Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0565 and Synpcc7942_0566 are separated by 11 nucleotides Synpcc7942_0566 and Synpcc7942_0567 are separated by 1 nucleotides Synpcc7942_0567 and codA are separated by 2 nucleotides
Synpcc7942_0565: Synpcc7942_0565 - FHA domain containing protein, at 546,588 to 547,250
_0565
Synpcc7942_0566: Synpcc7942_0566 - HAD-superfamily hydrolase subfamily IIB, at 547,262 to 548,017
_0566
Synpcc7942_0567: Synpcc7942_0567 - hypothetical protein, at 548,019 to 549,368
_0567
Synpcc7942_0568: codA - cytosine deaminase, at 549,371 to 550,687
codA
Position (kb) 548
549
550 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 547.021 kb on - strand, within Synpcc7942_0565 at 547.031 kb on - strand, within Synpcc7942_0565 at 547.038 kb on + strand, within Synpcc7942_0565 at 547.060 kb on + strand, within Synpcc7942_0565 at 547.066 kb on - strand, within Synpcc7942_0565 at 547.068 kb on - strand, within Synpcc7942_0565 at 547.072 kb on + strand, within Synpcc7942_0565 at 547.100 kb on + strand at 547.105 kb on + strand, within Synpcc7942_0565 at 547.168 kb on + strand, within Synpcc7942_0565 at 547.168 kb on + strand, within Synpcc7942_0565 at 547.168 kb on + strand, within Synpcc7942_0565 at 547.175 kb on + strand, within Synpcc7942_0565 at 547.190 kb on - strand at 547.223 kb on + strand at 547.236 kb on - strand at 547.282 kb on + strand at 547.288 kb on + strand at 547.296 kb on - strand at 547.302 kb on + strand at 547.327 kb on + strand at 547.333 kb on + strand at 547.366 kb on - strand, within Synpcc7942_0566 at 547.371 kb on + strand, within Synpcc7942_0566 at 547.371 kb on - strand, within Synpcc7942_0566 at 547.398 kb on + strand, within Synpcc7942_0566 at 547.398 kb on + strand, within Synpcc7942_0566 at 547.403 kb on - strand, within Synpcc7942_0566 at 547.403 kb on - strand, within Synpcc7942_0566 at 547.408 kb on + strand, within Synpcc7942_0566 at 547.414 kb on - strand, within Synpcc7942_0566 at 547.421 kb on - strand, within Synpcc7942_0566 at 547.435 kb on + strand, within Synpcc7942_0566 at 547.437 kb on - strand, within Synpcc7942_0566 at 547.448 kb on + strand, within Synpcc7942_0566 at 547.456 kb on - strand, within Synpcc7942_0566 at 547.519 kb on + strand, within Synpcc7942_0566 at 547.524 kb on + strand, within Synpcc7942_0566 at 547.528 kb on - strand, within Synpcc7942_0566 at 547.575 kb on + strand, within Synpcc7942_0566 at 547.594 kb on + strand, within Synpcc7942_0566 at 547.594 kb on + strand, within Synpcc7942_0566 at 547.607 kb on - strand, within Synpcc7942_0566 at 547.739 kb on + strand, within Synpcc7942_0566 at 547.748 kb on + strand, within Synpcc7942_0566 at 547.752 kb on - strand, within Synpcc7942_0566 at 547.764 kb on + strand, within Synpcc7942_0566 at 547.816 kb on + strand, within Synpcc7942_0566 at 547.824 kb on - strand, within Synpcc7942_0566 at 547.905 kb on + strand, within Synpcc7942_0566 at 547.905 kb on + strand, within Synpcc7942_0566 at 547.905 kb on + strand, within Synpcc7942_0566 at 547.905 kb on + strand, within Synpcc7942_0566 at 547.912 kb on + strand, within Synpcc7942_0566 at 547.930 kb on + strand, within Synpcc7942_0566 at 547.936 kb on + strand, within Synpcc7942_0566 at 547.936 kb on + strand, within Synpcc7942_0566 at 547.938 kb on - strand, within Synpcc7942_0566 at 547.955 kb on - strand at 547.997 kb on - strand at 548.017 kb on + strand at 548.017 kb on + strand at 548.059 kb on - strand at 548.061 kb on - strand at 548.099 kb on + strand at 548.115 kb on - strand at 548.201 kb on - strand, within Synpcc7942_0567 at 548.236 kb on - strand, within Synpcc7942_0567 at 548.244 kb on + strand, within Synpcc7942_0567 at 548.244 kb on + strand, within Synpcc7942_0567 at 548.244 kb on + strand, within Synpcc7942_0567 at 548.246 kb on + strand, within Synpcc7942_0567 at 548.262 kb on + strand, within Synpcc7942_0567 at 548.265 kb on - strand, within Synpcc7942_0567 at 548.302 kb on + strand, within Synpcc7942_0567 at 548.366 kb on - strand, within Synpcc7942_0567 at 548.367 kb on - strand, within Synpcc7942_0567 at 548.411 kb on + strand, within Synpcc7942_0567 at 548.422 kb on + strand, within Synpcc7942_0567 at 548.428 kb on - strand, within Synpcc7942_0567 at 548.432 kb on + strand, within Synpcc7942_0567 at 548.440 kb on - strand, within Synpcc7942_0567 at 548.448 kb on - strand, within Synpcc7942_0567 at 548.458 kb on - strand, within Synpcc7942_0567 at 548.460 kb on - strand, within Synpcc7942_0567 at 548.465 kb on - strand, within Synpcc7942_0567 at 548.465 kb on - strand, within Synpcc7942_0567 at 548.484 kb on - strand, within Synpcc7942_0567 at 548.490 kb on + strand, within Synpcc7942_0567 at 548.496 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.534 kb on + strand, within Synpcc7942_0567 at 548.544 kb on - strand, within Synpcc7942_0567 at 548.552 kb on - strand, within Synpcc7942_0567 at 548.552 kb on - strand, within Synpcc7942_0567 at 548.556 kb on + strand, within Synpcc7942_0567 at 548.564 kb on - strand, within Synpcc7942_0567 at 548.564 kb on - strand, within Synpcc7942_0567 at 548.673 kb on + strand, within Synpcc7942_0567 at 548.681 kb on + strand, within Synpcc7942_0567 at 548.681 kb on - strand, within Synpcc7942_0567 at 548.705 kb on - strand, within Synpcc7942_0567 at 548.711 kb on + strand, within Synpcc7942_0567 at 548.745 kb on + strand, within Synpcc7942_0567 at 548.757 kb on + strand, within Synpcc7942_0567 at 548.765 kb on - strand, within Synpcc7942_0567 at 548.780 kb on - strand, within Synpcc7942_0567 at 548.800 kb on + strand, within Synpcc7942_0567 at 548.800 kb on + strand, within Synpcc7942_0567 at 548.813 kb on - strand, within Synpcc7942_0567 at 548.819 kb on - strand, within Synpcc7942_0567 at 548.823 kb on + strand at 548.828 kb on + strand, within Synpcc7942_0567 at 548.833 kb on + strand, within Synpcc7942_0567 at 548.841 kb on - strand, within Synpcc7942_0567 at 548.842 kb on + strand, within Synpcc7942_0567 at 548.849 kb on + strand, within Synpcc7942_0567 at 548.854 kb on + strand, within Synpcc7942_0567 at 548.862 kb on - strand, within Synpcc7942_0567 at 548.872 kb on + strand, within Synpcc7942_0567 at 548.885 kb on + strand, within Synpcc7942_0567 at 548.890 kb on - strand, within Synpcc7942_0567 at 548.893 kb on - strand, within Synpcc7942_0567 at 548.923 kb on + strand, within Synpcc7942_0567 at 548.937 kb on + strand, within Synpcc7942_0567 at 548.945 kb on + strand, within Synpcc7942_0567 at 548.965 kb on + strand, within Synpcc7942_0567 at 548.965 kb on + strand, within Synpcc7942_0567 at 548.973 kb on - strand, within Synpcc7942_0567 at 548.992 kb on - strand, within Synpcc7942_0567 at 549.098 kb on - strand, within Synpcc7942_0567 at 549.100 kb on + strand, within Synpcc7942_0567 at 549.119 kb on + strand, within Synpcc7942_0567 at 549.134 kb on + strand, within Synpcc7942_0567 at 549.134 kb on + strand, within Synpcc7942_0567 at 549.134 kb on + strand, within Synpcc7942_0567 at 549.137 kb on - strand, within Synpcc7942_0567 at 549.213 kb on + strand, within Synpcc7942_0567 at 549.221 kb on - strand, within Synpcc7942_0567 at 549.276 kb on + strand at 549.276 kb on + strand at 549.282 kb on + strand at 549.282 kb on + strand at 549.282 kb on + strand at 549.283 kb on + strand at 549.290 kb on - strand at 549.290 kb on - strand at 549.291 kb on - strand at 549.305 kb on + strand at 549.338 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.346 kb on - strand at 549.353 kb on - strand at 549.353 kb on - strand at 549.353 kb on - strand at 549.389 kb on + strand at 549.412 kb on + strand at 549.464 kb on - strand at 549.550 kb on + strand, within codA at 549.550 kb on + strand, within codA at 549.596 kb on - strand, within codA at 549.597 kb on + strand, within codA at 549.605 kb on - strand, within codA at 549.624 kb on - strand, within codA at 549.653 kb on + strand, within codA at 549.661 kb on - strand, within codA at 549.669 kb on + strand, within codA at 549.677 kb on - strand, within codA at 549.701 kb on - strand, within codA at 549.731 kb on + strand, within codA at 549.742 kb on + strand, within codA at 549.750 kb on - strand, within codA at 549.750 kb on - strand, within codA at 549.750 kb on - strand, within codA at 549.828 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.867 kb on + strand, within codA at 549.867 kb on + strand, within codA at 549.875 kb on - strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.894 kb on - strand, within codA at 549.894 kb on - strand, within codA at 549.894 kb on - strand, within codA at 549.900 kb on + strand, within codA at 549.908 kb on - strand, within codA at 549.935 kb on + strand, within codA at 549.945 kb on - strand, within codA at 549.948 kb on + strand, within codA at 549.950 kb on + strand, within codA at 549.973 kb on + strand, within codA at 549.975 kb on - strand, within codA at 550.080 kb on + strand, within codA at 550.088 kb on - strand, within codA at 550.093 kb on - strand, within codA at 550.147 kb on + strand, within codA at 550.155 kb on - strand, within codA at 550.155 kb on - strand, within codA at 550.156 kb on + strand, within codA at 550.165 kb on - strand, within codA at 550.226 kb on + strand, within codA at 550.226 kb on + strand, within codA at 550.234 kb on - strand at 550.234 kb on - strand, within codA at 550.263 kb on - strand, within codA at 550.270 kb on + strand, within codA at 550.278 kb on - strand, within codA at 550.283 kb on - strand, within codA at 550.294 kb on - strand, within codA at 550.298 kb on + strand, within codA at 550.311 kb on - strand, within codA at 550.311 kb on - strand, within codA at 550.312 kb on - strand, within codA
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 547,021 - Synpcc7942_0565 0.65 +3.4 547,031 - Synpcc7942_0565 0.67 +2.3 547,038 + Synpcc7942_0565 0.68 +0.1 547,060 + Synpcc7942_0565 0.71 -1.7 547,066 - Synpcc7942_0565 0.72 +4.3 547,068 - Synpcc7942_0565 0.72 +1.4 547,072 + Synpcc7942_0565 0.73 +1.9 547,100 + +0.1 547,105 + Synpcc7942_0565 0.78 +0.1 547,168 + Synpcc7942_0565 0.87 +2.5 547,168 + Synpcc7942_0565 0.87 -0.6 547,168 + Synpcc7942_0565 0.87 +0.1 547,175 + Synpcc7942_0565 0.89 -1.7 547,190 - +1.8 547,223 + +4.0 547,236 - +0.1 547,282 + +2.3 547,288 + +2.2 547,296 - -2.1 547,302 + -1.5 547,327 + +2.7 547,333 + +0.1 547,366 - Synpcc7942_0566 0.14 -1.7 547,371 + Synpcc7942_0566 0.14 -1.7 547,371 - Synpcc7942_0566 0.14 -1.8 547,398 + Synpcc7942_0566 0.18 +1.1 547,398 + Synpcc7942_0566 0.18 +1.8 547,403 - Synpcc7942_0566 0.19 -0.9 547,403 - Synpcc7942_0566 0.19 +0.9 547,408 + Synpcc7942_0566 0.19 -0.5 547,414 - Synpcc7942_0566 0.20 -0.9 547,421 - Synpcc7942_0566 0.21 +1.5 547,435 + Synpcc7942_0566 0.23 +2.3 547,437 - Synpcc7942_0566 0.23 +4.6 547,448 + Synpcc7942_0566 0.25 +0.1 547,456 - Synpcc7942_0566 0.26 -1.2 547,519 + Synpcc7942_0566 0.34 +2.4 547,524 + Synpcc7942_0566 0.35 +1.1 547,528 - Synpcc7942_0566 0.35 -0.7 547,575 + Synpcc7942_0566 0.41 +2.4 547,594 + Synpcc7942_0566 0.44 -2.3 547,594 + Synpcc7942_0566 0.44 -1.4 547,607 - Synpcc7942_0566 0.46 +1.5 547,739 + Synpcc7942_0566 0.63 -0.5 547,748 + Synpcc7942_0566 0.64 -0.9 547,752 - Synpcc7942_0566 0.65 -0.5 547,764 + Synpcc7942_0566 0.66 +0.8 547,816 + Synpcc7942_0566 0.73 +3.3 547,824 - Synpcc7942_0566 0.74 +1.1 547,905 + Synpcc7942_0566 0.85 -1.2 547,905 + Synpcc7942_0566 0.85 +0.1 547,905 + Synpcc7942_0566 0.85 -0.3 547,905 + Synpcc7942_0566 0.85 +1.4 547,912 + Synpcc7942_0566 0.86 -0.1 547,930 + Synpcc7942_0566 0.88 +1.3 547,936 + Synpcc7942_0566 0.89 -0.9 547,936 + Synpcc7942_0566 0.89 +3.0 547,938 - Synpcc7942_0566 0.89 -0.5 547,955 - -1.5 547,997 - +1.1 548,017 + +4.2 548,017 + +1.1 548,059 - -1.8 548,061 - -1.9 548,099 + -2.1 548,115 - -0.9 548,201 - Synpcc7942_0567 0.13 +1.1 548,236 - Synpcc7942_0567 0.16 -0.5 548,244 + Synpcc7942_0567 0.17 +0.1 548,244 + Synpcc7942_0567 0.17 -1.9 548,244 + Synpcc7942_0567 0.17 +0.1 548,246 + Synpcc7942_0567 0.17 -1.9 548,262 + Synpcc7942_0567 0.18 +0.1 548,265 - Synpcc7942_0567 0.18 -1.7 548,302 + Synpcc7942_0567 0.21 -0.2 548,366 - Synpcc7942_0567 0.26 -1.9 548,367 - Synpcc7942_0567 0.26 -0.5 548,411 + Synpcc7942_0567 0.29 -1.5 548,422 + Synpcc7942_0567 0.30 -0.5 548,428 - Synpcc7942_0567 0.30 +0.1 548,432 + Synpcc7942_0567 0.31 -1.6 548,440 - Synpcc7942_0567 0.31 -1.2 548,448 - Synpcc7942_0567 0.32 +2.0 548,458 - Synpcc7942_0567 0.33 -2.1 548,460 - Synpcc7942_0567 0.33 -1.9 548,465 - Synpcc7942_0567 0.33 -0.5 548,465 - Synpcc7942_0567 0.33 +0.1 548,484 - Synpcc7942_0567 0.34 +0.1 548,490 + Synpcc7942_0567 0.35 -2.8 548,496 - Synpcc7942_0567 0.35 -0.5 548,503 - Synpcc7942_0567 0.36 -1.2 548,503 - Synpcc7942_0567 0.36 +0.1 548,503 - Synpcc7942_0567 0.36 -1.1 548,503 - Synpcc7942_0567 0.36 +1.5 548,534 + Synpcc7942_0567 0.38 +0.4 548,544 - Synpcc7942_0567 0.39 -4.2 548,552 - Synpcc7942_0567 0.39 -1.9 548,552 - Synpcc7942_0567 0.39 -2.0 548,556 + Synpcc7942_0567 0.40 -1.6 548,564 - Synpcc7942_0567 0.40 -1.5 548,564 - Synpcc7942_0567 0.40 -1.7 548,673 + Synpcc7942_0567 0.48 -0.1 548,681 + Synpcc7942_0567 0.49 -2.5 548,681 - Synpcc7942_0567 0.49 +1.1 548,705 - Synpcc7942_0567 0.51 -1.5 548,711 + Synpcc7942_0567 0.51 +1.1 548,745 + Synpcc7942_0567 0.54 +0.1 548,757 + Synpcc7942_0567 0.55 -2.7 548,765 - Synpcc7942_0567 0.55 -1.1 548,780 - Synpcc7942_0567 0.56 -1.5 548,800 + Synpcc7942_0567 0.58 -0.5 548,800 + Synpcc7942_0567 0.58 -0.9 548,813 - Synpcc7942_0567 0.59 -1.6 548,819 - Synpcc7942_0567 0.59 +3.7 548,823 + +0.1 548,828 + Synpcc7942_0567 0.60 -0.9 548,833 + Synpcc7942_0567 0.60 -1.2 548,841 - Synpcc7942_0567 0.61 +0.1 548,842 + Synpcc7942_0567 0.61 -1.1 548,849 + Synpcc7942_0567 0.61 -1.4 548,854 + Synpcc7942_0567 0.62 -2.2 548,862 - Synpcc7942_0567 0.62 -0.9 548,872 + Synpcc7942_0567 0.63 -0.5 548,885 + Synpcc7942_0567 0.64 -0.9 548,890 - Synpcc7942_0567 0.65 -1.5 548,893 - Synpcc7942_0567 0.65 -1.9 548,923 + Synpcc7942_0567 0.67 -2.6 548,937 + Synpcc7942_0567 0.68 -1.5 548,945 + Synpcc7942_0567 0.69 -1.7 548,965 + Synpcc7942_0567 0.70 -1.2 548,965 + Synpcc7942_0567 0.70 -1.5 548,973 - Synpcc7942_0567 0.71 +4.7 548,992 - Synpcc7942_0567 0.72 +2.1 549,098 - Synpcc7942_0567 0.80 -2.1 549,100 + Synpcc7942_0567 0.80 -0.9 549,119 + Synpcc7942_0567 0.81 +0.3 549,134 + Synpcc7942_0567 0.83 -1.2 549,134 + Synpcc7942_0567 0.83 -1.5 549,134 + Synpcc7942_0567 0.83 -2.2 549,137 - Synpcc7942_0567 0.83 +2.3 549,213 + Synpcc7942_0567 0.88 -1.3 549,221 - Synpcc7942_0567 0.89 -4.9 549,276 + +0.3 549,276 + -0.9 549,282 + -1.2 549,282 + -0.5 549,282 + +0.2 549,283 + +1.4 549,290 - -0.9 549,290 - +2.7 549,291 - -0.9 549,305 + +2.0 549,338 + -1.7 549,345 + -2.2 549,345 + +1.1 549,345 + -0.9 549,345 + -0.4 549,345 + +2.4 549,346 - -1.2 549,353 - -0.9 549,353 - -2.1 549,353 - +0.1 549,389 + -1.1 549,412 + -1.9 549,464 - +1.1 549,550 + codA Synpcc7942_0568 0.14 -2.9 549,550 + codA Synpcc7942_0568 0.14 -2.6 549,596 - codA Synpcc7942_0568 0.17 -2.4 549,597 + codA Synpcc7942_0568 0.17 -2.6 549,605 - codA Synpcc7942_0568 0.18 +0.3 549,624 - codA Synpcc7942_0568 0.19 -1.4 549,653 + codA Synpcc7942_0568 0.21 +0.5 549,661 - codA Synpcc7942_0568 0.22 -0.1 549,669 + codA Synpcc7942_0568 0.23 -1.5 549,677 - codA Synpcc7942_0568 0.23 -1.7 549,701 - codA Synpcc7942_0568 0.25 +1.9 549,731 + codA Synpcc7942_0568 0.27 -0.9 549,742 + codA Synpcc7942_0568 0.28 -3.7 549,750 - codA Synpcc7942_0568 0.29 -0.5 549,750 - codA Synpcc7942_0568 0.29 -1.9 549,750 - codA Synpcc7942_0568 0.29 -1.9 549,828 + codA Synpcc7942_0568 0.35 +1.1 549,843 + codA Synpcc7942_0568 0.36 -1.3 549,843 + codA Synpcc7942_0568 0.36 -0.2 549,843 + codA Synpcc7942_0568 0.36 -0.1 549,867 + codA Synpcc7942_0568 0.38 -0.5 549,867 + codA Synpcc7942_0568 0.38 -2.2 549,875 - codA Synpcc7942_0568 0.38 -0.5 549,886 + codA Synpcc7942_0568 0.39 +1.1 549,886 + codA Synpcc7942_0568 0.39 -0.9 549,886 + codA Synpcc7942_0568 0.39 -1.5 549,886 + codA Synpcc7942_0568 0.39 -1.9 549,894 - codA Synpcc7942_0568 0.40 -2.7 549,894 - codA Synpcc7942_0568 0.40 -0.2 549,894 - codA Synpcc7942_0568 0.40 -2.4 549,900 + codA Synpcc7942_0568 0.40 -2.2 549,908 - codA Synpcc7942_0568 0.41 -0.7 549,935 + codA Synpcc7942_0568 0.43 -2.1 549,945 - codA Synpcc7942_0568 0.44 +1.1 549,948 + codA Synpcc7942_0568 0.44 -2.5 549,950 + codA Synpcc7942_0568 0.44 -1.5 549,973 + codA Synpcc7942_0568 0.46 -2.2 549,975 - codA Synpcc7942_0568 0.46 -1.9 550,080 + codA Synpcc7942_0568 0.54 -4.0 550,088 - codA Synpcc7942_0568 0.54 -3.3 550,093 - codA Synpcc7942_0568 0.55 -2.7 550,147 + codA Synpcc7942_0568 0.59 -2.2 550,155 - codA Synpcc7942_0568 0.60 -2.2 550,155 - codA Synpcc7942_0568 0.60 -1.2 550,156 + codA Synpcc7942_0568 0.60 -0.5 550,165 - codA Synpcc7942_0568 0.60 +1.8 550,226 + codA Synpcc7942_0568 0.65 -3.2 550,226 + codA Synpcc7942_0568 0.65 -0.9 550,234 - +0.1 550,234 - codA Synpcc7942_0568 0.66 -0.1 550,263 - codA Synpcc7942_0568 0.68 -0.3 550,270 + codA Synpcc7942_0568 0.68 -0.3 550,278 - codA Synpcc7942_0568 0.69 -1.4 550,283 - codA Synpcc7942_0568 0.69 +0.6 550,294 - codA Synpcc7942_0568 0.70 +1.1 550,298 + codA Synpcc7942_0568 0.70 -0.5 550,311 - codA Synpcc7942_0568 0.71 -0.9 550,311 - codA Synpcc7942_0568 0.71 +1.5 550,312 - codA Synpcc7942_0568 0.71 -2.9
Or see this region's nucleotide sequence