 +0.5 1,347,277 + mntA Synpcc7942_1317 0.14 +0.3 1,347,311 + mntA Synpcc7942_1317 0.19 -1.9 1,347,311 + mntA Synpcc7942_1317 0.19 +0.2 1,347,319 - mntA Synpcc7942_1317 0.20 -0.7 1,347,319 - mntA Synpcc7942_1317 0.20 -3.4 1,347,322 + mntA Synpcc7942_1317 0.20 -1.2 1,347,344 + mntA Synpcc7942_1317 0.23 -0.9 1,347,354 - mntA Synpcc7942_1317 0.25 -0.9 1,347,379 + mntA Synpcc7942_1317 0.28 -1.9 1,347,379 + mntA Synpcc7942_1317 0.28 -2.0 1,347,398 - mntA Synpcc7942_1317 0.30 -1.1 1,347,424 - mntA Synpcc7942_1317 0.34 -0.4 1,347,571 + mntA Synpcc7942_1317 0.54 +0.3 1,347,579 - mntA Synpcc7942_1317 0.55 -2.6 1,347,654 - mntA Synpcc7942_1317 0.65 +0.0 1,347,748 + mntA Synpcc7942_1317 0.78 -1.0 1,347,758 + mntA Synpcc7942_1317 0.79 +0.1 1,347,768 + mntA Synpcc7942_1317 0.81 -1.7 1,347,852 + +2.0 1,347,852 + +1.1 1,347,852 + +0.7 1,347,852 + -1.5 1,347,852 + -2.0 1,347,860 - +5.6 1,347,860 - -0.4 1,347,860 - +4.1 1,347,876 - +0.7 1,347,882 - -1.9 1,347,926 - +0.1 1,347,949 - -1.2 1,347,974 - +1.1 1,348,055 + mntB Synpcc7942_1318 0.16 -1.3 1,348,070 - mntB Synpcc7942_1318 0.18 +0.3 1,348,112 - mntB Synpcc7942_1318 0.23 -1.7 1,348,118 - mntB Synpcc7942_1318 0.24 +0.3 1,348,154 - mntB Synpcc7942_1318 0.28 -1.4 1,348,177 + mntB Synpcc7942_1318 0.31 -4.0 1,348,188 + mntB Synpcc7942_1318 0.32 +1.1 1,348,251 - mntB Synpcc7942_1318 0.39 +1.1 1,348,340 - mntB Synpcc7942_1318 0.50 +0.3 1,348,352 - mntB Synpcc7942_1318 0.51 -1.2 1,348,368 - mntB Synpcc7942_1318 0.53 +0.1 1,348,390 + mntB Synpcc7942_1318 0.56 -0.2 1,348,398 - mntB Synpcc7942_1318 0.56 -1.4 1,348,413 + mntB Synpcc7942_1318 0.58 -0.9 1,348,433 + mntB Synpcc7942_1318 0.61 -0.9 1,348,448 + mntB Synpcc7942_1318 0.62 -0.3 1,348,471 - mntB Synpcc7942_1318 0.65 -2.2 1,348,518 + mntB Synpcc7942_1318 0.71 -1.8 1,348,548 - mntB Synpcc7942_1318 0.74 +0.1 1,348,549 + mntB Synpcc7942_1318 0.74 -1.1 1,348,554 + mntB Synpcc7942_1318 0.75 +0.1 1,348,554 + mntB Synpcc7942_1318 0.75 +0.1 1,348,568 + mntB Synpcc7942_1318 0.76 +0.6 1,348,573 + mntB Synpcc7942_1318 0.77 +1.1 1,348,581 - mntB Synpcc7942_1318 0.78 -0.4 1,348,586 + mntB Synpcc7942_1318 0.79 -0.9 1,348,601 - mntB Synpcc7942_1318 0.80 -1.2 1,348,617 - mntB Synpcc7942_1318 0.82 -1.2 1,348,620 + mntB Synpcc7942_1318 0.83 +0.1 1,348,644 + mntB Synpcc7942_1318 0.85 +0.1 1,348,652 - mntB Synpcc7942_1318 0.86 -0.2 1,348,673 + mntB Synpcc7942_1318 0.89 -1.7 1,348,678 + mntB Synpcc7942_1318 0.89 -1.9 1,348,738 - -2.7 1,348,741 + -0.4 1,348,764 + -0.6 1,348,780 - +0.1 1,348,794 + +2.1 1,348,796 - +2.1 1,348,840 - -1.9 1,348,890 - Synpcc7942_1319 0.10 +2.4
Or see this region's nucleotide sequence