Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0907 and Synpcc7942_0908 are separated by 113 nucleotides Synpcc7942_0908 and ycf57 are separated by 147 nucleotides ycf57 and Synpcc7942_0910 are separated by 68 nucleotides Synpcc7942_0910 and Synpcc7942_0911 are separated by 9 nucleotides Synpcc7942_0911 and dnaX are separated by 75 nucleotides
Synpcc7942_0907: Synpcc7942_0907 - hypothetical protein, at 916,954 to 917,166
_0907
Synpcc7942_0908: Synpcc7942_0908 - hypothetical protein, at 917,280 to 917,987
_0908
Synpcc7942_0909: ycf57 - HesB/YadR/YfhF, at 918,135 to 918,491
ycf57
Synpcc7942_0910: Synpcc7942_0910 - hypothetical protein, at 918,560 to 918,988
_0910
Synpcc7942_0911: Synpcc7942_0911 - hypothetical protein, at 918,998 to 919,249
_0911
Synpcc7942_0912: dnaX - DNA polymerase III, tau subunit, at 919,325 to 921,283
dnaX
Position (kb) 918
919 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 917.202 kb on - strand at 917.204 kb on + strand at 917.204 kb on + strand at 917.204 kb on + strand at 917.212 kb on - strand at 917.212 kb on - strand at 917.213 kb on + strand at 917.213 kb on + strand at 917.213 kb on + strand at 917.221 kb on - strand at 917.221 kb on - strand at 917.231 kb on + strand at 917.246 kb on + strand at 917.246 kb on + strand at 917.246 kb on + strand at 917.253 kb on - strand at 917.254 kb on - strand at 917.254 kb on - strand at 917.254 kb on - strand at 917.257 kb on + strand at 917.257 kb on + strand at 917.265 kb on - strand at 917.265 kb on - strand at 917.265 kb on - strand at 917.278 kb on + strand at 917.285 kb on + strand at 917.286 kb on - strand at 917.286 kb on - strand at 917.286 kb on - strand at 917.353 kb on - strand, within Synpcc7942_0908 at 917.367 kb on + strand, within Synpcc7942_0908 at 917.399 kb on - strand, within Synpcc7942_0908 at 917.399 kb on - strand, within Synpcc7942_0908 at 917.405 kb on + strand, within Synpcc7942_0908 at 917.412 kb on - strand, within Synpcc7942_0908 at 917.413 kb on - strand, within Synpcc7942_0908 at 917.492 kb on + strand, within Synpcc7942_0908 at 917.500 kb on - strand, within Synpcc7942_0908 at 917.505 kb on + strand, within Synpcc7942_0908 at 917.513 kb on + strand, within Synpcc7942_0908 at 917.529 kb on + strand, within Synpcc7942_0908 at 917.557 kb on + strand, within Synpcc7942_0908 at 917.587 kb on - strand, within Synpcc7942_0908 at 917.616 kb on - strand, within Synpcc7942_0908 at 917.628 kb on + strand, within Synpcc7942_0908 at 917.702 kb on - strand, within Synpcc7942_0908 at 917.727 kb on + strand, within Synpcc7942_0908 at 917.786 kb on - strand, within Synpcc7942_0908 at 917.798 kb on - strand, within Synpcc7942_0908 at 917.828 kb on + strand, within Synpcc7942_0908 at 917.828 kb on + strand, within Synpcc7942_0908 at 917.841 kb on + strand, within Synpcc7942_0908 at 917.849 kb on - strand, within Synpcc7942_0908 at 917.876 kb on + strand, within Synpcc7942_0908 at 917.884 kb on - strand, within Synpcc7942_0908 at 917.899 kb on + strand, within Synpcc7942_0908 at 917.899 kb on - strand, within Synpcc7942_0908 at 917.910 kb on - strand, within Synpcc7942_0908 at 917.917 kb on - strand at 917.929 kb on - strand at 917.988 kb on + strand at 917.988 kb on + strand at 917.988 kb on + strand at 917.988 kb on + strand at 917.995 kb on + strand at 917.996 kb on - strand at 917.996 kb on - strand at 917.996 kb on - strand at 918.003 kb on + strand at 918.003 kb on + strand at 918.003 kb on + strand at 918.003 kb on + strand at 918.003 kb on - strand at 918.011 kb on - strand at 918.011 kb on - strand at 918.011 kb on - strand at 918.016 kb on - strand at 918.023 kb on - strand at 918.029 kb on - strand at 918.048 kb on + strand at 918.058 kb on - strand at 918.074 kb on - strand at 918.112 kb on - strand at 918.124 kb on + strand at 918.132 kb on - strand at 918.205 kb on - strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.278 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.298 kb on + strand at 918.306 kb on - strand, within ycf57 at 918.306 kb on - strand, within ycf57 at 918.335 kb on - strand, within ycf57 at 918.361 kb on - strand, within ycf57 at 918.424 kb on - strand, within ycf57 at 918.437 kb on + strand, within ycf57 at 918.443 kb on + strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.453 kb on + strand, within ycf57 at 918.461 kb on - strand at 918.476 kb on + strand at 918.516 kb on + strand at 918.521 kb on + strand at 918.521 kb on + strand at 918.524 kb on - strand at 918.589 kb on + strand at 918.618 kb on - strand, within Synpcc7942_0910 at 918.668 kb on + strand, within Synpcc7942_0910 at 918.676 kb on - strand, within Synpcc7942_0910 at 918.679 kb on + strand, within Synpcc7942_0910 at 918.688 kb on + strand, within Synpcc7942_0910 at 918.689 kb on + strand, within Synpcc7942_0910 at 918.742 kb on + strand, within Synpcc7942_0910 at 918.769 kb on + strand, within Synpcc7942_0910 at 918.781 kb on + strand, within Synpcc7942_0910 at 918.782 kb on - strand, within Synpcc7942_0910 at 918.796 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.837 kb on - strand, within Synpcc7942_0910 at 918.837 kb on - strand, within Synpcc7942_0910 at 918.837 kb on - strand, within Synpcc7942_0910 at 918.847 kb on + strand, within Synpcc7942_0910 at 918.863 kb on - strand, within Synpcc7942_0910 at 918.882 kb on + strand, within Synpcc7942_0910 at 918.882 kb on + strand, within Synpcc7942_0910 at 918.882 kb on + strand at 918.882 kb on + strand, within Synpcc7942_0910 at 918.882 kb on + strand, within Synpcc7942_0910 at 918.894 kb on + strand, within Synpcc7942_0910 at 918.902 kb on - strand, within Synpcc7942_0910 at 918.902 kb on - strand, within Synpcc7942_0910 at 918.923 kb on + strand, within Synpcc7942_0910 at 918.931 kb on + strand, within Synpcc7942_0910 at 918.931 kb on - strand, within Synpcc7942_0910 at 918.951 kb on + strand at 918.953 kb on - strand at 918.958 kb on - strand at 918.967 kb on + strand at 918.975 kb on - strand at 918.983 kb on + strand at 918.983 kb on + strand at 918.983 kb on + strand at 918.995 kb on - strand at 919.013 kb on - strand at 919.050 kb on + strand, within Synpcc7942_0911 at 919.067 kb on - strand at 919.088 kb on + strand, within Synpcc7942_0911 at 919.088 kb on + strand, within Synpcc7942_0911 at 919.094 kb on - strand at 919.096 kb on - strand, within Synpcc7942_0911 at 919.096 kb on - strand, within Synpcc7942_0911 at 919.120 kb on - strand, within Synpcc7942_0911 at 919.127 kb on - strand, within Synpcc7942_0911 at 919.164 kb on + strand, within Synpcc7942_0911 at 919.172 kb on - strand, within Synpcc7942_0911 at 919.172 kb on - strand, within Synpcc7942_0911 at 919.172 kb on - strand, within Synpcc7942_0911 at 919.174 kb on + strand, within Synpcc7942_0911 at 919.190 kb on + strand, within Synpcc7942_0911 at 919.193 kb on - strand, within Synpcc7942_0911 at 919.193 kb on - strand at 919.193 kb on - strand, within Synpcc7942_0911 at 919.198 kb on - strand, within Synpcc7942_0911 at 919.198 kb on - strand, within Synpcc7942_0911 at 919.200 kb on - strand, within Synpcc7942_0911 at 919.207 kb on + strand, within Synpcc7942_0911 at 919.209 kb on - strand, within Synpcc7942_0911 at 919.244 kb on + strand at 919.252 kb on - strand at 919.271 kb on - strand at 919.282 kb on + strand at 919.295 kb on - strand at 919.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 917,202 - +1.7 917,204 + -2.7 917,204 + -2.2 917,204 + -1.4 917,212 - -1.6 917,212 - -2.4 917,213 + +1.4 917,213 + -0.0 917,213 + +2.9 917,221 - +0.2 917,221 - +1.0 917,231 + -0.6 917,246 + -2.6 917,246 + +0.6 917,246 + +1.6 917,253 - -2.6 917,254 - +1.0 917,254 - -0.0 917,254 - +1.0 917,257 + -1.2 917,257 + -0.5 917,265 - +1.0 917,265 - -0.0 917,265 - -1.4 917,278 + +0.3 917,285 + +1.0 917,286 - -1.6 917,286 - +0.8 917,286 - +2.5 917,353 - Synpcc7942_0908 0.10 -0.0 917,367 + Synpcc7942_0908 0.12 +0.3 917,399 - Synpcc7942_0908 0.17 -0.0 917,399 - Synpcc7942_0908 0.17 -0.4 917,405 + Synpcc7942_0908 0.18 +1.4 917,412 - Synpcc7942_0908 0.19 +0.8 917,413 - Synpcc7942_0908 0.19 +1.2 917,492 + Synpcc7942_0908 0.30 -0.1 917,500 - Synpcc7942_0908 0.31 +0.3 917,505 + Synpcc7942_0908 0.32 +1.0 917,513 + Synpcc7942_0908 0.33 +0.9 917,529 + Synpcc7942_0908 0.35 +0.2 917,557 + Synpcc7942_0908 0.39 -0.4 917,587 - Synpcc7942_0908 0.43 +1.4 917,616 - Synpcc7942_0908 0.47 +0.2 917,628 + Synpcc7942_0908 0.49 -0.0 917,702 - Synpcc7942_0908 0.60 -1.2 917,727 + Synpcc7942_0908 0.63 -0.0 917,786 - Synpcc7942_0908 0.71 -0.8 917,798 - Synpcc7942_0908 0.73 +0.3 917,828 + Synpcc7942_0908 0.77 -1.4 917,828 + Synpcc7942_0908 0.77 +0.1 917,841 + Synpcc7942_0908 0.79 -1.4 917,849 - Synpcc7942_0908 0.80 +1.0 917,876 + Synpcc7942_0908 0.84 -0.1 917,884 - Synpcc7942_0908 0.85 +1.5 917,899 + Synpcc7942_0908 0.87 +2.5 917,899 - Synpcc7942_0908 0.87 -2.5 917,910 - Synpcc7942_0908 0.89 -2.0 917,917 - -0.6 917,929 - +0.8 917,988 + -2.0 917,988 + -1.0 917,988 + +1.6 917,988 + -2.6 917,995 + -2.5 917,996 - +1.0 917,996 - -0.6 917,996 - +2.4 918,003 + -2.0 918,003 + -2.0 918,003 + -0.6 918,003 + -1.0 918,003 - +1.5 918,011 - -1.4 918,011 - -2.7 918,011 - -2.2 918,016 - +1.5 918,023 - -1.0 918,029 - +2.9 918,048 + -0.0 918,058 - -4.5 918,074 - +0.6 918,112 - -2.6 918,124 + -1.7 918,132 - -1.0 918,205 - ycf57 Synpcc7942_0909 0.20 -1.0 918,275 + ycf57 Synpcc7942_0909 0.39 -2.5 918,275 + ycf57 Synpcc7942_0909 0.39 -2.4 918,275 + ycf57 Synpcc7942_0909 0.39 -1.0 918,275 + ycf57 Synpcc7942_0909 0.39 -0.6 918,275 + ycf57 Synpcc7942_0909 0.39 -0.6 918,275 + ycf57 Synpcc7942_0909 0.39 -1.9 918,275 + ycf57 Synpcc7942_0909 0.39 -1.2 918,275 + ycf57 Synpcc7942_0909 0.39 -0.6 918,275 + ycf57 Synpcc7942_0909 0.39 +1.0 918,278 - ycf57 Synpcc7942_0909 0.40 -2.0 918,283 - ycf57 Synpcc7942_0909 0.41 -2.0 918,283 - ycf57 Synpcc7942_0909 0.41 -0.6 918,283 - ycf57 Synpcc7942_0909 0.41 -1.0 918,283 - ycf57 Synpcc7942_0909 0.41 -0.6 918,283 - ycf57 Synpcc7942_0909 0.41 -2.4 918,283 - ycf57 Synpcc7942_0909 0.41 -0.0 918,283 - ycf57 Synpcc7942_0909 0.41 -2.6 918,283 - ycf57 Synpcc7942_0909 0.41 -1.6 918,298 + +1.0 918,306 - ycf57 Synpcc7942_0909 0.48 -1.0 918,306 - ycf57 Synpcc7942_0909 0.48 -0.0 918,335 - ycf57 Synpcc7942_0909 0.56 -1.0 918,361 - ycf57 Synpcc7942_0909 0.63 -1.6 918,424 - ycf57 Synpcc7942_0909 0.81 -1.0 918,437 + ycf57 Synpcc7942_0909 0.85 -0.0 918,443 + ycf57 Synpcc7942_0909 0.86 -4.7 918,451 - ycf57 Synpcc7942_0909 0.89 +1.0 918,451 - ycf57 Synpcc7942_0909 0.89 -1.4 918,451 - ycf57 Synpcc7942_0909 0.89 -1.0 918,451 - ycf57 Synpcc7942_0909 0.89 -0.0 918,453 + ycf57 Synpcc7942_0909 0.89 -1.4 918,461 - -2.5 918,476 + +1.0 918,516 + +2.5 918,521 + -0.0 918,521 + -1.0 918,524 - -1.0 918,589 + -1.0 918,618 - Synpcc7942_0910 0.14 -0.6 918,668 + Synpcc7942_0910 0.25 -1.0 918,676 - Synpcc7942_0910 0.27 -0.6 918,679 + Synpcc7942_0910 0.28 -1.0 918,688 + Synpcc7942_0910 0.30 +0.5 918,689 + Synpcc7942_0910 0.30 +1.3 918,742 + Synpcc7942_0910 0.42 +1.0 918,769 + Synpcc7942_0910 0.49 +0.5 918,781 + Synpcc7942_0910 0.52 -3.1 918,782 - Synpcc7942_0910 0.52 -0.4 918,796 + Synpcc7942_0910 0.55 +3.7 918,829 + Synpcc7942_0910 0.63 -0.0 918,829 + Synpcc7942_0910 0.63 +1.0 918,829 + Synpcc7942_0910 0.63 -2.2 918,829 + Synpcc7942_0910 0.63 -3.3 918,829 + Synpcc7942_0910 0.63 -0.9 918,837 - Synpcc7942_0910 0.65 +0.5 918,837 - Synpcc7942_0910 0.65 -1.9 918,837 - Synpcc7942_0910 0.65 +3.7 918,847 + Synpcc7942_0910 0.67 -3.0 918,863 - Synpcc7942_0910 0.71 -0.6 918,882 + Synpcc7942_0910 0.75 -1.0 918,882 + Synpcc7942_0910 0.75 -1.6 918,882 + +1.0 918,882 + Synpcc7942_0910 0.75 -0.9 918,882 + Synpcc7942_0910 0.75 -0.6 918,894 + Synpcc7942_0910 0.78 -2.0 918,902 - Synpcc7942_0910 0.80 +1.3 918,902 - Synpcc7942_0910 0.80 +1.0 918,923 + Synpcc7942_0910 0.85 -2.6 918,931 + Synpcc7942_0910 0.86 -0.0 918,931 - Synpcc7942_0910 0.86 -0.6 918,951 + +1.9 918,953 - +1.3 918,958 - -2.2 918,967 + +0.9 918,975 - +2.0 918,983 + +1.0 918,983 + +1.8 918,983 + -0.5 918,995 - -0.4 919,013 - -0.0 919,050 + Synpcc7942_0911 0.21 +3.0 919,067 - +1.0 919,088 + Synpcc7942_0911 0.36 +3.0 919,088 + Synpcc7942_0911 0.36 -1.6 919,094 - -1.4 919,096 - Synpcc7942_0911 0.39 -0.7 919,096 - Synpcc7942_0911 0.39 +2.1 919,120 - Synpcc7942_0911 0.48 -1.2 919,127 - Synpcc7942_0911 0.51 -1.9 919,164 + Synpcc7942_0911 0.66 -1.9 919,172 - Synpcc7942_0911 0.69 +0.2 919,172 - Synpcc7942_0911 0.69 -1.6 919,172 - Synpcc7942_0911 0.69 +0.8 919,174 + Synpcc7942_0911 0.70 +1.0 919,190 + Synpcc7942_0911 0.76 -1.4 919,193 - Synpcc7942_0911 0.77 -1.9 919,193 - +1.0 919,193 - Synpcc7942_0911 0.77 +2.5 919,198 - Synpcc7942_0911 0.79 -0.0 919,198 - Synpcc7942_0911 0.79 -0.9 919,200 - Synpcc7942_0911 0.80 +3.9 919,207 + Synpcc7942_0911 0.83 +0.4 919,209 - Synpcc7942_0911 0.84 -1.0 919,244 + -1.9 919,252 - -2.2 919,271 - +1.0 919,282 + -0.6 919,295 - -1.0 919,322 - -0.6
Or see this region's nucleotide sequence