Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0834 and ruvB are separated by 425 nucleotides ruvB and Synpcc7942_0836 are separated by 377 nucleotides
Synpcc7942_0834: Synpcc7942_0834 - hypothetical protein, at 828,582 to 829,235
_0834
Synpcc7942_0835: ruvB - Holliday junction DNA helicase B, at 829,661 to 830,788
ruvB
Synpcc7942_0836: Synpcc7942_0836 - hypothetical protein, at 831,166 to 832,182
_0836
Position (kb) 829
830
831 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 828.664 kb on + strand, within Synpcc7942_0834 at 828.670 kb on - strand, within Synpcc7942_0834 at 828.682 kb on - strand, within Synpcc7942_0834 at 828.719 kb on + strand, within Synpcc7942_0834 at 828.727 kb on - strand, within Synpcc7942_0834 at 828.741 kb on + strand, within Synpcc7942_0834 at 828.748 kb on + strand, within Synpcc7942_0834 at 828.749 kb on - strand, within Synpcc7942_0834 at 828.761 kb on - strand, within Synpcc7942_0834 at 828.769 kb on + strand, within Synpcc7942_0834 at 828.775 kb on + strand, within Synpcc7942_0834 at 828.783 kb on - strand, within Synpcc7942_0834 at 828.795 kb on - strand, within Synpcc7942_0834 at 828.824 kb on + strand, within Synpcc7942_0834 at 828.833 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.928 kb on + strand, within Synpcc7942_0834 at 828.931 kb on + strand, within Synpcc7942_0834 at 828.936 kb on + strand, within Synpcc7942_0834 at 828.949 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.985 kb on - strand, within Synpcc7942_0834 at 829.015 kb on - strand, within Synpcc7942_0834 at 829.025 kb on + strand, within Synpcc7942_0834 at 829.031 kb on - strand, within Synpcc7942_0834 at 829.158 kb on + strand, within Synpcc7942_0834 at 829.168 kb on - strand, within Synpcc7942_0834 at 829.197 kb on + strand at 829.197 kb on + strand at 829.207 kb on + strand at 829.207 kb on + strand at 829.208 kb on + strand at 829.215 kb on - strand at 829.284 kb on - strand at 829.354 kb on + strand at 829.354 kb on + strand at 829.375 kb on + strand at 829.383 kb on - strand at 829.398 kb on - strand at 829.428 kb on + strand at 829.433 kb on + strand at 829.434 kb on - strand at 829.434 kb on - strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.460 kb on + strand at 829.466 kb on + strand at 829.472 kb on - strand at 829.484 kb on + strand at 829.487 kb on - strand at 829.570 kb on - strand at 829.598 kb on + strand at 829.603 kb on + strand at 829.611 kb on + strand at 829.619 kb on - strand at 829.628 kb on + strand at 829.634 kb on - strand at 830.773 kb on - strand at 830.840 kb on + strand at 830.850 kb on + strand at 830.881 kb on + strand at 830.881 kb on - strand at 830.888 kb on + strand at 830.893 kb on + strand at 830.897 kb on + strand at 830.901 kb on - strand at 830.908 kb on - strand at 830.945 kb on + strand at 830.986 kb on - strand at 831.011 kb on + strand at 831.016 kb on + strand at 831.029 kb on - strand at 831.077 kb on + strand at 831.078 kb on + strand at 831.093 kb on - strand at 831.159 kb on + strand at 831.159 kb on + strand at 831.159 kb on + strand at 831.159 kb on + strand at 831.161 kb on + strand at 831.167 kb on - strand at 831.167 kb on - strand at 831.167 kb on - strand at 831.177 kb on - strand at 831.192 kb on + strand at 831.210 kb on - strand at 831.214 kb on - strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.228 kb on + strand at 831.246 kb on - strand at 831.273 kb on - strand, within Synpcc7942_0836 at 831.287 kb on + strand, within Synpcc7942_0836 at 831.289 kb on + strand, within Synpcc7942_0836 at 831.297 kb on - strand, within Synpcc7942_0836 at 831.309 kb on + strand, within Synpcc7942_0836 at 831.312 kb on - strand, within Synpcc7942_0836 at 831.353 kb on + strand, within Synpcc7942_0836 at 831.362 kb on - strand, within Synpcc7942_0836 at 831.362 kb on - strand, within Synpcc7942_0836 at 831.423 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.499 kb on - strand, within Synpcc7942_0836 at 831.518 kb on + strand, within Synpcc7942_0836 at 831.620 kb on + strand, within Synpcc7942_0836 at 831.634 kb on + strand, within Synpcc7942_0836 at 831.637 kb on - strand, within Synpcc7942_0836 at 831.637 kb on - strand, within Synpcc7942_0836 at 831.650 kb on - strand, within Synpcc7942_0836 at 831.684 kb on - strand, within Synpcc7942_0836 at 831.691 kb on + strand, within Synpcc7942_0836 at 831.707 kb on - strand, within Synpcc7942_0836 at 831.712 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.726 kb on - strand, within Synpcc7942_0836 at 831.726 kb on - strand, within Synpcc7942_0836 at 831.726 kb on - strand, within Synpcc7942_0836 at 831.728 kb on + strand, within Synpcc7942_0836 at 831.736 kb on - strand, within Synpcc7942_0836 at 831.767 kb on - strand, within Synpcc7942_0836 at 831.771 kb on - strand, within Synpcc7942_0836
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 828,664 + Synpcc7942_0834 0.13 -0.6 828,670 - Synpcc7942_0834 0.13 -1.0 828,682 - Synpcc7942_0834 0.15 +2.0 828,719 + Synpcc7942_0834 0.21 +0.4 828,727 - Synpcc7942_0834 0.22 +1.3 828,741 + Synpcc7942_0834 0.24 -1.4 828,748 + Synpcc7942_0834 0.25 +3.6 828,749 - Synpcc7942_0834 0.26 -2.4 828,761 - Synpcc7942_0834 0.27 +4.2 828,769 + Synpcc7942_0834 0.29 -2.0 828,775 + Synpcc7942_0834 0.30 -1.6 828,783 - Synpcc7942_0834 0.31 -2.0 828,795 - Synpcc7942_0834 0.33 +1.0 828,824 + Synpcc7942_0834 0.37 +1.5 828,833 + Synpcc7942_0834 0.38 -1.4 828,896 + Synpcc7942_0834 0.48 -1.6 828,896 + Synpcc7942_0834 0.48 +3.0 828,904 - Synpcc7942_0834 0.49 -1.8 828,904 - Synpcc7942_0834 0.49 -2.5 828,904 - Synpcc7942_0834 0.49 +0.2 828,928 + Synpcc7942_0834 0.53 -1.2 828,931 + Synpcc7942_0834 0.53 -1.0 828,936 + Synpcc7942_0834 0.54 -0.4 828,949 - Synpcc7942_0834 0.56 +1.0 828,977 - Synpcc7942_0834 0.60 -1.7 828,977 - Synpcc7942_0834 0.60 -1.8 828,985 - Synpcc7942_0834 0.62 -1.0 829,015 - Synpcc7942_0834 0.66 -0.9 829,025 + Synpcc7942_0834 0.68 -0.0 829,031 - Synpcc7942_0834 0.69 -0.3 829,158 + Synpcc7942_0834 0.88 -2.2 829,168 - Synpcc7942_0834 0.90 +1.4 829,197 + +2.2 829,197 + +1.0 829,207 + -0.1 829,207 + +0.9 829,208 + +1.6 829,215 - +2.0 829,284 - -1.4 829,354 + -0.0 829,354 + +2.3 829,375 + +1.0 829,383 - -1.0 829,398 - +2.6 829,428 + +2.0 829,433 + -1.5 829,434 - +1.0 829,434 - -2.2 829,450 + -1.0 829,450 + -1.0 829,450 + -0.6 829,450 + -1.8 829,450 + -3.3 829,450 + +2.5 829,450 + -0.5 829,450 + -0.2 829,458 - -1.4 829,458 - -0.6 829,458 - -0.5 829,458 - -2.6 829,458 - +1.6 829,458 - -1.4 829,458 - -2.2 829,458 - -1.2 829,458 - +1.3 829,458 - +2.9 829,458 - +2.0 829,458 - +1.6 829,458 - +1.0 829,458 - -2.2 829,458 - -0.4 829,458 - +1.6 829,460 + -1.4 829,466 + -1.0 829,472 - -1.4 829,484 + +1.0 829,487 - +2.3 829,570 - +1.0 829,598 + -1.6 829,603 + +0.3 829,611 + -1.6 829,619 - -2.2 829,628 + +1.7 829,634 - +2.4 830,773 - +1.0 830,840 + -2.2 830,850 + +1.3 830,881 + -1.0 830,881 - -4.5 830,888 + +1.3 830,893 + -0.0 830,897 + -0.4 830,901 - +1.4 830,908 - +2.1 830,945 + +1.0 830,986 - -0.0 831,011 + +1.4 831,016 + -2.2 831,029 - -3.5 831,077 + +0.4 831,078 + -1.0 831,093 - +3.0 831,159 + -0.0 831,159 + +1.4 831,159 + -1.0 831,159 + +0.4 831,161 + -0.0 831,167 - -2.3 831,167 - -3.3 831,167 - -2.0 831,177 - -0.0 831,192 + +0.6 831,210 - +2.9 831,214 - -1.8 831,216 + -1.0 831,216 + -1.4 831,216 + -0.0 831,216 + +1.0 831,216 + -1.6 831,216 + -0.4 831,216 + -1.9 831,216 + +1.4 831,216 + -1.4 831,216 + -1.6 831,216 + -1.0 831,216 + -1.0 831,216 + -3.2 831,216 + +0.3 831,216 + +3.3 831,216 + -1.8 831,216 + -2.2 831,216 + +1.0 831,216 + +2.2 831,216 + +0.3 831,216 + -2.6 831,216 + -2.0 831,224 - -3.8 831,224 - +1.5 831,224 - +3.2 831,224 - +0.2 831,224 - +2.3 831,224 - +0.5 831,224 - +0.2 831,224 - +2.8 831,224 - +2.1 831,224 - +1.7 831,224 - -2.8 831,224 - -0.0 831,228 + -1.4 831,246 - -2.4 831,273 - Synpcc7942_0836 0.11 +0.2 831,287 + Synpcc7942_0836 0.12 -0.6 831,289 + Synpcc7942_0836 0.12 -1.4 831,297 - Synpcc7942_0836 0.13 +1.0 831,309 + Synpcc7942_0836 0.14 +1.2 831,312 - Synpcc7942_0836 0.14 -1.4 831,353 + Synpcc7942_0836 0.18 -1.4 831,362 - Synpcc7942_0836 0.19 +1.0 831,362 - Synpcc7942_0836 0.19 +3.2 831,423 - Synpcc7942_0836 0.25 +2.8 831,489 - Synpcc7942_0836 0.32 +0.5 831,489 - Synpcc7942_0836 0.32 +0.2 831,489 - Synpcc7942_0836 0.32 -2.4 831,489 - Synpcc7942_0836 0.32 -0.6 831,489 - Synpcc7942_0836 0.32 -2.0 831,499 - Synpcc7942_0836 0.33 -0.0 831,518 + Synpcc7942_0836 0.35 -0.6 831,620 + Synpcc7942_0836 0.45 +0.4 831,634 + Synpcc7942_0836 0.46 +0.3 831,637 - Synpcc7942_0836 0.46 -2.5 831,637 - Synpcc7942_0836 0.46 -0.5 831,650 - Synpcc7942_0836 0.48 -0.6 831,684 - Synpcc7942_0836 0.51 +1.1 831,691 + Synpcc7942_0836 0.52 -1.6 831,707 - Synpcc7942_0836 0.53 +1.7 831,712 + Synpcc7942_0836 0.54 +3.0 831,718 + Synpcc7942_0836 0.54 +3.0 831,718 + Synpcc7942_0836 0.54 +1.2 831,718 + Synpcc7942_0836 0.54 +0.5 831,718 + Synpcc7942_0836 0.54 +1.0 831,718 + Synpcc7942_0836 0.54 -1.0 831,726 - Synpcc7942_0836 0.55 -2.0 831,726 - Synpcc7942_0836 0.55 -2.2 831,726 - Synpcc7942_0836 0.55 -3.5 831,728 + Synpcc7942_0836 0.55 -1.2 831,736 - Synpcc7942_0836 0.56 -2.5 831,767 - Synpcc7942_0836 0.59 +0.2 831,771 - Synpcc7942_0836 0.59 -2.2
Or see this region's nucleotide sequence