Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0499 and Synpcc7942_0500 are separated by 99 nucleotides Synpcc7942_0500 and Synpcc7942_0501 are separated by 9 nucleotides Synpcc7942_0501 and Synpcc7942_0502 are separated by 24 nucleotides
Synpcc7942_0499: Synpcc7942_0499 - hydroxyneurosporene-O-methyltransferase, at 487,375 to 488,370
_0499
Synpcc7942_0500: Synpcc7942_0500 - hypothetical protein, at 488,470 to 488,823
_0500
Synpcc7942_0501: Synpcc7942_0501 - Nucleoside-diphosphate-sugar epimerase-like, at 488,833 to 489,483
_0501
Synpcc7942_0502: Synpcc7942_0502 - hypothetical protein, at 489,508 to 490,074
_0502
Position (kb) 488
489 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 487.500 kb on - strand, within Synpcc7942_0499 at 487.534 kb on - strand, within Synpcc7942_0499 at 487.544 kb on - strand, within Synpcc7942_0499 at 487.568 kb on - strand, within Synpcc7942_0499 at 487.575 kb on + strand, within Synpcc7942_0499 at 487.596 kb on + strand, within Synpcc7942_0499 at 487.640 kb on - strand, within Synpcc7942_0499 at 487.651 kb on - strand, within Synpcc7942_0499 at 487.677 kb on + strand, within Synpcc7942_0499 at 487.697 kb on + strand, within Synpcc7942_0499 at 487.712 kb on + strand, within Synpcc7942_0499 at 487.722 kb on + strand, within Synpcc7942_0499 at 487.742 kb on - strand, within Synpcc7942_0499 at 487.743 kb on - strand, within Synpcc7942_0499 at 487.803 kb on + strand, within Synpcc7942_0499 at 487.812 kb on - strand, within Synpcc7942_0499 at 487.902 kb on - strand, within Synpcc7942_0499 at 487.902 kb on - strand, within Synpcc7942_0499 at 487.914 kb on - strand, within Synpcc7942_0499 at 487.918 kb on - strand, within Synpcc7942_0499 at 487.925 kb on - strand, within Synpcc7942_0499 at 487.929 kb on - strand, within Synpcc7942_0499 at 487.966 kb on + strand, within Synpcc7942_0499 at 487.969 kb on - strand, within Synpcc7942_0499 at 487.989 kb on - strand, within Synpcc7942_0499 at 487.997 kb on + strand, within Synpcc7942_0499 at 487.997 kb on - strand, within Synpcc7942_0499 at 488.005 kb on - strand, within Synpcc7942_0499 at 488.005 kb on - strand, within Synpcc7942_0499 at 488.044 kb on - strand, within Synpcc7942_0499 at 488.060 kb on + strand, within Synpcc7942_0499 at 488.065 kb on - strand, within Synpcc7942_0499 at 488.067 kb on + strand, within Synpcc7942_0499 at 488.081 kb on + strand, within Synpcc7942_0499 at 488.101 kb on + strand, within Synpcc7942_0499 at 488.102 kb on + strand, within Synpcc7942_0499 at 488.102 kb on + strand, within Synpcc7942_0499 at 488.102 kb on + strand, within Synpcc7942_0499 at 488.107 kb on + strand, within Synpcc7942_0499 at 488.110 kb on - strand, within Synpcc7942_0499 at 488.116 kb on - strand, within Synpcc7942_0499 at 488.127 kb on + strand, within Synpcc7942_0499 at 488.135 kb on - strand, within Synpcc7942_0499 at 488.146 kb on - strand, within Synpcc7942_0499 at 488.146 kb on - strand, within Synpcc7942_0499 at 488.152 kb on - strand, within Synpcc7942_0499 at 488.159 kb on + strand, within Synpcc7942_0499 at 488.167 kb on - strand, within Synpcc7942_0499 at 488.167 kb on - strand, within Synpcc7942_0499 at 488.188 kb on + strand at 488.196 kb on - strand, within Synpcc7942_0499 at 488.196 kb on - strand, within Synpcc7942_0499 at 488.207 kb on + strand, within Synpcc7942_0499 at 488.209 kb on + strand, within Synpcc7942_0499 at 488.210 kb on - strand, within Synpcc7942_0499 at 488.217 kb on - strand, within Synpcc7942_0499 at 488.217 kb on - strand, within Synpcc7942_0499 at 488.231 kb on + strand, within Synpcc7942_0499 at 488.250 kb on - strand, within Synpcc7942_0499 at 488.258 kb on - strand, within Synpcc7942_0499 at 488.269 kb on + strand, within Synpcc7942_0499 at 488.290 kb on + strand at 488.303 kb on + strand at 488.305 kb on + strand at 488.305 kb on + strand at 488.305 kb on + strand at 488.311 kb on - strand at 488.313 kb on - strand at 488.331 kb on + strand at 488.332 kb on + strand at 488.334 kb on - strand at 488.348 kb on + strand at 488.401 kb on + strand at 488.408 kb on + strand at 488.416 kb on - strand at 488.416 kb on - strand at 488.416 kb on - strand at 488.454 kb on + strand at 488.454 kb on + strand at 488.454 kb on + strand at 488.454 kb on + strand at 488.454 kb on + strand at 488.454 kb on + strand at 488.462 kb on - strand at 488.462 kb on - strand at 488.468 kb on + strand at 488.502 kb on + strand at 488.541 kb on - strand, within Synpcc7942_0500 at 488.543 kb on + strand, within Synpcc7942_0500 at 488.547 kb on - strand, within Synpcc7942_0500 at 488.549 kb on + strand, within Synpcc7942_0500 at 488.551 kb on - strand, within Synpcc7942_0500 at 488.551 kb on - strand, within Synpcc7942_0500 at 488.565 kb on + strand, within Synpcc7942_0500 at 488.573 kb on - strand, within Synpcc7942_0500 at 488.579 kb on - strand, within Synpcc7942_0500 at 488.624 kb on - strand, within Synpcc7942_0500 at 488.629 kb on - strand, within Synpcc7942_0500 at 488.652 kb on + strand, within Synpcc7942_0500 at 488.660 kb on - strand, within Synpcc7942_0500 at 488.700 kb on + strand, within Synpcc7942_0500 at 488.700 kb on + strand, within Synpcc7942_0500 at 488.706 kb on + strand, within Synpcc7942_0500 at 488.711 kb on + strand, within Synpcc7942_0500 at 488.714 kb on - strand, within Synpcc7942_0500 at 488.714 kb on - strand, within Synpcc7942_0500 at 488.714 kb on - strand, within Synpcc7942_0500 at 488.714 kb on - strand, within Synpcc7942_0500 at 488.714 kb on - strand, within Synpcc7942_0500 at 488.714 kb on - strand, within Synpcc7942_0500 at 488.717 kb on + strand, within Synpcc7942_0500 at 488.719 kb on - strand, within Synpcc7942_0500 at 488.745 kb on + strand, within Synpcc7942_0500 at 488.745 kb on + strand, within Synpcc7942_0500 at 488.745 kb on + strand, within Synpcc7942_0500 at 488.745 kb on + strand, within Synpcc7942_0500 at 488.753 kb on - strand, within Synpcc7942_0500 at 488.753 kb on - strand, within Synpcc7942_0500 at 488.753 kb on - strand, within Synpcc7942_0500 at 488.753 kb on - strand, within Synpcc7942_0500 at 488.759 kb on - strand, within Synpcc7942_0500 at 488.764 kb on + strand, within Synpcc7942_0500 at 488.772 kb on - strand, within Synpcc7942_0500 at 488.800 kb on + strand at 488.813 kb on + strand at 488.837 kb on + strand at 488.845 kb on - strand at 488.845 kb on - strand at 488.845 kb on - strand at 488.855 kb on - strand at 488.871 kb on + strand at 488.871 kb on + strand at 488.879 kb on - strand at 488.879 kb on - strand at 488.935 kb on - strand, within Synpcc7942_0501 at 488.948 kb on + strand, within Synpcc7942_0501 at 489.030 kb on + strand, within Synpcc7942_0501 at 489.050 kb on + strand, within Synpcc7942_0501 at 489.050 kb on + strand, within Synpcc7942_0501 at 489.050 kb on + strand, within Synpcc7942_0501 at 489.050 kb on + strand, within Synpcc7942_0501 at 489.050 kb on + strand, within Synpcc7942_0501 at 489.050 kb on + strand, within Synpcc7942_0501 at 489.050 kb on + strand, within Synpcc7942_0501 at 489.050 kb on + strand, within Synpcc7942_0501 at 489.050 kb on + strand, within Synpcc7942_0501 at 489.058 kb on - strand, within Synpcc7942_0501 at 489.058 kb on - strand, within Synpcc7942_0501 at 489.058 kb on - strand, within Synpcc7942_0501 at 489.076 kb on + strand, within Synpcc7942_0501 at 489.077 kb on - strand, within Synpcc7942_0501 at 489.094 kb on - strand, within Synpcc7942_0501 at 489.095 kb on + strand, within Synpcc7942_0501 at 489.103 kb on - strand, within Synpcc7942_0501 at 489.105 kb on + strand, within Synpcc7942_0501 at 489.105 kb on + strand, within Synpcc7942_0501 at 489.105 kb on + strand, within Synpcc7942_0501 at 489.110 kb on + strand, within Synpcc7942_0501 at 489.110 kb on + strand, within Synpcc7942_0501 at 489.113 kb on - strand, within Synpcc7942_0501 at 489.120 kb on + strand, within Synpcc7942_0501 at 489.141 kb on + strand, within Synpcc7942_0501 at 489.160 kb on + strand, within Synpcc7942_0501 at 489.163 kb on - strand, within Synpcc7942_0501 at 489.168 kb on - strand, within Synpcc7942_0501 at 489.168 kb on - strand, within Synpcc7942_0501 at 489.168 kb on - strand, within Synpcc7942_0501 at 489.183 kb on + strand, within Synpcc7942_0501 at 489.201 kb on - strand at 489.202 kb on + strand, within Synpcc7942_0501 at 489.218 kb on - strand, within Synpcc7942_0501 at 489.230 kb on + strand, within Synpcc7942_0501 at 489.230 kb on + strand, within Synpcc7942_0501 at 489.230 kb on + strand, within Synpcc7942_0501 at 489.265 kb on + strand, within Synpcc7942_0501 at 489.269 kb on - strand, within Synpcc7942_0501 at 489.289 kb on + strand, within Synpcc7942_0501 at 489.289 kb on + strand, within Synpcc7942_0501 at 489.318 kb on - strand, within Synpcc7942_0501 at 489.348 kb on + strand, within Synpcc7942_0501 at 489.362 kb on + strand, within Synpcc7942_0501 at 489.378 kb on + strand at 489.401 kb on + strand, within Synpcc7942_0501 at 489.439 kb on + strand at 489.514 kb on - strand at 489.516 kb on - strand at 489.550 kb on + strand at 489.563 kb on - strand at 489.566 kb on - strand, within Synpcc7942_0502 at 489.605 kb on - strand, within Synpcc7942_0502 at 489.605 kb on - strand, within Synpcc7942_0502 at 489.616 kb on + strand, within Synpcc7942_0502 at 489.621 kb on + strand, within Synpcc7942_0502 at 489.624 kb on - strand, within Synpcc7942_0502 at 489.629 kb on - strand, within Synpcc7942_0502 at 489.629 kb on - strand, within Synpcc7942_0502 at 489.629 kb on - strand, within Synpcc7942_0502 at 489.629 kb on - strand, within Synpcc7942_0502 at 489.689 kb on + strand, within Synpcc7942_0502 at 489.689 kb on + strand, within Synpcc7942_0502 at 489.697 kb on - strand, within Synpcc7942_0502 at 489.697 kb on - strand, within Synpcc7942_0502 at 489.697 kb on - strand at 489.704 kb on + strand, within Synpcc7942_0502 at 489.707 kb on - strand, within Synpcc7942_0502 at 489.755 kb on + strand, within Synpcc7942_0502 at 489.755 kb on + strand, within Synpcc7942_0502 at 489.763 kb on - strand, within Synpcc7942_0502 at 489.763 kb on - strand, within Synpcc7942_0502 at 489.763 kb on - strand, within Synpcc7942_0502 at 489.802 kb on - strand, within Synpcc7942_0502 at 489.804 kb on - strand, within Synpcc7942_0502 at 489.814 kb on - strand, within Synpcc7942_0502 at 489.814 kb on - strand, within Synpcc7942_0502 at 489.821 kb on + strand, within Synpcc7942_0502 at 489.821 kb on + strand, within Synpcc7942_0502
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 487,500 - Synpcc7942_0499 0.13 -1.2 487,534 - Synpcc7942_0499 0.16 +3.3 487,544 - Synpcc7942_0499 0.17 -1.7 487,568 - Synpcc7942_0499 0.19 -0.6 487,575 + Synpcc7942_0499 0.20 +1.7 487,596 + Synpcc7942_0499 0.22 -1.4 487,640 - Synpcc7942_0499 0.27 +1.2 487,651 - Synpcc7942_0499 0.28 -1.2 487,677 + Synpcc7942_0499 0.30 -2.3 487,697 + Synpcc7942_0499 0.32 -1.2 487,712 + Synpcc7942_0499 0.34 -2.2 487,722 + Synpcc7942_0499 0.35 -1.1 487,742 - Synpcc7942_0499 0.37 -2.6 487,743 - Synpcc7942_0499 0.37 +0.1 487,803 + Synpcc7942_0499 0.43 -0.4 487,812 - Synpcc7942_0499 0.44 -0.9 487,902 - Synpcc7942_0499 0.53 +0.1 487,902 - Synpcc7942_0499 0.53 -1.4 487,914 - Synpcc7942_0499 0.54 +0.0 487,918 - Synpcc7942_0499 0.55 -2.0 487,925 - Synpcc7942_0499 0.55 +0.1 487,929 - Synpcc7942_0499 0.56 +5.3 487,966 + Synpcc7942_0499 0.59 +0.8 487,969 - Synpcc7942_0499 0.60 +0.6 487,989 - Synpcc7942_0499 0.62 -3.9 487,997 + Synpcc7942_0499 0.62 -1.2 487,997 - Synpcc7942_0499 0.62 +2.4 488,005 - Synpcc7942_0499 0.63 +0.1 488,005 - Synpcc7942_0499 0.63 -0.6 488,044 - Synpcc7942_0499 0.67 +0.6 488,060 + Synpcc7942_0499 0.69 -0.4 488,065 - Synpcc7942_0499 0.69 -2.3 488,067 + Synpcc7942_0499 0.69 -0.2 488,081 + Synpcc7942_0499 0.71 +1.1 488,101 + Synpcc7942_0499 0.73 -0.4 488,102 + Synpcc7942_0499 0.73 -1.7 488,102 + Synpcc7942_0499 0.73 -0.4 488,102 + Synpcc7942_0499 0.73 -1.2 488,107 + Synpcc7942_0499 0.73 +4.0 488,110 - Synpcc7942_0499 0.74 -0.4 488,116 - Synpcc7942_0499 0.74 -2.6 488,127 + Synpcc7942_0499 0.76 -1.2 488,135 - Synpcc7942_0499 0.76 +0.8 488,146 - Synpcc7942_0499 0.77 -0.9 488,146 - Synpcc7942_0499 0.77 -0.3 488,152 - Synpcc7942_0499 0.78 +1.1 488,159 + Synpcc7942_0499 0.79 -2.3 488,167 - Synpcc7942_0499 0.80 -0.9 488,167 - Synpcc7942_0499 0.80 +1.5 488,188 + +0.1 488,196 - Synpcc7942_0499 0.82 +1.7 488,196 - Synpcc7942_0499 0.82 +2.6 488,207 + Synpcc7942_0499 0.84 -0.9 488,209 + Synpcc7942_0499 0.84 +2.0 488,210 - Synpcc7942_0499 0.84 -0.0 488,217 - Synpcc7942_0499 0.85 +0.3 488,217 - Synpcc7942_0499 0.85 -1.2 488,231 + Synpcc7942_0499 0.86 -0.1 488,250 - Synpcc7942_0499 0.88 +4.1 488,258 - Synpcc7942_0499 0.89 -1.2 488,269 + Synpcc7942_0499 0.90 -0.9 488,290 + +0.4 488,303 + +2.6 488,305 + -0.9 488,305 + +0.1 488,305 + +0.1 488,311 - -2.7 488,313 - +1.6 488,331 + -1.2 488,332 + -2.0 488,334 - -0.9 488,348 + +1.6 488,401 + +0.1 488,408 + -2.6 488,416 - -1.7 488,416 - +0.4 488,416 - +0.3 488,454 + -0.1 488,454 + +1.8 488,454 + -2.9 488,454 + -2.8 488,454 + -2.0 488,454 + -1.4 488,462 - -1.2 488,462 - +1.5 488,468 + +0.3 488,502 + -1.4 488,541 - Synpcc7942_0500 0.20 +1.0 488,543 + Synpcc7942_0500 0.21 +2.7 488,547 - Synpcc7942_0500 0.22 -0.9 488,549 + Synpcc7942_0500 0.22 +2.2 488,551 - Synpcc7942_0500 0.23 +0.7 488,551 - Synpcc7942_0500 0.23 -0.9 488,565 + Synpcc7942_0500 0.27 +3.0 488,573 - Synpcc7942_0500 0.29 -0.3 488,579 - Synpcc7942_0500 0.31 +0.1 488,624 - Synpcc7942_0500 0.44 +0.3 488,629 - Synpcc7942_0500 0.45 +1.6 488,652 + Synpcc7942_0500 0.51 +0.1 488,660 - Synpcc7942_0500 0.54 -2.2 488,700 + Synpcc7942_0500 0.65 -0.4 488,700 + Synpcc7942_0500 0.65 +2.0 488,706 + Synpcc7942_0500 0.67 +2.5 488,711 + Synpcc7942_0500 0.68 +1.5 488,714 - Synpcc7942_0500 0.69 +2.7 488,714 - Synpcc7942_0500 0.69 +3.7 488,714 - Synpcc7942_0500 0.69 +1.1 488,714 - Synpcc7942_0500 0.69 -1.2 488,714 - Synpcc7942_0500 0.69 -1.4 488,714 - Synpcc7942_0500 0.69 -1.9 488,717 + Synpcc7942_0500 0.70 -1.2 488,719 - Synpcc7942_0500 0.70 -1.2 488,745 + Synpcc7942_0500 0.78 -1.3 488,745 + Synpcc7942_0500 0.78 -0.4 488,745 + Synpcc7942_0500 0.78 +1.1 488,745 + Synpcc7942_0500 0.78 -0.6 488,753 - Synpcc7942_0500 0.80 +0.6 488,753 - Synpcc7942_0500 0.80 +3.0 488,753 - Synpcc7942_0500 0.80 +3.1 488,753 - Synpcc7942_0500 0.80 +0.9 488,759 - Synpcc7942_0500 0.82 +2.4 488,764 + Synpcc7942_0500 0.83 +1.1 488,772 - Synpcc7942_0500 0.85 +0.1 488,800 + +1.1 488,813 + -0.2 488,837 + +0.8 488,845 - +1.1 488,845 - +0.1 488,845 - -0.9 488,855 - -0.7 488,871 + +0.4 488,871 + +0.1 488,879 - -2.3 488,879 - -1.3 488,935 - Synpcc7942_0501 0.16 +1.1 488,948 + Synpcc7942_0501 0.18 +1.1 489,030 + Synpcc7942_0501 0.30 -2.8 489,050 + Synpcc7942_0501 0.33 +1.1 489,050 + Synpcc7942_0501 0.33 -1.4 489,050 + Synpcc7942_0501 0.33 +0.9 489,050 + Synpcc7942_0501 0.33 -3.7 489,050 + Synpcc7942_0501 0.33 +0.1 489,050 + Synpcc7942_0501 0.33 -2.9 489,050 + Synpcc7942_0501 0.33 -1.2 489,050 + Synpcc7942_0501 0.33 +1.1 489,050 + Synpcc7942_0501 0.33 -1.8 489,058 - Synpcc7942_0501 0.35 +0.1 489,058 - Synpcc7942_0501 0.35 +1.1 489,058 - Synpcc7942_0501 0.35 -1.4 489,076 + Synpcc7942_0501 0.37 -0.9 489,077 - Synpcc7942_0501 0.37 +1.1 489,094 - Synpcc7942_0501 0.40 -0.4 489,095 + Synpcc7942_0501 0.40 -2.6 489,103 - Synpcc7942_0501 0.41 +1.1 489,105 + Synpcc7942_0501 0.42 -0.1 489,105 + Synpcc7942_0501 0.42 +0.1 489,105 + Synpcc7942_0501 0.42 -0.1 489,110 + Synpcc7942_0501 0.43 +1.1 489,110 + Synpcc7942_0501 0.43 -1.4 489,113 - Synpcc7942_0501 0.43 -1.7 489,120 + Synpcc7942_0501 0.44 +3.7 489,141 + Synpcc7942_0501 0.47 -2.8 489,160 + Synpcc7942_0501 0.50 +3.8 489,163 - Synpcc7942_0501 0.51 -1.7 489,168 - Synpcc7942_0501 0.51 -2.0 489,168 - Synpcc7942_0501 0.51 +0.1 489,168 - Synpcc7942_0501 0.51 +2.4 489,183 + Synpcc7942_0501 0.54 +1.6 489,201 - +1.1 489,202 + Synpcc7942_0501 0.57 -1.4 489,218 - Synpcc7942_0501 0.59 -0.9 489,230 + Synpcc7942_0501 0.61 +1.7 489,230 + Synpcc7942_0501 0.61 +1.7 489,230 + Synpcc7942_0501 0.61 +0.5 489,265 + Synpcc7942_0501 0.66 -1.2 489,269 - Synpcc7942_0501 0.67 -1.7 489,289 + Synpcc7942_0501 0.70 +1.1 489,289 + Synpcc7942_0501 0.70 +1.1 489,318 - Synpcc7942_0501 0.75 -1.4 489,348 + Synpcc7942_0501 0.79 -0.4 489,362 + Synpcc7942_0501 0.81 +1.1 489,378 + +1.1 489,401 + Synpcc7942_0501 0.87 +1.1 489,439 + -1.7 489,514 - +2.4 489,516 - +1.4 489,550 + -0.9 489,563 - +0.6 489,566 - Synpcc7942_0502 0.10 +0.3 489,605 - Synpcc7942_0502 0.17 -0.3 489,605 - Synpcc7942_0502 0.17 +0.6 489,616 + Synpcc7942_0502 0.19 +0.1 489,621 + Synpcc7942_0502 0.20 +5.8 489,624 - Synpcc7942_0502 0.20 +3.0 489,629 - Synpcc7942_0502 0.21 +0.6 489,629 - Synpcc7942_0502 0.21 +3.0 489,629 - Synpcc7942_0502 0.21 +1.1 489,629 - Synpcc7942_0502 0.21 +4.1 489,689 + Synpcc7942_0502 0.32 +1.5 489,689 + Synpcc7942_0502 0.32 -0.6 489,697 - Synpcc7942_0502 0.33 -0.4 489,697 - Synpcc7942_0502 0.33 -1.2 489,697 - +0.1 489,704 + Synpcc7942_0502 0.35 -1.9 489,707 - Synpcc7942_0502 0.35 -1.2 489,755 + Synpcc7942_0502 0.44 +0.1 489,755 + Synpcc7942_0502 0.44 -1.7 489,763 - Synpcc7942_0502 0.45 +0.1 489,763 - Synpcc7942_0502 0.45 +0.1 489,763 - Synpcc7942_0502 0.45 -1.7 489,802 - Synpcc7942_0502 0.52 +1.7 489,804 - Synpcc7942_0502 0.52 +2.9 489,814 - Synpcc7942_0502 0.54 -1.2 489,814 - Synpcc7942_0502 0.54 -2.3 489,821 + Synpcc7942_0502 0.55 +4.8 489,821 + Synpcc7942_0502 0.55 +4.4
Or see this region's nucleotide sequence