Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0912

Experiment: A22 0.000341796875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycf57 and Synpcc7942_0910 are separated by 68 nucleotidesSynpcc7942_0910 and Synpcc7942_0911 are separated by 9 nucleotidesSynpcc7942_0911 and dnaX are separated by 75 nucleotidesdnaX and Synpcc7942_0913 are separated by 2 nucleotidesSynpcc7942_0913 and Synpcc7942_0914 overlap by 1 nucleotides Synpcc7942_0909: ycf57 - HesB/YadR/YfhF, at 918,135 to 918,491 ycf57 Synpcc7942_0910: Synpcc7942_0910 - hypothetical protein, at 918,560 to 918,988 _0910 Synpcc7942_0911: Synpcc7942_0911 - hypothetical protein, at 918,998 to 919,249 _0911 Synpcc7942_0912: dnaX - DNA polymerase III, tau subunit, at 919,325 to 921,283 dnaX Synpcc7942_0913: Synpcc7942_0913 - N-acetyltransferase-like, at 921,286 to 921,780 _0913 Synpcc7942_0914: Synpcc7942_0914 - tRNA-(MS(2)IO(6)A)-hydroxylase-like, at 921,780 to 922,391 _0914 Position (kb) 919 920 921 922Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 918.335 kb on - strand, within ycf57at 918.361 kb on - strand, within ycf57at 918.424 kb on - strand, within ycf57at 918.437 kb on + strand, within ycf57at 918.443 kb on + strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.453 kb on + strand, within ycf57at 918.461 kb on - strandat 918.476 kb on + strandat 918.516 kb on + strandat 918.521 kb on + strandat 918.521 kb on + strandat 918.524 kb on - strandat 918.589 kb on + strandat 918.618 kb on - strand, within Synpcc7942_0910at 918.668 kb on + strand, within Synpcc7942_0910at 918.676 kb on - strand, within Synpcc7942_0910at 918.679 kb on + strand, within Synpcc7942_0910at 918.688 kb on + strand, within Synpcc7942_0910at 918.689 kb on + strand, within Synpcc7942_0910at 918.742 kb on + strand, within Synpcc7942_0910at 918.769 kb on + strand, within Synpcc7942_0910at 918.781 kb on + strand, within Synpcc7942_0910at 918.782 kb on - strand, within Synpcc7942_0910at 918.796 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.837 kb on - strand, within Synpcc7942_0910at 918.837 kb on - strand, within Synpcc7942_0910at 918.837 kb on - strand, within Synpcc7942_0910at 918.847 kb on + strand, within Synpcc7942_0910at 918.863 kb on - strand, within Synpcc7942_0910at 918.882 kb on + strand, within Synpcc7942_0910at 918.882 kb on + strand, within Synpcc7942_0910at 918.882 kb on + strandat 918.882 kb on + strand, within Synpcc7942_0910at 918.882 kb on + strand, within Synpcc7942_0910at 918.894 kb on + strand, within Synpcc7942_0910at 918.902 kb on - strand, within Synpcc7942_0910at 918.902 kb on - strand, within Synpcc7942_0910at 918.923 kb on + strand, within Synpcc7942_0910at 918.931 kb on + strand, within Synpcc7942_0910at 918.931 kb on - strand, within Synpcc7942_0910at 918.951 kb on + strandat 918.953 kb on - strandat 918.958 kb on - strandat 918.967 kb on + strandat 918.975 kb on - strandat 918.983 kb on + strandat 918.983 kb on + strandat 918.983 kb on + strandat 918.995 kb on - strandat 919.013 kb on - strandat 919.050 kb on + strand, within Synpcc7942_0911at 919.067 kb on - strandat 919.088 kb on + strand, within Synpcc7942_0911at 919.088 kb on + strand, within Synpcc7942_0911at 919.094 kb on - strandat 919.096 kb on - strand, within Synpcc7942_0911at 919.096 kb on - strand, within Synpcc7942_0911at 919.120 kb on - strand, within Synpcc7942_0911at 919.127 kb on - strand, within Synpcc7942_0911at 919.164 kb on + strand, within Synpcc7942_0911at 919.172 kb on - strand, within Synpcc7942_0911at 919.172 kb on - strand, within Synpcc7942_0911at 919.172 kb on - strand, within Synpcc7942_0911at 919.174 kb on + strand, within Synpcc7942_0911at 919.190 kb on + strand, within Synpcc7942_0911at 919.193 kb on - strand, within Synpcc7942_0911at 919.193 kb on - strandat 919.193 kb on - strand, within Synpcc7942_0911at 919.198 kb on - strand, within Synpcc7942_0911at 919.198 kb on - strand, within Synpcc7942_0911at 919.200 kb on - strand, within Synpcc7942_0911at 919.207 kb on + strand, within Synpcc7942_0911at 919.209 kb on - strand, within Synpcc7942_0911at 919.244 kb on + strandat 919.252 kb on - strandat 919.271 kb on - strandat 919.282 kb on + strandat 919.295 kb on - strandat 919.322 kb on - strandat 921.230 kb on - strandat 921.285 kb on + strandat 921.328 kb on - strandat 921.329 kb on + strandat 921.337 kb on - strand, within Synpcc7942_0913at 921.384 kb on - strand, within Synpcc7942_0913at 921.391 kb on - strand, within Synpcc7942_0913at 921.391 kb on - strand, within Synpcc7942_0913at 921.460 kb on - strand, within Synpcc7942_0913at 921.466 kb on - strand, within Synpcc7942_0913at 921.468 kb on + strand, within Synpcc7942_0913at 921.474 kb on + strand, within Synpcc7942_0913at 921.489 kb on + strand, within Synpcc7942_0913at 921.522 kb on - strand, within Synpcc7942_0913at 921.544 kb on - strand, within Synpcc7942_0913at 921.557 kb on - strand, within Synpcc7942_0913at 921.583 kb on - strand, within Synpcc7942_0913at 921.640 kb on - strand, within Synpcc7942_0913at 921.670 kb on + strand, within Synpcc7942_0913at 921.676 kb on + strand, within Synpcc7942_0913at 921.691 kb on + strand, within Synpcc7942_0913at 921.716 kb on - strand, within Synpcc7942_0913at 921.735 kb on + strandat 921.747 kb on + strandat 921.755 kb on - strandat 921.784 kb on - strandat 921.784 kb on - strandat 921.786 kb on + strandat 921.786 kb on + strandat 921.786 kb on - strandat 921.794 kb on - strandat 921.794 kb on - strandat 921.795 kb on + strandat 921.819 kb on - strandat 921.821 kb on - strandat 921.861 kb on - strand, within Synpcc7942_0914at 921.861 kb on - strand, within Synpcc7942_0914at 921.920 kb on + strand, within Synpcc7942_0914at 921.928 kb on - strand, within Synpcc7942_0914at 921.930 kb on - strand, within Synpcc7942_0914at 921.938 kb on - strand, within Synpcc7942_0914at 921.988 kb on + strand, within Synpcc7942_0914at 922.000 kb on + strand, within Synpcc7942_0914at 922.003 kb on - strand, within Synpcc7942_0914at 922.003 kb on - strand, within Synpcc7942_0914at 922.054 kb on + strand, within Synpcc7942_0914at 922.067 kb on + strand, within Synpcc7942_0914at 922.072 kb on + strand, within Synpcc7942_0914at 922.072 kb on + strand, within Synpcc7942_0914at 922.072 kb on + strand, within Synpcc7942_0914at 922.075 kb on - strand, within Synpcc7942_0914at 922.077 kb on + strand, within Synpcc7942_0914at 922.080 kb on - strand, within Synpcc7942_0914at 922.082 kb on + strand, within Synpcc7942_0914at 922.095 kb on + strand, within Synpcc7942_0914at 922.099 kb on + strand, within Synpcc7942_0914at 922.103 kb on - strand, within Synpcc7942_0914at 922.132 kb on + strand, within Synpcc7942_0914at 922.133 kb on - strand, within Synpcc7942_0914at 922.133 kb on - strand, within Synpcc7942_0914at 922.144 kb on + strand, within Synpcc7942_0914at 922.144 kb on + strand, within Synpcc7942_0914at 922.144 kb on + strand, within Synpcc7942_0914at 922.144 kb on + strand, within Synpcc7942_0914at 922.144 kb on + strand, within Synpcc7942_0914at 922.152 kb on - strand, within Synpcc7942_0914at 922.152 kb on - strand, within Synpcc7942_0914at 922.154 kb on + strand, within Synpcc7942_0914at 922.162 kb on - strand, within Synpcc7942_0914at 922.172 kb on + strand, within Synpcc7942_0914at 922.172 kb on - strand, within Synpcc7942_0914at 922.180 kb on - strand, within Synpcc7942_0914at 922.180 kb on - strand, within Synpcc7942_0914at 922.183 kb on + strand, within Synpcc7942_0914at 922.186 kb on - strand, within Synpcc7942_0914at 922.191 kb on - strand, within Synpcc7942_0914at 922.205 kb on + strand, within Synpcc7942_0914at 922.213 kb on - strand, within Synpcc7942_0914at 922.243 kb on - strand, within Synpcc7942_0914at 922.249 kb on - strand, within Synpcc7942_0914at 922.271 kb on + strand, within Synpcc7942_0914at 922.275 kb on - strand, within Synpcc7942_0914

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml
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918,335 - ycf57 Synpcc7942_0909 0.56 -1.0
918,361 - ycf57 Synpcc7942_0909 0.63 -1.6
918,424 - ycf57 Synpcc7942_0909 0.81 -1.0
918,437 + ycf57 Synpcc7942_0909 0.85 -0.0
918,443 + ycf57 Synpcc7942_0909 0.86 -4.7
918,451 - ycf57 Synpcc7942_0909 0.89 +1.0
918,451 - ycf57 Synpcc7942_0909 0.89 -1.4
918,451 - ycf57 Synpcc7942_0909 0.89 -1.0
918,451 - ycf57 Synpcc7942_0909 0.89 -0.0
918,453 + ycf57 Synpcc7942_0909 0.89 -1.4
918,461 - -2.5
918,476 + +1.0
918,516 + +2.5
918,521 + -0.0
918,521 + -1.0
918,524 - -1.0
918,589 + -1.0
918,618 - Synpcc7942_0910 0.14 -0.6
918,668 + Synpcc7942_0910 0.25 -1.0
918,676 - Synpcc7942_0910 0.27 -0.6
918,679 + Synpcc7942_0910 0.28 -1.0
918,688 + Synpcc7942_0910 0.30 +0.5
918,689 + Synpcc7942_0910 0.30 +1.3
918,742 + Synpcc7942_0910 0.42 +1.0
918,769 + Synpcc7942_0910 0.49 +0.5
918,781 + Synpcc7942_0910 0.52 -3.1
918,782 - Synpcc7942_0910 0.52 -0.4
918,796 + Synpcc7942_0910 0.55 +3.7
918,829 + Synpcc7942_0910 0.63 -0.0
918,829 + Synpcc7942_0910 0.63 +1.0
918,829 + Synpcc7942_0910 0.63 -2.2
918,829 + Synpcc7942_0910 0.63 -3.3
918,829 + Synpcc7942_0910 0.63 -0.9
918,837 - Synpcc7942_0910 0.65 +0.5
918,837 - Synpcc7942_0910 0.65 -1.9
918,837 - Synpcc7942_0910 0.65 +3.7
918,847 + Synpcc7942_0910 0.67 -3.0
918,863 - Synpcc7942_0910 0.71 -0.6
918,882 + Synpcc7942_0910 0.75 -1.0
918,882 + Synpcc7942_0910 0.75 -1.6
918,882 + +1.0
918,882 + Synpcc7942_0910 0.75 -0.9
918,882 + Synpcc7942_0910 0.75 -0.6
918,894 + Synpcc7942_0910 0.78 -2.0
918,902 - Synpcc7942_0910 0.80 +1.3
918,902 - Synpcc7942_0910 0.80 +1.0
918,923 + Synpcc7942_0910 0.85 -2.6
918,931 + Synpcc7942_0910 0.86 -0.0
918,931 - Synpcc7942_0910 0.86 -0.6
918,951 + +1.9
918,953 - +1.3
918,958 - -2.2
918,967 + +0.9
918,975 - +2.0
918,983 + +1.0
918,983 + +1.8
918,983 + -0.5
918,995 - -0.4
919,013 - -0.0
919,050 + Synpcc7942_0911 0.21 +3.0
919,067 - +1.0
919,088 + Synpcc7942_0911 0.36 +3.0
919,088 + Synpcc7942_0911 0.36 -1.6
919,094 - -1.4
919,096 - Synpcc7942_0911 0.39 -0.7
919,096 - Synpcc7942_0911 0.39 +2.1
919,120 - Synpcc7942_0911 0.48 -1.2
919,127 - Synpcc7942_0911 0.51 -1.9
919,164 + Synpcc7942_0911 0.66 -1.9
919,172 - Synpcc7942_0911 0.69 +0.2
919,172 - Synpcc7942_0911 0.69 -1.6
919,172 - Synpcc7942_0911 0.69 +0.8
919,174 + Synpcc7942_0911 0.70 +1.0
919,190 + Synpcc7942_0911 0.76 -1.4
919,193 - Synpcc7942_0911 0.77 -1.9
919,193 - +1.0
919,193 - Synpcc7942_0911 0.77 +2.5
919,198 - Synpcc7942_0911 0.79 -0.0
919,198 - Synpcc7942_0911 0.79 -0.9
919,200 - Synpcc7942_0911 0.80 +3.9
919,207 + Synpcc7942_0911 0.83 +0.4
919,209 - Synpcc7942_0911 0.84 -1.0
919,244 + -1.9
919,252 - -2.2
919,271 - +1.0
919,282 + -0.6
919,295 - -1.0
919,322 - -0.6
921,230 - -2.9
921,285 + -4.3
921,328 - +1.6
921,329 + -2.2
921,337 - Synpcc7942_0913 0.10 -0.6
921,384 - Synpcc7942_0913 0.20 -2.8
921,391 - Synpcc7942_0913 0.21 +2.1
921,391 - Synpcc7942_0913 0.21 +2.6
921,460 - Synpcc7942_0913 0.35 +1.7
921,466 - Synpcc7942_0913 0.36 +2.5
921,468 + Synpcc7942_0913 0.37 +0.1
921,474 + Synpcc7942_0913 0.38 +0.5
921,489 + Synpcc7942_0913 0.41 +1.0
921,522 - Synpcc7942_0913 0.48 -0.6
921,544 - Synpcc7942_0913 0.52 +1.0
921,557 - Synpcc7942_0913 0.55 +2.5
921,583 - Synpcc7942_0913 0.60 -1.4
921,640 - Synpcc7942_0913 0.72 -1.4
921,670 + Synpcc7942_0913 0.78 +0.2
921,676 + Synpcc7942_0913 0.79 -0.6
921,691 + Synpcc7942_0913 0.82 -1.6
921,716 - Synpcc7942_0913 0.87 -0.6
921,735 + +3.7
921,747 + -0.6
921,755 - -0.0
921,784 - -1.9
921,784 - -2.5
921,786 + -1.4
921,786 + +1.0
921,786 - -1.4
921,794 - -2.5
921,794 - -1.4
921,795 + +0.5
921,819 - +5.3
921,821 - -1.2
921,861 - Synpcc7942_0914 0.13 -1.0
921,861 - Synpcc7942_0914 0.13 +0.4
921,920 + Synpcc7942_0914 0.23 -1.0
921,928 - Synpcc7942_0914 0.24 -0.4
921,930 - Synpcc7942_0914 0.25 -0.3
921,938 - Synpcc7942_0914 0.26 +1.7
921,988 + Synpcc7942_0914 0.34 +0.8
922,000 + Synpcc7942_0914 0.36 -1.4
922,003 - Synpcc7942_0914 0.36 -0.6
922,003 - Synpcc7942_0914 0.36 +2.5
922,054 + Synpcc7942_0914 0.45 -0.0
922,067 + Synpcc7942_0914 0.47 -2.0
922,072 + Synpcc7942_0914 0.48 +2.1
922,072 + Synpcc7942_0914 0.48 +2.0
922,072 + Synpcc7942_0914 0.48 +1.2
922,075 - Synpcc7942_0914 0.48 +0.5
922,077 + Synpcc7942_0914 0.49 +2.3
922,080 - Synpcc7942_0914 0.49 -0.6
922,082 + Synpcc7942_0914 0.49 -1.9
922,095 + Synpcc7942_0914 0.51 -0.0
922,099 + Synpcc7942_0914 0.52 +2.8
922,103 - Synpcc7942_0914 0.53 -1.0
922,132 + Synpcc7942_0914 0.58 +1.0
922,133 - Synpcc7942_0914 0.58 +0.9
922,133 - Synpcc7942_0914 0.58 +2.0
922,144 + Synpcc7942_0914 0.59 -2.9
922,144 + Synpcc7942_0914 0.59 -1.0
922,144 + Synpcc7942_0914 0.59 +1.0
922,144 + Synpcc7942_0914 0.59 -1.0
922,144 + Synpcc7942_0914 0.59 -0.0
922,152 - Synpcc7942_0914 0.61 -1.9
922,152 - Synpcc7942_0914 0.61 +1.0
922,154 + Synpcc7942_0914 0.61 -1.0
922,162 - Synpcc7942_0914 0.62 -1.0
922,172 + Synpcc7942_0914 0.64 -1.4
922,172 - Synpcc7942_0914 0.64 -2.0
922,180 - Synpcc7942_0914 0.65 -2.0
922,180 - Synpcc7942_0914 0.65 -0.9
922,183 + Synpcc7942_0914 0.66 +1.4
922,186 - Synpcc7942_0914 0.66 +1.0
922,191 - Synpcc7942_0914 0.67 -3.2
922,205 + Synpcc7942_0914 0.69 -0.0
922,213 - Synpcc7942_0914 0.71 -3.8
922,243 - Synpcc7942_0914 0.76 -2.0
922,249 - Synpcc7942_0914 0.77 -1.4
922,271 + Synpcc7942_0914 0.80 -0.0
922,275 - Synpcc7942_0914 0.81 -2.0

Or see this region's nucleotide sequence