Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0792

Experiment: A22 0.000341796875 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpcnB and Synpcc7942_0792 are separated by 43 nucleotidesSynpcc7942_0792 and Synpcc7942_0793 are separated by 102 nucleotidesSynpcc7942_0793 and Synpcc7942_0794 are separated by 198 nucleotides Synpcc7942_0791: pcnB - polyA polymerase, at 785,973 to 787,211 pcnB Synpcc7942_0792: Synpcc7942_0792 - putative multidrug efflux MFS transporter, at 787,255 to 788,490 _0792 Synpcc7942_0793: Synpcc7942_0793 - hypothetical protein, at 788,593 to 789,261 _0793 Synpcc7942_0794: Synpcc7942_0794 - membrane-associated 30 kD protein-like, at 789,460 to 790,233 _0794 Position (kb) 787 788 789Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 787.168 kb on + strandat 787.180 kb on + strandat 787.188 kb on - strandat 787.188 kb on - strandat 787.188 kb on - strandat 787.188 kb on - strandat 787.228 kb on + strandat 787.238 kb on + strandat 787.238 kb on + strandat 787.246 kb on - strandat 787.246 kb on - strandat 787.246 kb on - strandat 787.246 kb on - strandat 787.246 kb on - strandat 787.246 kb on - strandat 787.247 kb on - strandat 787.247 kb on - strandat 787.247 kb on - strandat 787.247 kb on - strandat 787.262 kb on - strandat 787.285 kb on - strandat 787.285 kb on - strandat 787.294 kb on - strandat 787.294 kb on - strandat 787.294 kb on - strandat 787.294 kb on - strandat 787.317 kb on - strandat 787.321 kb on + strandat 787.333 kb on + strandat 787.334 kb on + strandat 787.334 kb on - strandat 787.341 kb on - strandat 787.347 kb on - strandat 787.353 kb on - strandat 787.380 kb on + strand, within Synpcc7942_0792at 787.386 kb on - strand, within Synpcc7942_0792at 787.395 kb on + strand, within Synpcc7942_0792at 787.411 kb on - strand, within Synpcc7942_0792at 787.449 kb on + strand, within Synpcc7942_0792at 787.449 kb on + strand, within Synpcc7942_0792at 787.449 kb on + strand, within Synpcc7942_0792at 787.449 kb on + strand, within Synpcc7942_0792at 787.476 kb on - strand, within Synpcc7942_0792at 787.477 kb on - strand, within Synpcc7942_0792at 787.517 kb on + strand, within Synpcc7942_0792at 787.525 kb on - strand, within Synpcc7942_0792at 787.525 kb on - strand, within Synpcc7942_0792at 787.525 kb on - strand, within Synpcc7942_0792at 787.528 kb on + strand, within Synpcc7942_0792at 787.536 kb on - strand, within Synpcc7942_0792at 787.538 kb on + strand, within Synpcc7942_0792at 787.556 kb on + strand, within Synpcc7942_0792at 787.556 kb on + strand, within Synpcc7942_0792at 787.559 kb on - strand, within Synpcc7942_0792at 787.634 kb on - strand, within Synpcc7942_0792at 787.653 kb on - strand, within Synpcc7942_0792at 787.684 kb on - strand, within Synpcc7942_0792at 787.692 kb on + strand, within Synpcc7942_0792at 787.692 kb on + strand, within Synpcc7942_0792at 787.694 kb on + strand, within Synpcc7942_0792at 787.700 kb on - strand, within Synpcc7942_0792at 787.718 kb on + strand, within Synpcc7942_0792at 787.718 kb on + strand, within Synpcc7942_0792at 787.718 kb on + strand, within Synpcc7942_0792at 787.724 kb on + strand, within Synpcc7942_0792at 787.726 kb on - strand, within Synpcc7942_0792at 787.726 kb on - strand, within Synpcc7942_0792at 787.726 kb on - strand, within Synpcc7942_0792at 787.726 kb on - strand, within Synpcc7942_0792at 787.726 kb on - strand, within Synpcc7942_0792at 787.726 kb on - strand, within Synpcc7942_0792at 787.726 kb on - strand, within Synpcc7942_0792at 787.781 kb on + strand, within Synpcc7942_0792at 787.782 kb on - strand, within Synpcc7942_0792at 787.789 kb on - strand, within Synpcc7942_0792at 787.799 kb on - strand, within Synpcc7942_0792at 787.801 kb on + strand, within Synpcc7942_0792at 787.806 kb on + strand, within Synpcc7942_0792at 787.806 kb on + strand, within Synpcc7942_0792at 787.806 kb on + strand, within Synpcc7942_0792at 787.806 kb on + strand, within Synpcc7942_0792at 787.806 kb on + strand, within Synpcc7942_0792at 787.814 kb on - strand, within Synpcc7942_0792at 787.814 kb on - strand, within Synpcc7942_0792at 787.814 kb on - strand, within Synpcc7942_0792at 787.814 kb on - strand, within Synpcc7942_0792at 787.834 kb on + strand, within Synpcc7942_0792at 787.837 kb on - strand, within Synpcc7942_0792at 787.837 kb on - strand, within Synpcc7942_0792at 787.842 kb on - strand, within Synpcc7942_0792at 787.843 kb on - strand, within Synpcc7942_0792at 787.863 kb on + strandat 787.897 kb on + strand, within Synpcc7942_0792at 787.914 kb on + strand, within Synpcc7942_0792at 787.919 kb on + strand, within Synpcc7942_0792at 787.919 kb on + strandat 787.939 kb on + strand, within Synpcc7942_0792at 787.940 kb on - strand, within Synpcc7942_0792at 787.966 kb on + strand, within Synpcc7942_0792at 787.966 kb on + strand, within Synpcc7942_0792at 787.974 kb on - strand, within Synpcc7942_0792at 787.978 kb on + strand, within Synpcc7942_0792at 787.978 kb on + strand, within Synpcc7942_0792at 787.986 kb on - strand, within Synpcc7942_0792at 787.989 kb on - strand, within Synpcc7942_0792at 787.994 kb on + strand, within Synpcc7942_0792at 788.021 kb on + strand, within Synpcc7942_0792at 788.034 kb on - strand, within Synpcc7942_0792at 788.039 kb on - strand, within Synpcc7942_0792at 788.039 kb on - strand, within Synpcc7942_0792at 788.075 kb on + strand, within Synpcc7942_0792at 788.129 kb on - strand, within Synpcc7942_0792at 788.132 kb on + strand, within Synpcc7942_0792at 788.140 kb on - strand, within Synpcc7942_0792at 788.147 kb on + strand, within Synpcc7942_0792at 788.157 kb on + strand, within Synpcc7942_0792at 788.157 kb on - strand, within Synpcc7942_0792at 788.157 kb on - strand, within Synpcc7942_0792at 788.193 kb on - strand, within Synpcc7942_0792at 788.222 kb on - strand, within Synpcc7942_0792at 788.246 kb on - strand, within Synpcc7942_0792at 788.249 kb on + strand, within Synpcc7942_0792at 788.271 kb on + strand, within Synpcc7942_0792at 788.303 kb on + strand, within Synpcc7942_0792at 788.462 kb on - strandat 788.469 kb on + strandat 788.469 kb on + strandat 788.469 kb on + strandat 788.477 kb on + strandat 788.543 kb on + strandat 788.574 kb on - strandat 788.590 kb on + strandat 788.590 kb on + strandat 788.593 kb on - strandat 788.593 kb on - strandat 788.599 kb on - strandat 788.614 kb on + strandat 788.614 kb on + strandat 788.656 kb on - strandat 788.671 kb on - strand, within Synpcc7942_0793at 788.683 kb on + strand, within Synpcc7942_0793at 788.687 kb on + strand, within Synpcc7942_0793at 788.691 kb on - strand, within Synpcc7942_0793at 788.702 kb on + strand, within Synpcc7942_0793at 788.712 kb on - strand, within Synpcc7942_0793at 788.719 kb on + strand, within Synpcc7942_0793at 788.753 kb on + strand, within Synpcc7942_0793at 788.756 kb on - strand, within Synpcc7942_0793at 788.758 kb on + strand, within Synpcc7942_0793at 788.856 kb on - strand, within Synpcc7942_0793at 788.905 kb on - strand, within Synpcc7942_0793at 788.905 kb on - strand, within Synpcc7942_0793at 788.906 kb on - strand, within Synpcc7942_0793at 788.924 kb on - strand, within Synpcc7942_0793at 788.928 kb on + strand, within Synpcc7942_0793at 788.928 kb on + strand, within Synpcc7942_0793at 788.936 kb on - strandat 788.989 kb on + strand, within Synpcc7942_0793at 788.997 kb on + strand, within Synpcc7942_0793at 789.019 kb on + strand, within Synpcc7942_0793at 789.027 kb on - strand, within Synpcc7942_0793at 789.027 kb on - strand, within Synpcc7942_0793at 789.027 kb on - strand, within Synpcc7942_0793at 789.060 kb on + strand, within Synpcc7942_0793at 789.060 kb on + strand, within Synpcc7942_0793at 789.063 kb on - strand, within Synpcc7942_0793at 789.068 kb on - strand, within Synpcc7942_0793at 789.068 kb on - strand, within Synpcc7942_0793at 789.068 kb on - strand, within Synpcc7942_0793at 789.068 kb on - strand, within Synpcc7942_0793at 789.070 kb on + strand, within Synpcc7942_0793at 789.080 kb on - strand, within Synpcc7942_0793at 789.089 kb on + strand, within Synpcc7942_0793at 789.100 kb on + strand, within Synpcc7942_0793at 789.101 kb on + strand, within Synpcc7942_0793at 789.123 kb on + strand, within Synpcc7942_0793at 789.131 kb on - strand, within Synpcc7942_0793at 789.135 kb on + strand, within Synpcc7942_0793at 789.144 kb on + strand, within Synpcc7942_0793at 789.162 kb on - strand, within Synpcc7942_0793at 789.189 kb on + strand, within Synpcc7942_0793at 789.219 kb on + strandat 789.250 kb on + strandat 789.285 kb on + strandat 789.291 kb on + strandat 789.322 kb on + strandat 789.330 kb on - strandat 789.335 kb on - strandat 789.457 kb on + strandat 789.457 kb on + strandat 789.457 kb on + strandat 789.465 kb on - strandat 789.465 kb on - strandat 789.465 kb on - strandat 789.465 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml
remove
787,168 + +2.7
787,180 + -2.4
787,188 - -1.4
787,188 - -1.8
787,188 - -2.4
787,188 - +0.4
787,228 + -1.3
787,238 + -1.6
787,238 + -0.4
787,246 - +1.0
787,246 - -1.0
787,246 - +1.0
787,246 - +1.0
787,246 - +3.1
787,246 - +0.3
787,247 - +1.5
787,247 - -3.3
787,247 - -1.4
787,247 - -0.4
787,262 - +1.0
787,285 - -2.9
787,285 - -2.0
787,294 - +2.5
787,294 - +2.3
787,294 - -0.4
787,294 - +0.5
787,317 - -1.6
787,321 + -2.9
787,333 + +3.0
787,334 + +2.0
787,334 - +3.6
787,341 - -1.7
787,347 - +2.9
787,353 - +2.5
787,380 + Synpcc7942_0792 0.10 +1.0
787,386 - Synpcc7942_0792 0.11 +1.0
787,395 + Synpcc7942_0792 0.11 -1.8
787,411 - Synpcc7942_0792 0.13 +1.8
787,449 + Synpcc7942_0792 0.16 -0.4
787,449 + Synpcc7942_0792 0.16 -0.6
787,449 + Synpcc7942_0792 0.16 -0.0
787,449 + Synpcc7942_0792 0.16 -0.6
787,476 - Synpcc7942_0792 0.18 +0.8
787,477 - Synpcc7942_0792 0.18 +1.5
787,517 + Synpcc7942_0792 0.21 +0.2
787,525 - Synpcc7942_0792 0.22 -0.8
787,525 - Synpcc7942_0792 0.22 -1.0
787,525 - Synpcc7942_0792 0.22 +0.7
787,528 + Synpcc7942_0792 0.22 -1.0
787,536 - Synpcc7942_0792 0.23 -2.2
787,538 + Synpcc7942_0792 0.23 -1.8
787,556 + Synpcc7942_0792 0.24 -0.0
787,556 + Synpcc7942_0792 0.24 -1.0
787,559 - Synpcc7942_0792 0.25 +2.0
787,634 - Synpcc7942_0792 0.31 -1.4
787,653 - Synpcc7942_0792 0.32 -0.6
787,684 - Synpcc7942_0792 0.35 -1.6
787,692 + Synpcc7942_0792 0.35 -0.0
787,692 + Synpcc7942_0792 0.35 -1.0
787,694 + Synpcc7942_0792 0.36 -2.6
787,700 - Synpcc7942_0792 0.36 +0.4
787,718 + Synpcc7942_0792 0.37 +2.6
787,718 + Synpcc7942_0792 0.37 +2.0
787,718 + Synpcc7942_0792 0.37 -0.6
787,724 + Synpcc7942_0792 0.38 +1.8
787,726 - Synpcc7942_0792 0.38 -1.6
787,726 - Synpcc7942_0792 0.38 +1.0
787,726 - Synpcc7942_0792 0.38 -0.6
787,726 - Synpcc7942_0792 0.38 -1.4
787,726 - Synpcc7942_0792 0.38 -0.6
787,726 - Synpcc7942_0792 0.38 +2.0
787,726 - Synpcc7942_0792 0.38 -0.0
787,781 + Synpcc7942_0792 0.43 +2.3
787,782 - Synpcc7942_0792 0.43 -2.0
787,789 - Synpcc7942_0792 0.43 -1.4
787,799 - Synpcc7942_0792 0.44 +0.3
787,801 + Synpcc7942_0792 0.44 -0.0
787,806 + Synpcc7942_0792 0.45 +5.1
787,806 + Synpcc7942_0792 0.45 -3.9
787,806 + Synpcc7942_0792 0.45 -2.9
787,806 + Synpcc7942_0792 0.45 +1.0
787,806 + Synpcc7942_0792 0.45 -0.0
787,814 - Synpcc7942_0792 0.45 +5.1
787,814 - Synpcc7942_0792 0.45 -0.6
787,814 - Synpcc7942_0792 0.45 -0.0
787,814 - Synpcc7942_0792 0.45 -2.2
787,834 + Synpcc7942_0792 0.47 +2.1
787,837 - Synpcc7942_0792 0.47 -4.7
787,837 - Synpcc7942_0792 0.47 -2.4
787,842 - Synpcc7942_0792 0.47 +0.7
787,843 - Synpcc7942_0792 0.48 -2.2
787,863 + -0.0
787,897 + Synpcc7942_0792 0.52 -1.6
787,914 + Synpcc7942_0792 0.53 -0.8
787,919 + Synpcc7942_0792 0.54 -1.0
787,919 + +1.0
787,939 + Synpcc7942_0792 0.55 +4.5
787,940 - Synpcc7942_0792 0.55 +2.1
787,966 + Synpcc7942_0792 0.58 -2.7
787,966 + Synpcc7942_0792 0.58 +0.1
787,974 - Synpcc7942_0792 0.58 +0.4
787,978 + Synpcc7942_0792 0.58 +0.4
787,978 + Synpcc7942_0792 0.58 +1.0
787,986 - Synpcc7942_0792 0.59 -2.0
787,989 - Synpcc7942_0792 0.59 -1.6
787,994 + Synpcc7942_0792 0.60 -2.5
788,021 + Synpcc7942_0792 0.62 -0.6
788,034 - Synpcc7942_0792 0.63 +0.1
788,039 - Synpcc7942_0792 0.63 +3.4
788,039 - Synpcc7942_0792 0.63 -3.1
788,075 + Synpcc7942_0792 0.66 -0.6
788,129 - Synpcc7942_0792 0.71 +1.0
788,132 + Synpcc7942_0792 0.71 +2.0
788,140 - Synpcc7942_0792 0.72 +1.9
788,147 + Synpcc7942_0792 0.72 +1.0
788,157 + Synpcc7942_0792 0.73 -1.8
788,157 - Synpcc7942_0792 0.73 +1.0
788,157 - Synpcc7942_0792 0.73 -1.4
788,193 - Synpcc7942_0792 0.76 -1.4
788,222 - Synpcc7942_0792 0.78 -1.8
788,246 - Synpcc7942_0792 0.80 -0.6
788,249 + Synpcc7942_0792 0.80 -0.0
788,271 + Synpcc7942_0792 0.82 -2.2
788,303 + Synpcc7942_0792 0.85 -0.4
788,462 - +1.9
788,469 + -2.0
788,469 + -1.4
788,469 + +2.6
788,477 + -1.0
788,543 + +1.0
788,574 - -0.6
788,590 + -2.4
788,590 + +3.1
788,593 - -0.6
788,593 - +3.5
788,599 - -1.2
788,614 + -1.9
788,614 + -2.2
788,656 - -0.6
788,671 - Synpcc7942_0793 0.12 -1.6
788,683 + Synpcc7942_0793 0.13 +0.9
788,687 + Synpcc7942_0793 0.14 -2.4
788,691 - Synpcc7942_0793 0.15 -2.0
788,702 + Synpcc7942_0793 0.16 -0.6
788,712 - Synpcc7942_0793 0.18 -2.0
788,719 + Synpcc7942_0793 0.19 -0.6
788,753 + Synpcc7942_0793 0.24 +1.0
788,756 - Synpcc7942_0793 0.24 -1.0
788,758 + Synpcc7942_0793 0.25 +3.5
788,856 - Synpcc7942_0793 0.39 +3.7
788,905 - Synpcc7942_0793 0.47 -1.0
788,905 - Synpcc7942_0793 0.47 +1.0
788,906 - Synpcc7942_0793 0.47 -0.4
788,924 - Synpcc7942_0793 0.49 +0.9
788,928 + Synpcc7942_0793 0.50 -1.4
788,928 + Synpcc7942_0793 0.50 -0.0
788,936 - -1.0
788,989 + Synpcc7942_0793 0.59 -1.3
788,997 + Synpcc7942_0793 0.60 -1.4
789,019 + Synpcc7942_0793 0.64 +0.4
789,027 - Synpcc7942_0793 0.65 -0.4
789,027 - Synpcc7942_0793 0.65 +0.8
789,027 - Synpcc7942_0793 0.65 +2.8
789,060 + Synpcc7942_0793 0.70 +1.6
789,060 + Synpcc7942_0793 0.70 -4.1
789,063 - Synpcc7942_0793 0.70 -1.7
789,068 - Synpcc7942_0793 0.71 -2.0
789,068 - Synpcc7942_0793 0.71 +2.0
789,068 - Synpcc7942_0793 0.71 -1.6
789,068 - Synpcc7942_0793 0.71 -3.2
789,070 + Synpcc7942_0793 0.71 +3.1
789,080 - Synpcc7942_0793 0.73 +0.9
789,089 + Synpcc7942_0793 0.74 -0.6
789,100 + Synpcc7942_0793 0.76 -3.6
789,101 + Synpcc7942_0793 0.76 -1.2
789,123 + Synpcc7942_0793 0.79 +0.4
789,131 - Synpcc7942_0793 0.80 +1.0
789,135 + Synpcc7942_0793 0.81 +2.8
789,144 + Synpcc7942_0793 0.82 +2.0
789,162 - Synpcc7942_0793 0.85 +4.3
789,189 + Synpcc7942_0793 0.89 +1.6
789,219 + +0.3
789,250 + +1.2
789,285 + -1.0
789,291 + -2.1
789,322 + -0.0
789,330 - +1.8
789,335 - -0.6
789,457 + -0.0
789,457 + +1.0
789,457 + +2.3
789,465 - -4.7
789,465 - +3.3
789,465 - +2.0
789,465 - -0.0

Or see this region's nucleotide sequence