Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0651

Experiment: A22 0.000341796875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoD1 and nat are separated by 207 nucleotidesnat and priA are separated by 81 nucleotidespriA and Synpcc7942_0652 overlap by 38 nucleotides Synpcc7942_0649: rpoD1 - RNA polymerase sigma factor RpoD, at 642,767 to 643,966 rpoD1 Synpcc7942_0650: nat - hypothetical protein, at 644,174 to 644,659 nat Synpcc7942_0651: priA - primosome assembly protein PriA, at 644,741 to 647,161 priA Synpcc7942_0652: Synpcc7942_0652 - hypothetical protein, at 647,124 to 648,713 _0652 Position (kb) 644 645 646 647 648Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 644.169 kb on - strandat 644.247 kb on + strand, within natat 644.307 kb on + strand, within natat 644.319 kb on + strand, within natat 644.353 kb on + strand, within natat 644.353 kb on + strand, within natat 644.355 kb on + strand, within natat 644.355 kb on + strand, within natat 644.361 kb on - strand, within natat 644.369 kb on - strand, within natat 644.383 kb on - strand, within natat 644.412 kb on + strand, within natat 644.450 kb on + strand, within natat 644.450 kb on + strand, within natat 644.458 kb on - strand, within natat 644.489 kb on + strand, within natat 644.489 kb on + strand, within natat 644.489 kb on + strand, within natat 644.494 kb on + strand, within natat 644.497 kb on - strand, within natat 644.502 kb on + strand, within natat 644.507 kb on + strand, within natat 644.507 kb on + strandat 644.515 kb on - strand, within natat 644.548 kb on - strand, within natat 644.569 kb on - strand, within natat 644.577 kb on + strand, within natat 644.580 kb on - strand, within natat 644.632 kb on - strandat 644.637 kb on - strandat 644.639 kb on + strandat 644.647 kb on - strandat 644.656 kb on + strandat 644.664 kb on - strandat 644.664 kb on - strandat 644.718 kb on - strandat 644.719 kb on + strandat 644.720 kb on + strandat 644.759 kb on + strandat 644.764 kb on + strandat 644.772 kb on - strandat 647.193 kb on - strandat 647.194 kb on + strandat 647.201 kb on - strandat 647.251 kb on - strandat 647.253 kb on + strandat 647.290 kb on + strand, within Synpcc7942_0652at 647.291 kb on + strand, within Synpcc7942_0652at 647.327 kb on - strand, within Synpcc7942_0652at 647.328 kb on + strand, within Synpcc7942_0652at 647.384 kb on - strand, within Synpcc7942_0652at 647.410 kb on + strand, within Synpcc7942_0652at 647.418 kb on - strand, within Synpcc7942_0652at 647.426 kb on - strand, within Synpcc7942_0652at 647.428 kb on - strand, within Synpcc7942_0652at 647.440 kb on + strand, within Synpcc7942_0652at 647.445 kb on - strandat 647.464 kb on - strand, within Synpcc7942_0652at 647.537 kb on + strand, within Synpcc7942_0652at 647.537 kb on + strand, within Synpcc7942_0652at 647.539 kb on + strand, within Synpcc7942_0652at 647.539 kb on + strand, within Synpcc7942_0652at 647.539 kb on + strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.547 kb on - strand, within Synpcc7942_0652at 647.547 kb on - strand, within Synpcc7942_0652at 647.547 kb on - strand, within Synpcc7942_0652at 647.547 kb on - strand, within Synpcc7942_0652at 647.557 kb on + strand, within Synpcc7942_0652at 647.562 kb on + strand, within Synpcc7942_0652at 647.564 kb on - strand, within Synpcc7942_0652at 647.567 kb on + strand, within Synpcc7942_0652at 647.587 kb on + strand, within Synpcc7942_0652at 647.605 kb on - strand, within Synpcc7942_0652at 647.605 kb on - strand, within Synpcc7942_0652at 647.643 kb on - strand, within Synpcc7942_0652at 647.650 kb on + strand, within Synpcc7942_0652at 647.658 kb on - strand, within Synpcc7942_0652at 647.670 kb on + strand, within Synpcc7942_0652at 647.703 kb on - strand, within Synpcc7942_0652at 647.724 kb on - strand, within Synpcc7942_0652at 647.762 kb on - strand, within Synpcc7942_0652at 647.789 kb on - strand, within Synpcc7942_0652at 647.796 kb on + strand, within Synpcc7942_0652at 647.841 kb on - strand, within Synpcc7942_0652at 647.841 kb on - strand, within Synpcc7942_0652at 647.848 kb on - strand, within Synpcc7942_0652at 647.913 kb on + strandat 647.921 kb on - strand, within Synpcc7942_0652at 647.927 kb on - strand, within Synpcc7942_0652at 647.929 kb on - strand, within Synpcc7942_0652at 647.934 kb on + strand, within Synpcc7942_0652at 647.964 kb on + strand, within Synpcc7942_0652at 647.964 kb on + strand, within Synpcc7942_0652at 647.975 kb on + strand, within Synpcc7942_0652at 647.985 kb on - strand, within Synpcc7942_0652at 648.030 kb on + strand, within Synpcc7942_0652at 648.043 kb on - strand, within Synpcc7942_0652at 648.045 kb on + strand, within Synpcc7942_0652at 648.050 kb on - strand, within Synpcc7942_0652at 648.111 kb on - strand, within Synpcc7942_0652at 648.111 kb on - strand, within Synpcc7942_0652at 648.142 kb on + strand, within Synpcc7942_0652at 648.142 kb on + strand, within Synpcc7942_0652at 648.150 kb on + strand, within Synpcc7942_0652at 648.155 kb on + strand, within Synpcc7942_0652at 648.158 kb on - strand, within Synpcc7942_0652at 648.158 kb on - strand, within Synpcc7942_0652at 648.160 kb on + strand, within Synpcc7942_0652

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml
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644,169 - +1.6
644,247 + nat Synpcc7942_0650 0.15 -1.0
644,307 + nat Synpcc7942_0650 0.27 -2.5
644,319 + nat Synpcc7942_0650 0.30 +0.8
644,353 + nat Synpcc7942_0650 0.37 -1.8
644,353 + nat Synpcc7942_0650 0.37 +2.0
644,355 + nat Synpcc7942_0650 0.37 -0.8
644,355 + nat Synpcc7942_0650 0.37 -1.3
644,361 - nat Synpcc7942_0650 0.38 -0.0
644,369 - nat Synpcc7942_0650 0.40 -1.2
644,383 - nat Synpcc7942_0650 0.43 +0.8
644,412 + nat Synpcc7942_0650 0.49 +2.7
644,450 + nat Synpcc7942_0650 0.57 +1.6
644,450 + nat Synpcc7942_0650 0.57 -2.7
644,458 - nat Synpcc7942_0650 0.58 -0.3
644,489 + nat Synpcc7942_0650 0.65 -1.0
644,489 + nat Synpcc7942_0650 0.65 +0.8
644,489 + nat Synpcc7942_0650 0.65 -1.8
644,494 + nat Synpcc7942_0650 0.66 -1.6
644,497 - nat Synpcc7942_0650 0.66 +0.2
644,502 + nat Synpcc7942_0650 0.67 -0.4
644,507 + nat Synpcc7942_0650 0.69 -1.0
644,507 + +1.0
644,515 - nat Synpcc7942_0650 0.70 +3.5
644,548 - nat Synpcc7942_0650 0.77 +1.0
644,569 - nat Synpcc7942_0650 0.81 -2.2
644,577 + nat Synpcc7942_0650 0.83 -1.0
644,580 - nat Synpcc7942_0650 0.84 +0.0
644,632 - -1.8
644,637 - +0.0
644,639 + -0.6
644,647 - +3.5
644,656 + +1.5
644,664 - +1.0
644,664 - +1.0
644,718 - -3.1
644,719 + +2.8
644,720 + -2.2
644,759 + -1.0
644,764 + -2.9
644,772 - -1.8
647,193 - -2.1
647,194 + -3.2
647,201 - +0.0
647,251 - -2.2
647,253 + +1.0
647,290 + Synpcc7942_0652 0.10 -0.7
647,291 + Synpcc7942_0652 0.11 -2.0
647,327 - Synpcc7942_0652 0.13 +0.0
647,328 + Synpcc7942_0652 0.13 +0.5
647,384 - Synpcc7942_0652 0.16 +1.8
647,410 + Synpcc7942_0652 0.18 -1.3
647,418 - Synpcc7942_0652 0.18 +2.4
647,426 - Synpcc7942_0652 0.19 +0.4
647,428 - Synpcc7942_0652 0.19 -1.6
647,440 + Synpcc7942_0652 0.20 -1.0
647,445 - +1.0
647,464 - Synpcc7942_0652 0.21 -2.1
647,537 + Synpcc7942_0652 0.26 -1.8
647,537 + Synpcc7942_0652 0.26 -2.2
647,539 + Synpcc7942_0652 0.26 -0.6
647,539 + Synpcc7942_0652 0.26 -2.6
647,539 + Synpcc7942_0652 0.26 -0.6
647,545 - Synpcc7942_0652 0.26 +1.8
647,545 - Synpcc7942_0652 0.26 -1.3
647,545 - Synpcc7942_0652 0.26 -3.2
647,545 - Synpcc7942_0652 0.26 +0.8
647,545 - Synpcc7942_0652 0.26 +0.0
647,547 - Synpcc7942_0652 0.27 +0.4
647,547 - Synpcc7942_0652 0.27 +1.0
647,547 - Synpcc7942_0652 0.27 -2.6
647,547 - Synpcc7942_0652 0.27 +1.0
647,557 + Synpcc7942_0652 0.27 +1.5
647,562 + Synpcc7942_0652 0.28 -1.3
647,564 - Synpcc7942_0652 0.28 -2.0
647,567 + Synpcc7942_0652 0.28 -1.3
647,587 + Synpcc7942_0652 0.29 -0.8
647,605 - Synpcc7942_0652 0.30 -1.8
647,605 - Synpcc7942_0652 0.30 -1.0
647,643 - Synpcc7942_0652 0.33 +1.2
647,650 + Synpcc7942_0652 0.33 -2.3
647,658 - Synpcc7942_0652 0.34 -0.6
647,670 + Synpcc7942_0652 0.34 -0.3
647,703 - Synpcc7942_0652 0.36 -1.6
647,724 - Synpcc7942_0652 0.38 -1.3
647,762 - Synpcc7942_0652 0.40 -2.9
647,789 - Synpcc7942_0652 0.42 +0.0
647,796 + Synpcc7942_0652 0.42 +1.2
647,841 - Synpcc7942_0652 0.45 -1.3
647,841 - Synpcc7942_0652 0.45 -2.2
647,848 - Synpcc7942_0652 0.46 -1.3
647,913 + +1.0
647,921 - Synpcc7942_0652 0.50 -2.5
647,927 - Synpcc7942_0652 0.51 -1.3
647,929 - Synpcc7942_0652 0.51 -0.9
647,934 + Synpcc7942_0652 0.51 -3.4
647,964 + Synpcc7942_0652 0.53 +1.0
647,964 + Synpcc7942_0652 0.53 +2.4
647,975 + Synpcc7942_0652 0.54 -0.6
647,985 - Synpcc7942_0652 0.54 -2.6
648,030 + Synpcc7942_0652 0.57 +0.0
648,043 - Synpcc7942_0652 0.58 -2.5
648,045 + Synpcc7942_0652 0.58 -1.8
648,050 - Synpcc7942_0652 0.58 -1.6
648,111 - Synpcc7942_0652 0.62 -0.6
648,111 - Synpcc7942_0652 0.62 -2.5
648,142 + Synpcc7942_0652 0.64 -2.3
648,142 + Synpcc7942_0652 0.64 -2.3
648,150 + Synpcc7942_0652 0.65 -0.3
648,155 + Synpcc7942_0652 0.65 -2.2
648,158 - Synpcc7942_0652 0.65 -2.8
648,158 - Synpcc7942_0652 0.65 -1.0
648,160 + Synpcc7942_0652 0.65 -2.2

Or see this region's nucleotide sequence