Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fur and ycf54 are separated by 224 nucleotides ycf54 and Synpcc7942_0989 are separated by 104 nucleotides Synpcc7942_0989 and cobU are separated by 89 nucleotides cobU and pxcA are separated by 9 nucleotides
Synpcc7942_0987: fur - putative ferric uptake regulator, FUR family, at 996,280 to 996,723
fur
Synpcc7942_0988: ycf54 - conserved hypothetical protein YCF54, at 996,948 to 997,274
ycf54
Synpcc7942_0989: Synpcc7942_0989 - hypothetical protein, at 997,379 to 997,822
_0989
Synpcc7942_0990: cobU - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 997,912 to 998,454
cobU
Synpcc7942_0991: pxcA - proton extrusion protein PcxA, at 998,464 to 999,729
pxcA
Position (kb) 997
998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 996.769 kb on + strand at 996.802 kb on - strand at 996.804 kb on + strand at 996.804 kb on + strand at 996.822 kb on - strand at 996.841 kb on + strand at 996.841 kb on + strand at 996.849 kb on - strand at 996.849 kb on - strand at 996.849 kb on - strand at 996.849 kb on - strand at 996.851 kb on + strand at 996.851 kb on + strand at 996.882 kb on - strand at 996.917 kb on + strand at 996.917 kb on + strand at 996.917 kb on + strand at 996.917 kb on - strand at 996.917 kb on - strand at 996.925 kb on - strand at 996.925 kb on - strand at 996.953 kb on - strand at 997.325 kb on + strand at 997.333 kb on - strand at 997.393 kb on - strand at 997.458 kb on - strand, within Synpcc7942_0989 at 997.459 kb on - strand, within Synpcc7942_0989 at 997.473 kb on + strand, within Synpcc7942_0989 at 997.507 kb on + strand, within Synpcc7942_0989 at 997.515 kb on - strand, within Synpcc7942_0989 at 997.518 kb on + strand at 997.526 kb on - strand, within Synpcc7942_0989 at 997.529 kb on + strand, within Synpcc7942_0989 at 997.529 kb on + strand, within Synpcc7942_0989 at 997.531 kb on - strand, within Synpcc7942_0989 at 997.537 kb on - strand, within Synpcc7942_0989 at 997.537 kb on - strand, within Synpcc7942_0989 at 997.561 kb on + strand, within Synpcc7942_0989 at 997.561 kb on + strand, within Synpcc7942_0989 at 997.561 kb on + strand, within Synpcc7942_0989 at 997.561 kb on + strand, within Synpcc7942_0989 at 997.569 kb on - strand, within Synpcc7942_0989 at 997.569 kb on - strand, within Synpcc7942_0989 at 997.569 kb on - strand, within Synpcc7942_0989 at 997.569 kb on - strand, within Synpcc7942_0989 at 997.580 kb on + strand, within Synpcc7942_0989 at 997.582 kb on - strand, within Synpcc7942_0989 at 997.599 kb on + strand, within Synpcc7942_0989 at 997.607 kb on - strand, within Synpcc7942_0989 at 997.607 kb on - strand, within Synpcc7942_0989 at 997.607 kb on - strand at 997.626 kb on + strand, within Synpcc7942_0989 at 997.652 kb on - strand, within Synpcc7942_0989 at 997.695 kb on + strand, within Synpcc7942_0989 at 997.700 kb on + strand, within Synpcc7942_0989 at 997.703 kb on - strand, within Synpcc7942_0989 at 997.723 kb on + strand, within Synpcc7942_0989 at 997.731 kb on + strand, within Synpcc7942_0989 at 997.731 kb on + strand, within Synpcc7942_0989 at 997.731 kb on + strand, within Synpcc7942_0989 at 997.744 kb on - strand, within Synpcc7942_0989 at 997.766 kb on + strand, within Synpcc7942_0989 at 997.774 kb on + strand, within Synpcc7942_0989 at 997.776 kb on - strand, within Synpcc7942_0989 at 997.820 kb on - strand at 997.843 kb on + strand at 998.452 kb on - strand at 998.642 kb on + strand, within pxcA at 998.647 kb on + strand, within pxcA at 998.647 kb on + strand, within pxcA at 998.653 kb on + strand, within pxcA
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 996,769 + +4.7 996,802 - +2.1 996,804 + +0.2 996,804 + -0.2 996,822 - +0.8 996,841 + -2.9 996,841 + -2.2 996,849 - -0.6 996,849 - +1.0 996,849 - +1.0 996,849 - +0.6 996,851 + +0.0 996,851 + -1.8 996,882 - -2.0 996,917 + +3.1 996,917 + -0.8 996,917 + -1.9 996,917 - -0.6 996,917 - +1.2 996,925 - +3.7 996,925 - -2.2 996,953 - +1.6 997,325 + +3.3 997,333 - -1.3 997,393 - +1.0 997,458 - Synpcc7942_0989 0.18 +0.0 997,459 - Synpcc7942_0989 0.18 +0.0 997,473 + Synpcc7942_0989 0.21 -0.8 997,507 + Synpcc7942_0989 0.29 +1.4 997,515 - Synpcc7942_0989 0.31 -0.5 997,518 + +0.0 997,526 - Synpcc7942_0989 0.33 +0.7 997,529 + Synpcc7942_0989 0.34 -1.3 997,529 + Synpcc7942_0989 0.34 +2.4 997,531 - Synpcc7942_0989 0.34 +2.3 997,537 - Synpcc7942_0989 0.36 +2.2 997,537 - Synpcc7942_0989 0.36 -1.7 997,561 + Synpcc7942_0989 0.41 -3.1 997,561 + Synpcc7942_0989 0.41 +1.0 997,561 + Synpcc7942_0989 0.41 -0.6 997,561 + Synpcc7942_0989 0.41 -0.5 997,569 - Synpcc7942_0989 0.43 +1.3 997,569 - Synpcc7942_0989 0.43 -0.6 997,569 - Synpcc7942_0989 0.43 -0.6 997,569 - Synpcc7942_0989 0.43 -3.2 997,580 + Synpcc7942_0989 0.45 -1.0 997,582 - Synpcc7942_0989 0.46 +1.9 997,599 + Synpcc7942_0989 0.50 -1.6 997,607 - Synpcc7942_0989 0.51 -0.6 997,607 - Synpcc7942_0989 0.51 +2.8 997,607 - +0.0 997,626 + Synpcc7942_0989 0.56 +0.7 997,652 - Synpcc7942_0989 0.61 -2.0 997,695 + Synpcc7942_0989 0.71 -2.3 997,700 + Synpcc7942_0989 0.72 -0.6 997,703 - Synpcc7942_0989 0.73 -1.8 997,723 + Synpcc7942_0989 0.77 +3.0 997,731 + Synpcc7942_0989 0.79 +2.1 997,731 + Synpcc7942_0989 0.79 +0.1 997,731 + Synpcc7942_0989 0.79 -1.3 997,744 - Synpcc7942_0989 0.82 -2.2 997,766 + Synpcc7942_0989 0.87 +2.0 997,774 + Synpcc7942_0989 0.89 -0.6 997,776 - Synpcc7942_0989 0.89 +1.3 997,820 - +0.2 997,843 + +0.0 998,452 - -1.3 998,642 + pxcA Synpcc7942_0991 0.14 +2.8 998,647 + pxcA Synpcc7942_0991 0.14 -0.3 998,647 + pxcA Synpcc7942_0991 0.14 -1.3 998,653 + pxcA Synpcc7942_0991 0.15 -1.0
Or see this region's nucleotide sequence