Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0779 and Synpcc7942_0780 overlap by 9 nucleotides Synpcc7942_0780 and ppsA are separated by 45 nucleotides
Synpcc7942_0779: Synpcc7942_0779 - metal dependent phosphohydrolase, at 770,131 to 772,593
_0779
Synpcc7942_0780: Synpcc7942_0780 - serine/threonine protein kinase, at 772,585 to 773,958
_0780
Synpcc7942_0781: ppsA - phosphoenolpyruvate synthase, at 774,004 to 776,520
ppsA
Position (kb) 772
773
774 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 772.439 kb on - strand at 772.489 kb on + strand at 772.567 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.572 kb on + strand at 772.638 kb on + strand at 772.696 kb on + strand at 772.696 kb on + strand at 772.697 kb on + strand at 772.705 kb on - strand at 772.748 kb on + strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.807 kb on - strand, within Synpcc7942_0780 at 772.854 kb on - strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 772.996 kb on + strand, within Synpcc7942_0780 at 773.047 kb on - strand, within Synpcc7942_0780 at 773.087 kb on + strand, within Synpcc7942_0780 at 773.095 kb on + strand, within Synpcc7942_0780 at 773.103 kb on - strand at 773.103 kb on - strand, within Synpcc7942_0780 at 773.136 kb on + strand, within Synpcc7942_0780 at 773.144 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.160 kb on - strand, within Synpcc7942_0780 at 773.191 kb on + strand, within Synpcc7942_0780 at 773.230 kb on + strand, within Synpcc7942_0780 at 773.268 kb on + strand, within Synpcc7942_0780 at 773.276 kb on - strand, within Synpcc7942_0780 at 773.298 kb on - strand, within Synpcc7942_0780 at 773.337 kb on + strand, within Synpcc7942_0780 at 773.340 kb on - strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.351 kb on + strand, within Synpcc7942_0780 at 773.357 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.359 kb on - strand, within Synpcc7942_0780 at 773.372 kb on - strand, within Synpcc7942_0780 at 773.380 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.382 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.388 kb on - strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.402 kb on + strand, within Synpcc7942_0780 at 773.410 kb on - strand, within Synpcc7942_0780 at 773.415 kb on - strand, within Synpcc7942_0780 at 773.431 kb on - strand, within Synpcc7942_0780 at 773.432 kb on - strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.458 kb on + strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.466 kb on - strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.483 kb on + strand, within Synpcc7942_0780 at 773.491 kb on - strand at 773.491 kb on - strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.550 kb on + strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.558 kb on - strand, within Synpcc7942_0780 at 773.586 kb on - strand, within Synpcc7942_0780 at 773.592 kb on - strand, within Synpcc7942_0780 at 773.596 kb on + strand, within Synpcc7942_0780 at 773.599 kb on + strand, within Synpcc7942_0780 at 773.599 kb on - strand, within Synpcc7942_0780 at 773.607 kb on + strand, within Synpcc7942_0780 at 773.615 kb on - strand, within Synpcc7942_0780 at 773.668 kb on - strand, within Synpcc7942_0780 at 773.684 kb on - strand, within Synpcc7942_0780 at 773.686 kb on + strand, within Synpcc7942_0780 at 773.704 kb on + strand, within Synpcc7942_0780 at 773.709 kb on - strand, within Synpcc7942_0780 at 773.711 kb on + strand, within Synpcc7942_0780 at 773.757 kb on - strand, within Synpcc7942_0780 at 773.851 kb on + strand at 773.875 kb on + strand at 773.880 kb on + strand at 773.893 kb on - strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.895 kb on + strand at 773.898 kb on + strand at 773.903 kb on - strand at 773.908 kb on + strand at 773.926 kb on + strand at 773.926 kb on + strand at 773.959 kb on - strand at 773.959 kb on - strand at 773.961 kb on - strand at 773.982 kb on + strand at 773.982 kb on + strand at 773.982 kb on + strand at 773.990 kb on - strand at 773.990 kb on - strand at 773.994 kb on + strand at 774.000 kb on - strand at 774.002 kb on - strand at 774.010 kb on - strand at 774.010 kb on - strand at 774.015 kb on - strand at 774.017 kb on + strand at 774.025 kb on - strand at 774.025 kb on - strand at 774.044 kb on + strand at 774.082 kb on - strand at 774.082 kb on - strand at 774.093 kb on - strand at 774.184 kb on - strand at 774.185 kb on - strand at 774.235 kb on + strand at 774.267 kb on - strand, within ppsA at 774.291 kb on + strand, within ppsA at 774.294 kb on - strand, within ppsA at 774.299 kb on - strand, within ppsA at 774.315 kb on + strand, within ppsA at 774.336 kb on + strand, within ppsA at 774.336 kb on - strand, within ppsA at 774.344 kb on - strand, within ppsA at 774.346 kb on + strand, within ppsA at 774.353 kb on + strand, within ppsA at 774.354 kb on - strand, within ppsA at 774.361 kb on - strand, within ppsA at 774.363 kb on + strand, within ppsA at 774.363 kb on - strand, within ppsA at 774.371 kb on - strand, within ppsA at 774.374 kb on + strand, within ppsA at 774.378 kb on - strand, within ppsA at 774.382 kb on - strand, within ppsA at 774.425 kb on + strand, within ppsA at 774.445 kb on + strand, within ppsA at 774.463 kb on - strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.482 kb on + strand, within ppsA at 774.485 kb on - strand, within ppsA at 774.489 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.490 kb on - strand, within ppsA at 774.492 kb on + strand, within ppsA at 774.495 kb on - strand, within ppsA at 774.512 kb on + strand, within ppsA at 774.543 kb on + strand, within ppsA at 774.543 kb on - strand, within ppsA at 774.558 kb on + strand, within ppsA at 774.566 kb on - strand at 774.566 kb on - strand, within ppsA at 774.620 kb on - strand, within ppsA at 774.723 kb on + strand, within ppsA at 774.731 kb on - strand, within ppsA at 774.813 kb on + strand, within ppsA at 774.821 kb on - strand, within ppsA at 774.872 kb on + strand, within ppsA at 774.875 kb on - strand, within ppsA at 774.890 kb on - strand, within ppsA at 774.890 kb on - strand, within ppsA at 774.912 kb on + strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.920 kb on - strand, within ppsA at 774.921 kb on - strand, within ppsA at 774.954 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on + strand, within ppsA at 774.956 kb on - strand, within ppsA at 774.956 kb on - strand, within ppsA
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 772,439 - -2.4 772,489 + +1.0 772,567 + -1.8 772,572 + +1.5 772,572 + +1.7 772,572 + -2.0 772,638 + -0.0 772,696 + +1.0 772,696 + +3.0 772,697 + -1.0 772,705 - +3.4 772,748 + Synpcc7942_0780 0.12 -0.9 772,807 - Synpcc7942_0780 0.16 +1.5 772,807 - Synpcc7942_0780 0.16 -0.0 772,854 - Synpcc7942_0780 0.20 -1.6 772,996 + Synpcc7942_0780 0.30 -2.0 772,996 + Synpcc7942_0780 0.30 -0.6 773,047 - Synpcc7942_0780 0.34 -2.2 773,087 + Synpcc7942_0780 0.37 -0.0 773,095 + Synpcc7942_0780 0.37 +2.7 773,103 - +1.0 773,103 - Synpcc7942_0780 0.38 +2.6 773,136 + Synpcc7942_0780 0.40 +0.5 773,144 - Synpcc7942_0780 0.41 -3.2 773,160 - Synpcc7942_0780 0.42 +0.4 773,160 - Synpcc7942_0780 0.42 +3.2 773,160 - Synpcc7942_0780 0.42 +1.7 773,191 + Synpcc7942_0780 0.44 -1.6 773,230 + Synpcc7942_0780 0.47 -0.6 773,268 + Synpcc7942_0780 0.50 -1.2 773,276 - Synpcc7942_0780 0.50 +2.6 773,298 - Synpcc7942_0780 0.52 +0.4 773,337 + Synpcc7942_0780 0.55 -1.8 773,340 - Synpcc7942_0780 0.55 -1.0 773,351 + Synpcc7942_0780 0.56 -0.0 773,351 + Synpcc7942_0780 0.56 -0.0 773,357 - Synpcc7942_0780 0.56 -0.0 773,359 - Synpcc7942_0780 0.56 -0.6 773,359 - Synpcc7942_0780 0.56 -0.6 773,359 - Synpcc7942_0780 0.56 -2.9 773,372 - Synpcc7942_0780 0.57 +2.0 773,380 - Synpcc7942_0780 0.58 +2.0 773,382 - Synpcc7942_0780 0.58 +1.3 773,382 - Synpcc7942_0780 0.58 +5.6 773,388 - Synpcc7942_0780 0.58 -0.6 773,388 - Synpcc7942_0780 0.58 +1.0 773,402 + Synpcc7942_0780 0.59 -2.3 773,402 + Synpcc7942_0780 0.59 -0.0 773,402 + Synpcc7942_0780 0.59 -0.9 773,402 + Synpcc7942_0780 0.59 -0.4 773,410 - Synpcc7942_0780 0.60 -1.3 773,415 - Synpcc7942_0780 0.60 -0.6 773,431 - Synpcc7942_0780 0.62 -3.3 773,432 - Synpcc7942_0780 0.62 -0.6 773,458 + Synpcc7942_0780 0.64 +1.2 773,458 + Synpcc7942_0780 0.64 -1.2 773,466 - Synpcc7942_0780 0.64 +1.6 773,466 - Synpcc7942_0780 0.64 -0.6 773,483 + Synpcc7942_0780 0.65 +3.9 773,483 + Synpcc7942_0780 0.65 -2.0 773,483 + Synpcc7942_0780 0.65 -0.6 773,491 - +1.0 773,491 - Synpcc7942_0780 0.66 -1.4 773,550 + Synpcc7942_0780 0.70 +3.1 773,550 + Synpcc7942_0780 0.70 -3.9 773,558 - Synpcc7942_0780 0.71 -1.0 773,558 - Synpcc7942_0780 0.71 -2.4 773,586 - Synpcc7942_0780 0.73 -2.0 773,592 - Synpcc7942_0780 0.73 +3.3 773,596 + Synpcc7942_0780 0.74 +1.7 773,599 + Synpcc7942_0780 0.74 +0.6 773,599 - Synpcc7942_0780 0.74 -0.6 773,607 + Synpcc7942_0780 0.74 +1.6 773,615 - Synpcc7942_0780 0.75 +2.0 773,668 - Synpcc7942_0780 0.79 -2.4 773,684 - Synpcc7942_0780 0.80 +1.0 773,686 + Synpcc7942_0780 0.80 -0.1 773,704 + Synpcc7942_0780 0.81 +3.7 773,709 - Synpcc7942_0780 0.82 -1.4 773,711 + Synpcc7942_0780 0.82 -2.8 773,757 - Synpcc7942_0780 0.85 +1.8 773,851 + +2.4 773,875 + +0.1 773,880 + -1.4 773,893 - -1.1 773,895 + -0.6 773,895 + +1.0 773,895 + +3.6 773,895 + +1.8 773,898 + -2.5 773,903 - -2.0 773,908 + +1.0 773,926 + +2.0 773,926 + -0.3 773,959 - +0.5 773,959 - -0.6 773,961 - -0.0 773,982 + -2.2 773,982 + +1.0 773,982 + +1.2 773,990 - +2.9 773,990 - +1.8 773,994 + -0.8 774,000 - +1.4 774,002 - -2.4 774,010 - -2.6 774,010 - +2.0 774,015 - -0.6 774,017 + -1.0 774,025 - -1.8 774,025 - +1.0 774,044 + +3.0 774,082 - -1.4 774,082 - +0.2 774,093 - -2.9 774,184 - +1.0 774,185 - +2.3 774,235 + -0.0 774,267 - ppsA Synpcc7942_0781 0.10 +3.3 774,291 + ppsA Synpcc7942_0781 0.11 +0.1 774,294 - ppsA Synpcc7942_0781 0.12 -1.4 774,299 - ppsA Synpcc7942_0781 0.12 +1.4 774,315 + ppsA Synpcc7942_0781 0.12 -1.8 774,336 + ppsA Synpcc7942_0781 0.13 -0.8 774,336 - ppsA Synpcc7942_0781 0.13 -0.6 774,344 - ppsA Synpcc7942_0781 0.14 -1.4 774,346 + ppsA Synpcc7942_0781 0.14 -0.6 774,353 + ppsA Synpcc7942_0781 0.14 -1.0 774,354 - ppsA Synpcc7942_0781 0.14 +1.0 774,361 - ppsA Synpcc7942_0781 0.14 -1.0 774,363 + ppsA Synpcc7942_0781 0.14 -1.7 774,363 - ppsA Synpcc7942_0781 0.14 +1.0 774,371 - ppsA Synpcc7942_0781 0.15 +1.3 774,374 + ppsA Synpcc7942_0781 0.15 +0.8 774,378 - ppsA Synpcc7942_0781 0.15 +2.2 774,382 - ppsA Synpcc7942_0781 0.15 -0.6 774,425 + ppsA Synpcc7942_0781 0.17 +0.3 774,445 + ppsA Synpcc7942_0781 0.18 -1.4 774,463 - ppsA Synpcc7942_0781 0.18 -2.2 774,482 + ppsA Synpcc7942_0781 0.19 -2.7 774,482 + ppsA Synpcc7942_0781 0.19 +1.0 774,482 + ppsA Synpcc7942_0781 0.19 -2.9 774,485 - ppsA Synpcc7942_0781 0.19 -2.7 774,489 - ppsA Synpcc7942_0781 0.19 +4.0 774,490 - ppsA Synpcc7942_0781 0.19 +3.1 774,490 - ppsA Synpcc7942_0781 0.19 +1.7 774,490 - ppsA Synpcc7942_0781 0.19 -1.8 774,490 - ppsA Synpcc7942_0781 0.19 +1.3 774,490 - ppsA Synpcc7942_0781 0.19 -0.9 774,490 - ppsA Synpcc7942_0781 0.19 -0.6 774,492 + ppsA Synpcc7942_0781 0.19 +3.8 774,495 - ppsA Synpcc7942_0781 0.20 -0.7 774,512 + ppsA Synpcc7942_0781 0.20 -2.0 774,543 + ppsA Synpcc7942_0781 0.21 -2.6 774,543 - ppsA Synpcc7942_0781 0.21 +1.0 774,558 + ppsA Synpcc7942_0781 0.22 +3.9 774,566 - +4.1 774,566 - ppsA Synpcc7942_0781 0.22 -0.0 774,620 - ppsA Synpcc7942_0781 0.24 -1.6 774,723 + ppsA Synpcc7942_0781 0.29 -1.6 774,731 - ppsA Synpcc7942_0781 0.29 +1.3 774,813 + ppsA Synpcc7942_0781 0.32 -0.0 774,821 - ppsA Synpcc7942_0781 0.32 -0.6 774,872 + ppsA Synpcc7942_0781 0.34 +1.0 774,875 - ppsA Synpcc7942_0781 0.35 +0.6 774,890 - ppsA Synpcc7942_0781 0.35 -2.6 774,890 - ppsA Synpcc7942_0781 0.35 +1.5 774,912 + ppsA Synpcc7942_0781 0.36 -0.8 774,920 - ppsA Synpcc7942_0781 0.36 +1.0 774,920 - ppsA Synpcc7942_0781 0.36 -0.6 774,920 - ppsA Synpcc7942_0781 0.36 -0.6 774,921 - ppsA Synpcc7942_0781 0.36 -1.0 774,954 + ppsA Synpcc7942_0781 0.38 -1.4 774,956 + ppsA Synpcc7942_0781 0.38 -2.0 774,956 + ppsA Synpcc7942_0781 0.38 +0.5 774,956 + ppsA Synpcc7942_0781 0.38 -2.0 774,956 - ppsA Synpcc7942_0781 0.38 -1.0 774,956 - ppsA Synpcc7942_0781 0.38 -1.4
Or see this region's nucleotide sequence