Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ponA and Synpcc7942_0786 are separated by 156 nucleotides Synpcc7942_0786 and phoA are separated by 64 nucleotides
Synpcc7942_0785: ponA - Penicillin-binding protein 1A, at 779,781 to 781,919
ponA
Synpcc7942_0786: Synpcc7942_0786 - hypothetical protein, at 782,076 to 782,942
_0786
Synpcc7942_0787: phoA - putative purple acid phosphatase, at 783,007 to 783,885
phoA
Position (kb) 782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 781.079 kb on + strand, within ponA at 781.079 kb on + strand, within ponA at 781.085 kb on - strand, within ponA at 781.085 kb on - strand, within ponA at 781.101 kb on - strand, within ponA at 781.105 kb on - strand, within ponA at 781.168 kb on + strand at 781.168 kb on + strand, within ponA at 781.173 kb on + strand, within ponA at 781.193 kb on + strand, within ponA at 781.193 kb on + strand, within ponA at 781.193 kb on + strand, within ponA at 781.193 kb on + strand, within ponA at 781.198 kb on + strand, within ponA at 781.198 kb on + strand, within ponA at 781.201 kb on - strand, within ponA at 781.203 kb on + strand, within ponA at 781.211 kb on - strand, within ponA at 781.227 kb on + strand, within ponA at 781.230 kb on - strand, within ponA at 781.264 kb on + strand, within ponA at 781.267 kb on + strand, within ponA at 781.275 kb on - strand, within ponA at 781.424 kb on - strand, within ponA at 781.429 kb on + strand, within ponA at 781.437 kb on - strand, within ponA at 781.453 kb on + strand, within ponA at 781.532 kb on + strand, within ponA at 781.532 kb on + strand, within ponA at 781.552 kb on - strand, within ponA at 781.561 kb on + strand, within ponA at 781.562 kb on + strand, within ponA at 781.568 kb on - strand, within ponA at 781.568 kb on - strand, within ponA at 781.569 kb on - strand, within ponA at 781.584 kb on - strand, within ponA at 781.585 kb on - strand, within ponA at 781.598 kb on - strand, within ponA at 781.604 kb on - strand, within ponA at 781.608 kb on + strand, within ponA at 781.608 kb on + strand, within ponA at 781.616 kb on - strand, within ponA at 781.617 kb on - strand, within ponA at 781.635 kb on - strand, within ponA at 781.672 kb on - strand, within ponA at 781.714 kb on - strand at 781.754 kb on + strand at 781.760 kb on - strand at 781.787 kb on + strand at 781.795 kb on - strand at 781.804 kb on - strand at 781.824 kb on - strand at 781.842 kb on + strand at 781.852 kb on - strand at 781.858 kb on - strand at 781.865 kb on - strand at 781.874 kb on + strand at 781.887 kb on - strand at 781.887 kb on - strand at 781.897 kb on - strand at 781.922 kb on - strand at 781.995 kb on - strand at 782.002 kb on + strand at 782.002 kb on - strand at 782.002 kb on - strand at 782.027 kb on - strand at 782.027 kb on - strand at 782.027 kb on - strand at 782.027 kb on - strand at 782.036 kb on + strand at 782.036 kb on + strand at 782.041 kb on + strand at 782.041 kb on + strand at 782.041 kb on + strand at 782.044 kb on - strand at 782.049 kb on - strand at 782.059 kb on - strand at 782.084 kb on + strand at 782.094 kb on + strand at 782.094 kb on + strand at 782.112 kb on - strand at 782.112 kb on - strand at 782.140 kb on - strand at 782.166 kb on + strand, within Synpcc7942_0786 at 782.166 kb on + strand, within Synpcc7942_0786 at 782.174 kb on - strand, within Synpcc7942_0786 at 782.174 kb on - strand, within Synpcc7942_0786 at 782.212 kb on + strand, within Synpcc7942_0786 at 782.217 kb on + strand, within Synpcc7942_0786 at 782.242 kb on - strand, within Synpcc7942_0786 at 782.244 kb on - strand, within Synpcc7942_0786 at 782.252 kb on - strand, within Synpcc7942_0786 at 782.256 kb on + strand, within Synpcc7942_0786 at 782.271 kb on + strand, within Synpcc7942_0786 at 782.298 kb on + strand, within Synpcc7942_0786 at 782.305 kb on + strand, within Synpcc7942_0786 at 782.311 kb on - strand, within Synpcc7942_0786 at 782.313 kb on - strand, within Synpcc7942_0786 at 782.333 kb on + strand, within Synpcc7942_0786 at 782.364 kb on - strand, within Synpcc7942_0786 at 782.387 kb on - strand, within Synpcc7942_0786 at 782.387 kb on - strand, within Synpcc7942_0786 at 782.406 kb on - strand, within Synpcc7942_0786 at 782.433 kb on - strand, within Synpcc7942_0786 at 782.433 kb on - strand, within Synpcc7942_0786 at 782.433 kb on - strand, within Synpcc7942_0786 at 782.434 kb on + strand, within Synpcc7942_0786 at 782.602 kb on - strand, within Synpcc7942_0786 at 782.605 kb on + strand, within Synpcc7942_0786 at 782.618 kb on + strand, within Synpcc7942_0786 at 782.706 kb on + strand, within Synpcc7942_0786 at 782.792 kb on + strand, within Synpcc7942_0786 at 782.800 kb on - strand, within Synpcc7942_0786 at 782.800 kb on - strand, within Synpcc7942_0786 at 782.813 kb on + strand, within Synpcc7942_0786 at 782.837 kb on + strand, within Synpcc7942_0786 at 782.852 kb on + strand, within Synpcc7942_0786 at 782.852 kb on + strand, within Synpcc7942_0786 at 782.941 kb on + strand at 782.979 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.022 kb on + strand at 783.042 kb on + strand at 783.042 kb on + strand at 783.042 kb on + strand at 783.078 kb on - strand at 783.082 kb on - strand at 783.091 kb on + strand at 783.097 kb on - strand, within phoA at 783.105 kb on - strand, within phoA at 783.134 kb on - strand, within phoA at 783.162 kb on + strand, within phoA at 783.178 kb on + strand, within phoA at 783.227 kb on + strand, within phoA at 783.267 kb on - strand, within phoA at 783.285 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.308 kb on + strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.315 kb on - strand, within phoA at 783.324 kb on + strand, within phoA at 783.349 kb on + strand at 783.357 kb on - strand, within phoA at 783.357 kb on - strand, within phoA at 783.388 kb on + strand, within phoA at 783.419 kb on - strand, within phoA at 783.428 kb on + strand at 783.466 kb on - strand, within phoA at 783.504 kb on + strand, within phoA at 783.523 kb on + strand at 783.523 kb on + strand, within phoA at 783.533 kb on + strand, within phoA at 783.533 kb on + strand, within phoA at 783.573 kb on - strand, within phoA at 783.607 kb on - strand, within phoA at 783.630 kb on + strand, within phoA at 783.638 kb on - strand, within phoA at 783.638 kb on - strand, within phoA at 783.638 kb on - strand, within phoA at 783.644 kb on + strand, within phoA at 783.644 kb on - strand, within phoA at 783.644 kb on - strand, within phoA at 783.652 kb on - strand, within phoA at 783.660 kb on - strand, within phoA at 783.685 kb on - strand, within phoA at 783.685 kb on - strand, within phoA at 783.709 kb on + strand, within phoA at 783.759 kb on + strand at 783.759 kb on + strand, within phoA at 783.767 kb on - strand, within phoA at 783.767 kb on - strand, within phoA at 783.777 kb on - strand at 783.784 kb on + strand, within phoA at 783.789 kb on + strand, within phoA at 783.792 kb on - strand, within phoA at 783.808 kb on + strand at 783.810 kb on + strand at 783.816 kb on - strand at 783.841 kb on + strand at 783.865 kb on - strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.893 kb on - strand at 783.893 kb on - strand at 783.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 781,079 + ponA Synpcc7942_0785 0.61 -2.2 781,079 + ponA Synpcc7942_0785 0.61 -2.9 781,085 - ponA Synpcc7942_0785 0.61 -1.6 781,085 - ponA Synpcc7942_0785 0.61 -1.6 781,101 - ponA Synpcc7942_0785 0.62 -1.0 781,105 - ponA Synpcc7942_0785 0.62 -1.9 781,168 + -0.0 781,168 + ponA Synpcc7942_0785 0.65 -1.4 781,173 + ponA Synpcc7942_0785 0.65 +3.0 781,193 + ponA Synpcc7942_0785 0.66 -0.0 781,193 + ponA Synpcc7942_0785 0.66 +0.5 781,193 + ponA Synpcc7942_0785 0.66 -3.1 781,193 + ponA Synpcc7942_0785 0.66 -0.0 781,198 + ponA Synpcc7942_0785 0.66 -0.6 781,198 + ponA Synpcc7942_0785 0.66 +0.2 781,201 - ponA Synpcc7942_0785 0.66 -2.2 781,203 + ponA Synpcc7942_0785 0.66 -0.6 781,211 - ponA Synpcc7942_0785 0.67 -2.9 781,227 + ponA Synpcc7942_0785 0.68 +2.4 781,230 - ponA Synpcc7942_0785 0.68 +2.4 781,264 + ponA Synpcc7942_0785 0.69 -1.6 781,267 + ponA Synpcc7942_0785 0.69 -0.2 781,275 - ponA Synpcc7942_0785 0.70 -0.0 781,424 - ponA Synpcc7942_0785 0.77 -1.0 781,429 + ponA Synpcc7942_0785 0.77 +2.2 781,437 - ponA Synpcc7942_0785 0.77 -1.4 781,453 + ponA Synpcc7942_0785 0.78 +3.6 781,532 + ponA Synpcc7942_0785 0.82 -2.2 781,532 + ponA Synpcc7942_0785 0.82 -0.0 781,552 - ponA Synpcc7942_0785 0.83 -1.5 781,561 + ponA Synpcc7942_0785 0.83 +0.6 781,562 + ponA Synpcc7942_0785 0.83 +3.0 781,568 - ponA Synpcc7942_0785 0.84 +2.5 781,568 - ponA Synpcc7942_0785 0.84 +2.0 781,569 - ponA Synpcc7942_0785 0.84 -1.9 781,584 - ponA Synpcc7942_0785 0.84 -1.0 781,585 - ponA Synpcc7942_0785 0.84 -1.7 781,598 - ponA Synpcc7942_0785 0.85 -1.4 781,604 - ponA Synpcc7942_0785 0.85 +0.7 781,608 + ponA Synpcc7942_0785 0.85 +1.8 781,608 + ponA Synpcc7942_0785 0.85 -1.9 781,616 - ponA Synpcc7942_0785 0.86 +1.9 781,617 - ponA Synpcc7942_0785 0.86 -2.6 781,635 - ponA Synpcc7942_0785 0.87 +0.4 781,672 - ponA Synpcc7942_0785 0.88 +0.7 781,714 - -1.0 781,754 + +1.8 781,760 - -3.0 781,787 + +1.4 781,795 - +2.8 781,804 - -3.0 781,824 - +2.5 781,842 + -2.7 781,852 - -2.4 781,858 - +1.0 781,865 - -1.2 781,874 + -1.1 781,887 - -2.0 781,887 - -1.4 781,897 - -1.2 781,922 - -1.4 781,995 - +0.4 782,002 + +1.1 782,002 - +1.0 782,002 - -1.5 782,027 - -2.9 782,027 - -1.4 782,027 - -0.5 782,027 - +1.8 782,036 + -0.0 782,036 + -0.0 782,041 + -1.4 782,041 + -1.0 782,041 + +0.1 782,044 - +1.6 782,049 - +1.9 782,059 - +1.0 782,084 + +3.9 782,094 + +2.2 782,094 + -0.6 782,112 - +1.0 782,112 - +1.0 782,140 - +1.0 782,166 + Synpcc7942_0786 0.10 +5.3 782,166 + Synpcc7942_0786 0.10 -1.0 782,174 - Synpcc7942_0786 0.11 +1.0 782,174 - Synpcc7942_0786 0.11 -1.4 782,212 + Synpcc7942_0786 0.16 -1.4 782,217 + Synpcc7942_0786 0.16 +2.3 782,242 - Synpcc7942_0786 0.19 -1.6 782,244 - Synpcc7942_0786 0.19 -0.7 782,252 - Synpcc7942_0786 0.20 +0.4 782,256 + Synpcc7942_0786 0.21 +2.0 782,271 + Synpcc7942_0786 0.22 -1.0 782,298 + Synpcc7942_0786 0.26 +4.7 782,305 + Synpcc7942_0786 0.26 -0.0 782,311 - Synpcc7942_0786 0.27 -0.7 782,313 - Synpcc7942_0786 0.27 -1.0 782,333 + Synpcc7942_0786 0.30 -1.0 782,364 - Synpcc7942_0786 0.33 -1.6 782,387 - Synpcc7942_0786 0.36 -2.6 782,387 - Synpcc7942_0786 0.36 +0.8 782,406 - Synpcc7942_0786 0.38 +1.6 782,433 - Synpcc7942_0786 0.41 +0.9 782,433 - Synpcc7942_0786 0.41 +1.0 782,433 - Synpcc7942_0786 0.41 -1.6 782,434 + Synpcc7942_0786 0.41 +1.0 782,602 - Synpcc7942_0786 0.61 -0.6 782,605 + Synpcc7942_0786 0.61 -0.6 782,618 + Synpcc7942_0786 0.63 -1.6 782,706 + Synpcc7942_0786 0.73 -1.0 782,792 + Synpcc7942_0786 0.83 -0.4 782,800 - Synpcc7942_0786 0.84 -1.0 782,800 - Synpcc7942_0786 0.84 -1.0 782,813 + Synpcc7942_0786 0.85 -1.8 782,837 + Synpcc7942_0786 0.88 -1.0 782,852 + Synpcc7942_0786 0.90 +2.0 782,852 + Synpcc7942_0786 0.90 +3.4 782,941 + -0.6 782,979 + +2.0 782,997 + -0.0 782,997 + -1.6 782,997 + +1.0 782,997 + -0.0 783,005 - +0.4 783,005 - -0.8 783,005 - +1.0 783,005 - +1.0 783,022 + +2.0 783,042 + +2.0 783,042 + +0.5 783,042 + +2.9 783,078 - -2.6 783,082 - +3.5 783,091 + -0.0 783,097 - phoA Synpcc7942_0787 0.10 +1.0 783,105 - phoA Synpcc7942_0787 0.11 -2.2 783,134 - phoA Synpcc7942_0787 0.14 -2.0 783,162 + phoA Synpcc7942_0787 0.18 -1.2 783,178 + phoA Synpcc7942_0787 0.19 +2.0 783,227 + phoA Synpcc7942_0787 0.25 -1.0 783,267 - phoA Synpcc7942_0787 0.30 -1.0 783,285 + phoA Synpcc7942_0787 0.32 -1.6 783,306 + phoA Synpcc7942_0787 0.34 -0.6 783,306 + phoA Synpcc7942_0787 0.34 +1.5 783,306 + phoA Synpcc7942_0787 0.34 +1.0 783,306 + phoA Synpcc7942_0787 0.34 +1.4 783,306 + phoA Synpcc7942_0787 0.34 -2.2 783,306 + phoA Synpcc7942_0787 0.34 -1.2 783,306 + phoA Synpcc7942_0787 0.34 +1.3 783,306 + phoA Synpcc7942_0787 0.34 +2.5 783,306 + phoA Synpcc7942_0787 0.34 -0.8 783,306 + phoA Synpcc7942_0787 0.34 +1.9 783,306 + phoA Synpcc7942_0787 0.34 +0.6 783,306 + phoA Synpcc7942_0787 0.34 +0.3 783,308 + phoA Synpcc7942_0787 0.34 -1.6 783,314 - phoA Synpcc7942_0787 0.35 +1.0 783,314 - phoA Synpcc7942_0787 0.35 -1.3 783,314 - phoA Synpcc7942_0787 0.35 +1.0 783,314 - phoA Synpcc7942_0787 0.35 +2.3 783,314 - phoA Synpcc7942_0787 0.35 +0.2 783,314 - phoA Synpcc7942_0787 0.35 +1.3 783,314 - phoA Synpcc7942_0787 0.35 +1.0 783,314 - phoA Synpcc7942_0787 0.35 +1.1 783,315 - phoA Synpcc7942_0787 0.35 +1.0 783,324 + phoA Synpcc7942_0787 0.36 +1.0 783,349 + +2.4 783,357 - phoA Synpcc7942_0787 0.40 -0.0 783,357 - phoA Synpcc7942_0787 0.40 +1.0 783,388 + phoA Synpcc7942_0787 0.43 -1.6 783,419 - phoA Synpcc7942_0787 0.47 +1.6 783,428 + +1.0 783,466 - phoA Synpcc7942_0787 0.52 +1.0 783,504 + phoA Synpcc7942_0787 0.57 -0.0 783,523 + -0.0 783,523 + phoA Synpcc7942_0787 0.59 -2.4 783,533 + phoA Synpcc7942_0787 0.60 +3.1 783,533 + phoA Synpcc7942_0787 0.60 -0.6 783,573 - phoA Synpcc7942_0787 0.64 +1.3 783,607 - phoA Synpcc7942_0787 0.68 +1.5 783,630 + phoA Synpcc7942_0787 0.71 +2.0 783,638 - phoA Synpcc7942_0787 0.72 +1.0 783,638 - phoA Synpcc7942_0787 0.72 +2.1 783,638 - phoA Synpcc7942_0787 0.72 -0.0 783,644 + phoA Synpcc7942_0787 0.72 +0.1 783,644 - phoA Synpcc7942_0787 0.72 -2.4 783,644 - phoA Synpcc7942_0787 0.72 -0.7 783,652 - phoA Synpcc7942_0787 0.73 -2.4 783,660 - phoA Synpcc7942_0787 0.74 -0.6 783,685 - phoA Synpcc7942_0787 0.77 +2.9 783,685 - phoA Synpcc7942_0787 0.77 -2.0 783,709 + phoA Synpcc7942_0787 0.80 +1.3 783,759 + -0.6 783,759 + phoA Synpcc7942_0787 0.86 +2.0 783,767 - phoA Synpcc7942_0787 0.86 -2.1 783,767 - phoA Synpcc7942_0787 0.86 +1.4 783,777 - +1.0 783,784 + phoA Synpcc7942_0787 0.88 +1.0 783,789 + phoA Synpcc7942_0787 0.89 +2.0 783,792 - phoA Synpcc7942_0787 0.89 -1.6 783,808 + +1.6 783,810 + -1.1 783,816 - -0.2 783,841 + +4.9 783,865 - +0.7 783,885 + -1.2 783,885 + +1.0 783,885 + -0.6 783,885 + -0.8 783,893 - -1.6 783,893 - -0.6 783,926 - +2.3
Or see this region's nucleotide sequence