Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1299 and Synpcc7942_1300 are separated by 238 nucleotides Synpcc7942_1300 and recQ are separated by 15 nucleotides recQ and Synpcc7942_1302 are separated by 108 nucleotides Synpcc7942_1302 and Synpcc7942_1303 are separated by 25 nucleotides
Synpcc7942_1299: Synpcc7942_1299 - hypothetical protein, at 1,326,892 to 1,327,854
_1299
Synpcc7942_1300: Synpcc7942_1300 - hypothetical protein, at 1,328,093 to 1,328,662
_1300
Synpcc7942_1301: recQ - ATP-dependent DNA helicase RecQ, at 1,328,678 to 1,330,141
recQ
Synpcc7942_1302: Synpcc7942_1302 - hypothetical protein, at 1,330,250 to 1,330,726
_1302
Synpcc7942_1303: Synpcc7942_1303 - hypothetical protein, at 1,330,752 to 1,331,150
_1303
Position (kb) 1328
1329
1330
1331 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 1327.682 kb on - strand, within Synpcc7942_1299 at 1327.684 kb on + strand, within Synpcc7942_1299 at 1327.692 kb on - strand, within Synpcc7942_1299 at 1327.826 kb on + strand at 1327.834 kb on - strand at 1327.834 kb on - strand at 1327.842 kb on - strand at 1327.844 kb on + strand at 1328.006 kb on + strand at 1328.006 kb on + strand at 1328.014 kb on - strand at 1328.016 kb on + strand at 1328.086 kb on + strand at 1328.094 kb on - strand at 1328.102 kb on + strand at 1328.224 kb on + strand, within Synpcc7942_1300 at 1328.232 kb on - strand, within Synpcc7942_1300 at 1328.265 kb on + strand, within Synpcc7942_1300 at 1328.310 kb on + strand, within Synpcc7942_1300 at 1328.346 kb on - strand, within Synpcc7942_1300 at 1328.413 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.423 kb on - strand, within Synpcc7942_1300 at 1328.478 kb on - strand, within Synpcc7942_1300 at 1328.518 kb on + strand, within Synpcc7942_1300 at 1328.563 kb on + strand, within Synpcc7942_1300 at 1328.563 kb on + strand, within Synpcc7942_1300 at 1328.563 kb on + strand, within Synpcc7942_1300 at 1328.571 kb on - strand, within Synpcc7942_1300 at 1328.571 kb on - strand, within Synpcc7942_1300 at 1328.581 kb on - strand, within Synpcc7942_1300 at 1328.588 kb on + strand, within Synpcc7942_1300 at 1328.626 kb on + strand at 1328.651 kb on - strand at 1328.671 kb on - strand at 1328.671 kb on - strand at 1328.673 kb on + strand at 1328.678 kb on - strand at 1328.683 kb on - strand at 1328.683 kb on - strand at 1328.693 kb on + strand at 1328.699 kb on - strand at 1328.731 kb on - strand at 1328.745 kb on + strand at 1328.764 kb on + strand at 1328.764 kb on + strand at 1328.764 kb on + strand at 1328.765 kb on + strand at 1328.772 kb on - strand at 1328.772 kb on - strand at 1328.781 kb on + strand at 1328.792 kb on + strand at 1328.797 kb on + strand at 1328.804 kb on + strand at 1328.805 kb on - strand at 1328.825 kb on + strand, within recQ at 1328.827 kb on - strand at 1328.874 kb on + strand, within recQ at 1328.874 kb on + strand, within recQ at 1328.882 kb on - strand, within recQ at 1328.882 kb on - strand, within recQ at 1328.896 kb on - strand, within recQ at 1328.903 kb on + strand, within recQ at 1328.911 kb on - strand, within recQ at 1328.965 kb on - strand, within recQ at 1329.008 kb on - strand, within recQ at 1329.029 kb on + strand, within recQ at 1329.055 kb on + strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.068 kb on + strand, within recQ at 1329.074 kb on + strand, within recQ at 1329.101 kb on + strand, within recQ at 1329.148 kb on + strand, within recQ at 1329.149 kb on + strand, within recQ at 1329.158 kb on + strand, within recQ at 1329.158 kb on + strand, within recQ at 1329.161 kb on + strand, within recQ at 1329.166 kb on - strand, within recQ at 1329.218 kb on + strand, within recQ at 1329.218 kb on + strand, within recQ at 1329.218 kb on + strand, within recQ at 1329.226 kb on - strand, within recQ at 1329.240 kb on - strand, within recQ at 1329.264 kb on - strand, within recQ at 1329.285 kb on - strand, within recQ at 1329.294 kb on - strand, within recQ at 1329.308 kb on - strand, within recQ at 1329.352 kb on - strand, within recQ at 1329.360 kb on - strand, within recQ at 1329.386 kb on - strand at 1329.390 kb on - strand, within recQ at 1329.399 kb on + strand, within recQ at 1329.406 kb on - strand, within recQ at 1329.418 kb on - strand, within recQ at 1329.445 kb on - strand, within recQ at 1329.445 kb on - strand, within recQ at 1329.446 kb on + strand, within recQ at 1329.446 kb on + strand, within recQ at 1329.454 kb on - strand, within recQ at 1329.481 kb on + strand, within recQ at 1329.481 kb on + strand, within recQ at 1329.481 kb on + strand, within recQ at 1329.482 kb on - strand, within recQ at 1329.545 kb on - strand, within recQ at 1329.587 kb on + strand, within recQ at 1329.602 kb on + strand at 1329.602 kb on + strand, within recQ at 1329.602 kb on - strand, within recQ at 1329.604 kb on + strand, within recQ at 1329.604 kb on + strand, within recQ at 1329.612 kb on - strand, within recQ at 1329.612 kb on - strand, within recQ at 1329.612 kb on - strand, within recQ at 1329.614 kb on + strand, within recQ at 1329.632 kb on + strand, within recQ at 1329.634 kb on - strand, within recQ at 1329.651 kb on + strand, within recQ at 1329.667 kb on - strand, within recQ at 1329.670 kb on - strand, within recQ at 1329.679 kb on - strand, within recQ at 1329.679 kb on - strand, within recQ at 1329.684 kb on + strand, within recQ at 1329.737 kb on + strand, within recQ at 1329.737 kb on + strand, within recQ at 1329.743 kb on + strand, within recQ at 1329.745 kb on - strand, within recQ at 1329.757 kb on + strand, within recQ at 1329.765 kb on - strand, within recQ at 1329.768 kb on + strand, within recQ at 1329.776 kb on - strand, within recQ at 1329.801 kb on + strand, within recQ at 1329.844 kb on - strand at 1329.889 kb on - strand, within recQ at 1329.904 kb on + strand, within recQ at 1329.904 kb on + strand, within recQ at 1329.912 kb on - strand, within recQ at 1329.930 kb on + strand, within recQ at 1329.938 kb on - strand, within recQ at 1329.956 kb on - strand, within recQ at 1329.993 kb on + strand, within recQ at 1330.013 kb on - strand at 1330.098 kb on - strand at 1330.098 kb on - strand at 1330.098 kb on - strand at 1330.104 kb on + strand at 1330.112 kb on - strand at 1330.112 kb on - strand at 1330.136 kb on + strand at 1330.145 kb on + strand at 1330.159 kb on + strand at 1330.159 kb on + strand at 1330.159 kb on + strand at 1330.164 kb on + strand at 1330.167 kb on - strand at 1330.169 kb on - strand at 1330.180 kb on + strand at 1330.211 kb on - strand at 1330.222 kb on - strand at 1330.283 kb on - strand at 1330.382 kb on + strand, within Synpcc7942_1302 at 1330.431 kb on - strand, within Synpcc7942_1302 at 1330.441 kb on - strand, within Synpcc7942_1302 at 1330.449 kb on - strand, within Synpcc7942_1302 at 1330.470 kb on + strand, within Synpcc7942_1302 at 1330.475 kb on + strand, within Synpcc7942_1302 at 1330.478 kb on - strand, within Synpcc7942_1302 at 1330.483 kb on - strand, within Synpcc7942_1302 at 1330.523 kb on + strand, within Synpcc7942_1302 at 1330.543 kb on - strand, within Synpcc7942_1302 at 1330.687 kb on + strand at 1330.703 kb on - strand at 1330.703 kb on - strand at 1330.713 kb on + strand at 1330.744 kb on + strand at 1330.752 kb on - strand at 1330.752 kb on - strand at 1330.754 kb on + strand at 1330.762 kb on + strand at 1330.764 kb on + strand at 1330.764 kb on + strand at 1330.764 kb on + strand at 1330.772 kb on - strand at 1330.774 kb on + strand at 1330.774 kb on + strand at 1330.780 kb on - strand at 1330.812 kb on - strand, within Synpcc7942_1303 at 1330.828 kb on + strand, within Synpcc7942_1303 at 1330.833 kb on + strand, within Synpcc7942_1303 at 1330.836 kb on - strand, within Synpcc7942_1303 at 1330.842 kb on + strand, within Synpcc7942_1303 at 1330.860 kb on - strand, within Synpcc7942_1303 at 1330.872 kb on - strand, within Synpcc7942_1303 at 1330.878 kb on - strand at 1330.878 kb on - strand, within Synpcc7942_1303 at 1330.950 kb on - strand, within Synpcc7942_1303 at 1330.996 kb on - strand, within Synpcc7942_1303 at 1331.065 kb on + strand, within Synpcc7942_1303 at 1331.065 kb on + strand, within Synpcc7942_1303 at 1331.075 kb on + strand, within Synpcc7942_1303 at 1331.097 kb on + strand, within Synpcc7942_1303 at 1331.105 kb on - strand, within Synpcc7942_1303 at 1331.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 1,327,682 - Synpcc7942_1299 0.82 -0.9 1,327,684 + Synpcc7942_1299 0.82 -0.5 1,327,692 - Synpcc7942_1299 0.83 +1.1 1,327,826 + -0.5 1,327,834 - -0.5 1,327,834 - -0.9 1,327,842 - +1.1 1,327,844 + -1.4 1,328,006 + +0.0 1,328,006 + -2.4 1,328,014 - +0.5 1,328,016 + +0.0 1,328,086 + -1.9 1,328,094 - +0.0 1,328,102 + +0.3 1,328,224 + Synpcc7942_1300 0.23 +4.3 1,328,232 - Synpcc7942_1300 0.24 -0.5 1,328,265 + Synpcc7942_1300 0.30 +0.8 1,328,310 + Synpcc7942_1300 0.38 +3.3 1,328,346 - Synpcc7942_1300 0.44 +4.0 1,328,413 + Synpcc7942_1300 0.56 +3.8 1,328,415 + Synpcc7942_1300 0.56 +2.0 1,328,415 + Synpcc7942_1300 0.56 +3.0 1,328,415 + Synpcc7942_1300 0.56 +2.9 1,328,415 + Synpcc7942_1300 0.56 -0.3 1,328,423 - Synpcc7942_1300 0.58 +2.1 1,328,478 - Synpcc7942_1300 0.68 +1.6 1,328,518 + Synpcc7942_1300 0.75 +3.8 1,328,563 + Synpcc7942_1300 0.82 +1.6 1,328,563 + Synpcc7942_1300 0.82 +3.6 1,328,563 + Synpcc7942_1300 0.82 -1.0 1,328,571 - Synpcc7942_1300 0.84 +3.9 1,328,571 - Synpcc7942_1300 0.84 +1.4 1,328,581 - Synpcc7942_1300 0.86 +3.3 1,328,588 + Synpcc7942_1300 0.87 +0.8 1,328,626 + +2.5 1,328,651 - +0.4 1,328,671 - +1.9 1,328,671 - +2.9 1,328,673 + -1.5 1,328,678 - -0.3 1,328,683 - +1.6 1,328,683 - -2.1 1,328,693 + +0.0 1,328,699 - -4.0 1,328,731 - -1.1 1,328,745 + -0.5 1,328,764 + -0.5 1,328,764 + +1.0 1,328,764 + -0.5 1,328,765 + -0.5 1,328,772 - -2.7 1,328,772 - -0.7 1,328,781 + -4.0 1,328,792 + -2.5 1,328,797 + -2.4 1,328,804 + -1.3 1,328,805 - +2.6 1,328,825 + recQ Synpcc7942_1301 0.10 -2.0 1,328,827 - +0.0 1,328,874 + recQ Synpcc7942_1301 0.13 +1.8 1,328,874 + recQ Synpcc7942_1301 0.13 -2.3 1,328,882 - recQ Synpcc7942_1301 0.14 +2.6 1,328,882 - recQ Synpcc7942_1301 0.14 -2.0 1,328,896 - recQ Synpcc7942_1301 0.15 +0.1 1,328,903 + recQ Synpcc7942_1301 0.15 -3.2 1,328,911 - recQ Synpcc7942_1301 0.16 -1.5 1,328,965 - recQ Synpcc7942_1301 0.20 -0.5 1,329,008 - recQ Synpcc7942_1301 0.23 +2.6 1,329,029 + recQ Synpcc7942_1301 0.24 +0.1 1,329,055 + recQ Synpcc7942_1301 0.26 +1.8 1,329,063 - recQ Synpcc7942_1301 0.26 +3.1 1,329,063 - recQ Synpcc7942_1301 0.26 +0.5 1,329,063 - recQ Synpcc7942_1301 0.26 -0.5 1,329,063 - recQ Synpcc7942_1301 0.26 -3.4 1,329,068 + recQ Synpcc7942_1301 0.27 -0.5 1,329,074 + recQ Synpcc7942_1301 0.27 -2.3 1,329,101 + recQ Synpcc7942_1301 0.29 -1.9 1,329,148 + recQ Synpcc7942_1301 0.32 -1.3 1,329,149 + recQ Synpcc7942_1301 0.32 -0.2 1,329,158 + recQ Synpcc7942_1301 0.33 +0.8 1,329,158 + recQ Synpcc7942_1301 0.33 +0.3 1,329,161 + recQ Synpcc7942_1301 0.33 +0.1 1,329,166 - recQ Synpcc7942_1301 0.33 -1.5 1,329,218 + recQ Synpcc7942_1301 0.37 -1.5 1,329,218 + recQ Synpcc7942_1301 0.37 -2.1 1,329,218 + recQ Synpcc7942_1301 0.37 +3.0 1,329,226 - recQ Synpcc7942_1301 0.37 +1.5 1,329,240 - recQ Synpcc7942_1301 0.38 +1.2 1,329,264 - recQ Synpcc7942_1301 0.40 +0.9 1,329,285 - recQ Synpcc7942_1301 0.41 +0.4 1,329,294 - recQ Synpcc7942_1301 0.42 -1.8 1,329,308 - recQ Synpcc7942_1301 0.43 -0.5 1,329,352 - recQ Synpcc7942_1301 0.46 +1.6 1,329,360 - recQ Synpcc7942_1301 0.47 +1.2 1,329,386 - -0.9 1,329,390 - recQ Synpcc7942_1301 0.49 +0.1 1,329,399 + recQ Synpcc7942_1301 0.49 +4.3 1,329,406 - recQ Synpcc7942_1301 0.50 +1.1 1,329,418 - recQ Synpcc7942_1301 0.51 +2.0 1,329,445 - recQ Synpcc7942_1301 0.52 +1.8 1,329,445 - recQ Synpcc7942_1301 0.52 -0.4 1,329,446 + recQ Synpcc7942_1301 0.52 -1.3 1,329,446 + recQ Synpcc7942_1301 0.52 -0.8 1,329,454 - recQ Synpcc7942_1301 0.53 +2.4 1,329,481 + recQ Synpcc7942_1301 0.55 -1.8 1,329,481 + recQ Synpcc7942_1301 0.55 -0.5 1,329,481 + recQ Synpcc7942_1301 0.55 -1.8 1,329,482 - recQ Synpcc7942_1301 0.55 -0.8 1,329,545 - recQ Synpcc7942_1301 0.59 -1.1 1,329,587 + recQ Synpcc7942_1301 0.62 -1.3 1,329,602 + +1.1 1,329,602 + recQ Synpcc7942_1301 0.63 -2.3 1,329,602 - recQ Synpcc7942_1301 0.63 +2.2 1,329,604 + recQ Synpcc7942_1301 0.63 +1.4 1,329,604 + recQ Synpcc7942_1301 0.63 +2.6 1,329,612 - recQ Synpcc7942_1301 0.64 -1.9 1,329,612 - recQ Synpcc7942_1301 0.64 +1.3 1,329,612 - recQ Synpcc7942_1301 0.64 +1.6 1,329,614 + recQ Synpcc7942_1301 0.64 +2.3 1,329,632 + recQ Synpcc7942_1301 0.65 -0.3 1,329,634 - recQ Synpcc7942_1301 0.65 +0.5 1,329,651 + recQ Synpcc7942_1301 0.66 -1.5 1,329,667 - recQ Synpcc7942_1301 0.68 +1.5 1,329,670 - recQ Synpcc7942_1301 0.68 +2.7 1,329,679 - recQ Synpcc7942_1301 0.68 +2.0 1,329,679 - recQ Synpcc7942_1301 0.68 +1.1 1,329,684 + recQ Synpcc7942_1301 0.69 -0.6 1,329,737 + recQ Synpcc7942_1301 0.72 +0.1 1,329,737 + recQ Synpcc7942_1301 0.72 -1.5 1,329,743 + recQ Synpcc7942_1301 0.73 -0.9 1,329,745 - recQ Synpcc7942_1301 0.73 -0.5 1,329,757 + recQ Synpcc7942_1301 0.74 -0.5 1,329,765 - recQ Synpcc7942_1301 0.74 -0.5 1,329,768 + recQ Synpcc7942_1301 0.74 +2.6 1,329,776 - recQ Synpcc7942_1301 0.75 -1.0 1,329,801 + recQ Synpcc7942_1301 0.77 -2.1 1,329,844 - +0.1 1,329,889 - recQ Synpcc7942_1301 0.83 +2.1 1,329,904 + recQ Synpcc7942_1301 0.84 +0.1 1,329,904 + recQ Synpcc7942_1301 0.84 +0.8 1,329,912 - recQ Synpcc7942_1301 0.84 +0.1 1,329,930 + recQ Synpcc7942_1301 0.86 +3.0 1,329,938 - recQ Synpcc7942_1301 0.86 +2.0 1,329,956 - recQ Synpcc7942_1301 0.87 -2.1 1,329,993 + recQ Synpcc7942_1301 0.90 -2.6 1,330,013 - +1.1 1,330,098 - +1.1 1,330,098 - +2.9 1,330,098 - +3.3 1,330,104 + +0.1 1,330,112 - -2.3 1,330,112 - -0.3 1,330,136 + -1.5 1,330,145 + +1.1 1,330,159 + -1.5 1,330,159 + -0.5 1,330,159 + -1.8 1,330,164 + -0.9 1,330,167 - +1.1 1,330,169 - -1.3 1,330,180 + -2.0 1,330,211 - -1.5 1,330,222 - +3.5 1,330,283 - +1.1 1,330,382 + Synpcc7942_1302 0.28 -1.4 1,330,431 - Synpcc7942_1302 0.38 -1.3 1,330,441 - Synpcc7942_1302 0.40 -1.0 1,330,449 - Synpcc7942_1302 0.42 +2.0 1,330,470 + Synpcc7942_1302 0.46 -2.3 1,330,475 + Synpcc7942_1302 0.47 -2.1 1,330,478 - Synpcc7942_1302 0.48 +0.1 1,330,483 - Synpcc7942_1302 0.49 +0.5 1,330,523 + Synpcc7942_1302 0.57 +3.9 1,330,543 - Synpcc7942_1302 0.61 -2.5 1,330,687 + +2.9 1,330,703 - +1.1 1,330,703 - +2.8 1,330,713 + -0.5 1,330,744 + +1.7 1,330,752 - +2.4 1,330,752 - +1.1 1,330,754 + +0.1 1,330,762 + +3.8 1,330,764 + -0.9 1,330,764 + +0.3 1,330,764 + +1.1 1,330,772 - +2.8 1,330,774 + +0.1 1,330,774 + +0.1 1,330,780 - -1.5 1,330,812 - Synpcc7942_1303 0.15 -3.3 1,330,828 + Synpcc7942_1303 0.19 -1.3 1,330,833 + Synpcc7942_1303 0.20 +5.8 1,330,836 - Synpcc7942_1303 0.21 -1.9 1,330,842 + Synpcc7942_1303 0.23 +2.5 1,330,860 - Synpcc7942_1303 0.27 +0.5 1,330,872 - Synpcc7942_1303 0.30 +1.7 1,330,878 - +5.3 1,330,878 - Synpcc7942_1303 0.32 +3.6 1,330,950 - Synpcc7942_1303 0.50 -0.5 1,330,996 - Synpcc7942_1303 0.61 -2.4 1,331,065 + Synpcc7942_1303 0.78 +1.1 1,331,065 + Synpcc7942_1303 0.78 +0.4 1,331,075 + Synpcc7942_1303 0.81 -3.4 1,331,097 + Synpcc7942_1303 0.86 -1.8 1,331,105 - Synpcc7942_1303 0.88 -3.1 1,331,135 - -1.5
Or see this region's nucleotide sequence