Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0796 and Synpcc7942_0797 are separated by 289 nucleotides Synpcc7942_0797 and ruvC are separated by 48 nucleotides ruvC and Synpcc7942_0799 are separated by 5 nucleotides
Synpcc7942_0796: Synpcc7942_0796 - hypothetical protein, at 791,175 to 791,720
_0796
Synpcc7942_0797: Synpcc7942_0797 - hypothetical protein, at 792,010 to 792,270
_0797
Synpcc7942_0798: ruvC - Holliday junction resolvase, at 792,319 to 792,804
ruvC
Synpcc7942_0799: Synpcc7942_0799 - Elongator protein 3, at 792,810 to 794,390
_0799
Position (kb) 792
793 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 791.747 kb on + strand at 791.755 kb on - strand at 791.822 kb on - strand at 791.933 kb on - strand at 791.933 kb on - strand at 792.023 kb on + strand at 792.036 kb on - strand, within Synpcc7942_0797 at 792.044 kb on + strand, within Synpcc7942_0797 at 792.044 kb on + strand, within Synpcc7942_0797 at 792.044 kb on - strand, within Synpcc7942_0797 at 792.063 kb on - strand, within Synpcc7942_0797 at 792.071 kb on - strand, within Synpcc7942_0797 at 792.083 kb on + strand, within Synpcc7942_0797 at 792.100 kb on + strand, within Synpcc7942_0797 at 792.202 kb on - strand, within Synpcc7942_0797 at 792.205 kb on - strand, within Synpcc7942_0797 at 792.207 kb on - strand, within Synpcc7942_0797 at 792.207 kb on - strand, within Synpcc7942_0797 at 792.240 kb on + strand, within Synpcc7942_0797 at 792.250 kb on + strand at 792.265 kb on + strand at 792.273 kb on - strand at 792.273 kb on - strand at 792.273 kb on - strand at 792.276 kb on + strand at 792.299 kb on - strand at 792.299 kb on - strand at 792.352 kb on - strand at 792.352 kb on - strand at 792.781 kb on + strand at 792.836 kb on + strand at 792.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 791,747 + -1.6 791,755 - -1.0 791,822 - +3.5 791,933 - -1.6 791,933 - +4.8 792,023 + +0.2 792,036 - Synpcc7942_0797 0.10 -1.4 792,044 + Synpcc7942_0797 0.13 +0.4 792,044 + Synpcc7942_0797 0.13 -2.2 792,044 - Synpcc7942_0797 0.13 -0.4 792,063 - Synpcc7942_0797 0.20 +0.2 792,071 - Synpcc7942_0797 0.23 +0.8 792,083 + Synpcc7942_0797 0.28 +3.2 792,100 + Synpcc7942_0797 0.34 -0.6 792,202 - Synpcc7942_0797 0.74 -1.0 792,205 - Synpcc7942_0797 0.75 +2.7 792,207 - Synpcc7942_0797 0.75 -0.4 792,207 - Synpcc7942_0797 0.75 -0.6 792,240 + Synpcc7942_0797 0.88 -1.6 792,250 + +1.0 792,265 + +1.0 792,273 - -1.8 792,273 - -1.0 792,273 - +3.2 792,276 + -0.6 792,299 - -0.5 792,299 - -0.8 792,352 - +2.8 792,352 - -0.6 792,781 + +2.0 792,836 + -0.6 792,841 + -1.6
Or see this region's nucleotide sequence