Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0528 and nagB overlap by 36 nucleotides nagB and Synpcc7942_0530 are separated by 3 nucleotides Synpcc7942_0530 and Synpcc7942_0531 are separated by 24 nucleotides
Synpcc7942_0528: Synpcc7942_0528 - Lipopolysaccharide biosynthesis proteins LPS, at 512,589 to 513,578
_0528
Synpcc7942_0529: nagB - 6-phosphogluconolactonase, at 513,543 to 514,331
nagB
Synpcc7942_0530: Synpcc7942_0530 - 4Fe-4S cluster binding, at 514,335 to 515,288
_0530
Synpcc7942_0531: Synpcc7942_0531 - TPR repeat, at 515,313 to 516,176
_0531
Position (kb) 514
515
516 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 513.378 kb on + strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.416 kb on + strand, within Synpcc7942_0528 at 513.418 kb on - strand, within Synpcc7942_0528 at 513.447 kb on + strand, within Synpcc7942_0528 at 513.460 kb on - strand, within Synpcc7942_0528 at 513.476 kb on - strand, within Synpcc7942_0528 at 513.488 kb on + strand at 513.496 kb on - strand at 513.499 kb on + strand at 513.512 kb on + strand at 513.516 kb on + strand at 513.516 kb on + strand at 513.519 kb on - strand at 513.520 kb on - strand at 513.524 kb on - strand at 513.524 kb on - strand at 513.533 kb on + strand at 513.547 kb on - strand at 513.559 kb on - strand at 513.561 kb on + strand at 513.564 kb on - strand at 513.564 kb on - strand at 513.575 kb on + strand at 513.581 kb on + strand at 513.583 kb on - strand at 513.593 kb on - strand at 513.593 kb on - strand at 513.596 kb on + strand at 513.596 kb on + strand at 513.605 kb on - strand at 513.630 kb on + strand, within nagB at 513.671 kb on - strand, within nagB at 513.693 kb on - strand, within nagB at 513.723 kb on - strand, within nagB at 513.735 kb on + strand, within nagB at 513.754 kb on - strand, within nagB at 513.765 kb on + strand, within nagB at 513.766 kb on - strand, within nagB at 513.775 kb on + strand, within nagB at 513.799 kb on + strand, within nagB at 513.814 kb on - strand, within nagB at 513.816 kb on + strand, within nagB at 513.856 kb on + strand, within nagB at 513.858 kb on - strand, within nagB at 513.908 kb on + strand, within nagB at 513.916 kb on - strand, within nagB at 513.940 kb on - strand, within nagB at 513.990 kb on + strand, within nagB at 513.990 kb on + strand, within nagB at 514.004 kb on - strand, within nagB at 514.019 kb on - strand, within nagB at 514.027 kb on + strand, within nagB at 514.067 kb on - strand, within nagB at 514.080 kb on + strand, within nagB at 514.088 kb on - strand, within nagB at 514.088 kb on - strand, within nagB at 514.094 kb on + strand, within nagB at 514.247 kb on - strand, within nagB at 514.272 kb on - strand at 514.289 kb on + strand at 514.297 kb on - strand at 514.330 kb on + strand at 514.358 kb on + strand at 514.361 kb on - strand at 514.361 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.392 kb on - strand at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.527 kb on + strand, within Synpcc7942_0530 at 514.540 kb on + strand, within Synpcc7942_0530 at 514.552 kb on - strand, within Synpcc7942_0530 at 514.559 kb on + strand, within Synpcc7942_0530 at 514.561 kb on + strand, within Synpcc7942_0530 at 514.562 kb on - strand, within Synpcc7942_0530 at 514.567 kb on - strand, within Synpcc7942_0530 at 514.579 kb on + strand, within Synpcc7942_0530 at 514.587 kb on - strand, within Synpcc7942_0530 at 514.618 kb on + strand, within Synpcc7942_0530 at 514.655 kb on - strand, within Synpcc7942_0530 at 514.670 kb on + strand, within Synpcc7942_0530 at 514.679 kb on + strand, within Synpcc7942_0530 at 514.715 kb on + strand, within Synpcc7942_0530 at 514.718 kb on + strand, within Synpcc7942_0530 at 514.736 kb on - strand, within Synpcc7942_0530 at 514.746 kb on - strand, within Synpcc7942_0530 at 514.764 kb on + strand, within Synpcc7942_0530 at 514.764 kb on + strand, within Synpcc7942_0530 at 514.807 kb on + strand, within Synpcc7942_0530 at 514.845 kb on + strand, within Synpcc7942_0530 at 514.853 kb on - strand, within Synpcc7942_0530 at 514.876 kb on - strand, within Synpcc7942_0530 at 514.886 kb on - strand, within Synpcc7942_0530 at 514.903 kb on + strand, within Synpcc7942_0530 at 514.903 kb on + strand, within Synpcc7942_0530 at 514.903 kb on + strand, within Synpcc7942_0530 at 514.911 kb on - strand, within Synpcc7942_0530 at 514.920 kb on + strand, within Synpcc7942_0530 at 514.928 kb on - strand, within Synpcc7942_0530 at 514.937 kb on + strand, within Synpcc7942_0530 at 514.937 kb on + strand, within Synpcc7942_0530 at 514.937 kb on + strand, within Synpcc7942_0530 at 514.945 kb on - strand, within Synpcc7942_0530 at 514.945 kb on - strand, within Synpcc7942_0530 at 514.945 kb on - strand, within Synpcc7942_0530 at 514.966 kb on - strand, within Synpcc7942_0530 at 514.968 kb on + strand, within Synpcc7942_0530 at 514.980 kb on + strand, within Synpcc7942_0530 at 514.998 kb on + strand, within Synpcc7942_0530 at 515.025 kb on + strand, within Synpcc7942_0530 at 515.033 kb on - strand, within Synpcc7942_0530 at 515.056 kb on + strand, within Synpcc7942_0530 at 515.076 kb on + strand, within Synpcc7942_0530 at 515.135 kb on - strand, within Synpcc7942_0530 at 515.145 kb on - strand, within Synpcc7942_0530 at 515.145 kb on - strand, within Synpcc7942_0530 at 515.145 kb on - strand, within Synpcc7942_0530 at 515.150 kb on - strand, within Synpcc7942_0530 at 515.151 kb on + strand, within Synpcc7942_0530 at 515.161 kb on - strand at 515.163 kb on + strand, within Synpcc7942_0530 at 515.174 kb on + strand, within Synpcc7942_0530 at 515.190 kb on + strand, within Synpcc7942_0530 at 515.197 kb on + strand at 515.197 kb on - strand at 515.212 kb on + strand at 515.217 kb on - strand at 515.245 kb on + strand at 515.268 kb on + strand at 515.318 kb on - strand at 515.438 kb on - strand, within Synpcc7942_0531 at 515.438 kb on - strand, within Synpcc7942_0531 at 515.682 kb on + strand, within Synpcc7942_0531 at 516.124 kb on - strand at 516.136 kb on - strand at 516.141 kb on - strand at 516.235 kb on + strand at 516.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 513,378 + Synpcc7942_0528 0.80 +0.1 513,386 - Synpcc7942_0528 0.81 -0.5 513,386 - Synpcc7942_0528 0.81 -3.5 513,386 - Synpcc7942_0528 0.81 +1.7 513,386 - Synpcc7942_0528 0.81 +0.5 513,416 + Synpcc7942_0528 0.84 +0.1 513,418 - Synpcc7942_0528 0.84 +1.1 513,447 + Synpcc7942_0528 0.87 -2.2 513,460 - Synpcc7942_0528 0.88 -0.9 513,476 - Synpcc7942_0528 0.90 -1.5 513,488 + +1.3 513,496 - +0.4 513,499 + +1.4 513,512 + -2.0 513,516 + -0.5 513,516 + +3.3 513,519 - +1.2 513,520 - +0.1 513,524 - -1.0 513,524 - +0.3 513,533 + +1.9 513,547 - -0.3 513,559 - -0.9 513,561 + -0.5 513,564 - +0.1 513,564 - -0.5 513,575 + -3.2 513,581 + -0.9 513,583 - -3.0 513,593 - -2.7 513,593 - +2.7 513,596 + -1.2 513,596 + +1.7 513,605 - +2.4 513,630 + nagB Synpcc7942_0529 0.11 -2.7 513,671 - nagB Synpcc7942_0529 0.16 +2.1 513,693 - nagB Synpcc7942_0529 0.19 +0.4 513,723 - nagB Synpcc7942_0529 0.23 -1.7 513,735 + nagB Synpcc7942_0529 0.24 +1.5 513,754 - nagB Synpcc7942_0529 0.27 -1.7 513,765 + nagB Synpcc7942_0529 0.28 -0.5 513,766 - nagB Synpcc7942_0529 0.28 +1.1 513,775 + nagB Synpcc7942_0529 0.29 -0.4 513,799 + nagB Synpcc7942_0529 0.32 -0.9 513,814 - nagB Synpcc7942_0529 0.34 -2.0 513,816 + nagB Synpcc7942_0529 0.35 +2.4 513,856 + nagB Synpcc7942_0529 0.40 -0.9 513,858 - nagB Synpcc7942_0529 0.40 -2.6 513,908 + nagB Synpcc7942_0529 0.46 +2.2 513,916 - nagB Synpcc7942_0529 0.47 +2.1 513,940 - nagB Synpcc7942_0529 0.50 +1.1 513,990 + nagB Synpcc7942_0529 0.57 +1.1 513,990 + nagB Synpcc7942_0529 0.57 +1.7 514,004 - nagB Synpcc7942_0529 0.58 +1.1 514,019 - nagB Synpcc7942_0529 0.60 -1.7 514,027 + nagB Synpcc7942_0529 0.61 -1.2 514,067 - nagB Synpcc7942_0529 0.66 -1.5 514,080 + nagB Synpcc7942_0529 0.68 -0.5 514,088 - nagB Synpcc7942_0529 0.69 -1.2 514,088 - nagB Synpcc7942_0529 0.69 -0.3 514,094 + nagB Synpcc7942_0529 0.70 +0.3 514,247 - nagB Synpcc7942_0529 0.89 -4.4 514,272 - +0.1 514,289 + +1.2 514,297 - +1.1 514,330 + +0.9 514,358 + -2.0 514,361 - -0.9 514,361 - -1.8 514,366 - +2.3 514,366 - -2.2 514,366 - +0.1 514,366 - -0.5 514,366 - +0.5 514,366 - +4.7 514,392 - +1.1 514,458 + Synpcc7942_0530 0.13 +0.5 514,458 + Synpcc7942_0530 0.13 +1.4 514,458 + Synpcc7942_0530 0.13 +2.7 514,458 + Synpcc7942_0530 0.13 -1.7 514,458 + Synpcc7942_0530 0.13 +3.1 514,466 - Synpcc7942_0530 0.14 +3.1 514,466 - Synpcc7942_0530 0.14 -2.0 514,466 - Synpcc7942_0530 0.14 +2.6 514,466 - Synpcc7942_0530 0.14 +2.4 514,466 - Synpcc7942_0530 0.14 +3.0 514,527 + Synpcc7942_0530 0.20 +5.7 514,540 + Synpcc7942_0530 0.21 -1.7 514,552 - Synpcc7942_0530 0.23 +2.1 514,559 + Synpcc7942_0530 0.23 +5.0 514,561 + Synpcc7942_0530 0.24 +1.2 514,562 - Synpcc7942_0530 0.24 +3.5 514,567 - Synpcc7942_0530 0.24 -0.4 514,579 + Synpcc7942_0530 0.26 +1.5 514,587 - Synpcc7942_0530 0.26 -0.4 514,618 + Synpcc7942_0530 0.30 +1.9 514,655 - Synpcc7942_0530 0.34 +1.9 514,670 + Synpcc7942_0530 0.35 +0.2 514,679 + Synpcc7942_0530 0.36 +0.4 514,715 + Synpcc7942_0530 0.40 +4.3 514,718 + Synpcc7942_0530 0.40 +2.3 514,736 - Synpcc7942_0530 0.42 +0.9 514,746 - Synpcc7942_0530 0.43 +1.8 514,764 + Synpcc7942_0530 0.45 +1.1 514,764 + Synpcc7942_0530 0.45 -0.9 514,807 + Synpcc7942_0530 0.49 -0.9 514,845 + Synpcc7942_0530 0.53 +3.3 514,853 - Synpcc7942_0530 0.54 -3.1 514,876 - Synpcc7942_0530 0.57 +2.1 514,886 - Synpcc7942_0530 0.58 -3.3 514,903 + Synpcc7942_0530 0.60 -0.0 514,903 + Synpcc7942_0530 0.60 +3.9 514,903 + Synpcc7942_0530 0.60 -1.2 514,911 - Synpcc7942_0530 0.60 +2.5 514,920 + Synpcc7942_0530 0.61 +1.3 514,928 - Synpcc7942_0530 0.62 -1.6 514,937 + Synpcc7942_0530 0.63 -0.9 514,937 + Synpcc7942_0530 0.63 +0.4 514,937 + Synpcc7942_0530 0.63 +3.3 514,945 - Synpcc7942_0530 0.64 -1.2 514,945 - Synpcc7942_0530 0.64 -1.9 514,945 - Synpcc7942_0530 0.64 +0.7 514,966 - Synpcc7942_0530 0.66 +2.9 514,968 + Synpcc7942_0530 0.66 +2.7 514,980 + Synpcc7942_0530 0.68 +1.6 514,998 + Synpcc7942_0530 0.69 +4.4 515,025 + Synpcc7942_0530 0.72 -2.2 515,033 - Synpcc7942_0530 0.73 +2.1 515,056 + Synpcc7942_0530 0.76 +2.4 515,076 + Synpcc7942_0530 0.78 +3.2 515,135 - Synpcc7942_0530 0.84 +3.0 515,145 - Synpcc7942_0530 0.85 +3.1 515,145 - Synpcc7942_0530 0.85 +3.1 515,145 - Synpcc7942_0530 0.85 -0.9 515,150 - Synpcc7942_0530 0.85 +1.8 515,151 + Synpcc7942_0530 0.86 +0.7 515,161 - +6.7 515,163 + Synpcc7942_0530 0.87 +0.1 515,174 + Synpcc7942_0530 0.88 -1.9 515,190 + Synpcc7942_0530 0.90 +4.4 515,197 + +0.1 515,197 - +1.1 515,212 + +0.4 515,217 - -1.4 515,245 + -0.9 515,268 + -1.9 515,318 - -0.6 515,438 - Synpcc7942_0531 0.14 -0.4 515,438 - Synpcc7942_0531 0.14 -1.4 515,682 + Synpcc7942_0531 0.43 +0.1 516,124 - -2.3 516,136 - -0.9 516,141 - +1.1 516,235 + -2.4 516,285 - -1.3
Or see this region's nucleotide sequence