Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0490 and Synpcc7942_0491 are separated by 259 nucleotides Synpcc7942_0491 and ribF are separated by 39 nucleotides ribF and Synpcc7942_0493 are separated by 142 nucleotides
Synpcc7942_0490: Synpcc7942_0490 - diguanylate cyclase with PAS/PAC sensor, at 477,395 to 479,440
_0490
Synpcc7942_0491: Synpcc7942_0491 - hypothetical protein, at 479,700 to 479,837
_0491
Synpcc7942_0492: ribF - bifunctional riboflavin kinase/FMN adenylyltransferase, at 479,877 to 480,824
ribF
Synpcc7942_0493: Synpcc7942_0493 - hypothetical protein, at 480,967 to 482,451
_0493
Position (kb) 479
480
481 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 479.032 kb on - strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.123 kb on - strand, within Synpcc7942_0490 at 479.125 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.193 kb on - strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.271 kb on + strand at 479.312 kb on - strand at 479.346 kb on - strand at 479.392 kb on + strand at 479.473 kb on + strand at 479.473 kb on + strand at 479.620 kb on - strand at 479.655 kb on - strand at 479.658 kb on + strand at 479.666 kb on - strand at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.762 kb on + strand, within Synpcc7942_0491 at 479.770 kb on - strand, within Synpcc7942_0491 at 479.781 kb on - strand, within Synpcc7942_0491 at 479.788 kb on + strand, within Synpcc7942_0491 at 479.804 kb on + strand, within Synpcc7942_0491 at 479.811 kb on + strand, within Synpcc7942_0491 at 479.820 kb on - strand, within Synpcc7942_0491 at 479.832 kb on - strand at 479.849 kb on - strand at 479.899 kb on + strand at 480.839 kb on - strand at 480.848 kb on + strand at 480.853 kb on + strand at 480.853 kb on + strand at 480.861 kb on - strand at 480.862 kb on - strand at 480.862 kb on - strand at 480.862 kb on - strand at 480.887 kb on + strand at 480.887 kb on + strand at 480.887 kb on + strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.910 kb on - strand at 480.913 kb on + strand at 480.936 kb on + strand at 480.977 kb on + strand at 480.977 kb on + strand at 481.096 kb on - strand at 481.099 kb on + strand at 481.135 kb on + strand, within Synpcc7942_0493 at 481.143 kb on - strand, within Synpcc7942_0493 at 481.169 kb on + strand, within Synpcc7942_0493 at 481.169 kb on + strand, within Synpcc7942_0493 at 481.251 kb on + strand, within Synpcc7942_0493 at 481.265 kb on - strand, within Synpcc7942_0493 at 481.289 kb on - strand, within Synpcc7942_0493 at 481.333 kb on + strand, within Synpcc7942_0493 at 481.357 kb on - strand, within Synpcc7942_0493 at 481.359 kb on + strand, within Synpcc7942_0493 at 481.367 kb on - strand, within Synpcc7942_0493 at 481.394 kb on + strand, within Synpcc7942_0493 at 481.419 kb on - strand, within Synpcc7942_0493 at 481.428 kb on - strand, within Synpcc7942_0493 at 481.438 kb on - strand, within Synpcc7942_0493 at 481.473 kb on + strand, within Synpcc7942_0493 at 481.473 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.533 kb on - strand, within Synpcc7942_0493 at 481.597 kb on - strand, within Synpcc7942_0493 at 481.597 kb on - strand, within Synpcc7942_0493 at 481.674 kb on + strand, within Synpcc7942_0493 at 481.682 kb on - strand, within Synpcc7942_0493 at 481.689 kb on + strand, within Synpcc7942_0493 at 481.697 kb on - strand, within Synpcc7942_0493 at 481.702 kb on - strand, within Synpcc7942_0493 at 481.708 kb on - strand, within Synpcc7942_0493 at 481.709 kb on - strand, within Synpcc7942_0493 at 481.783 kb on - strand, within Synpcc7942_0493
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 479,032 - Synpcc7942_0490 0.80 +1.9 479,116 + Synpcc7942_0490 0.84 -1.4 479,116 + Synpcc7942_0490 0.84 +0.4 479,123 - Synpcc7942_0490 0.84 -2.3 479,125 + Synpcc7942_0490 0.85 -2.0 479,185 + Synpcc7942_0490 0.87 +0.1 479,185 + Synpcc7942_0490 0.87 +2.8 479,185 + Synpcc7942_0490 0.87 +0.6 479,193 - Synpcc7942_0490 0.88 +0.3 479,220 + Synpcc7942_0490 0.89 +2.4 479,220 + Synpcc7942_0490 0.89 +0.1 479,271 + +1.1 479,312 - -3.7 479,346 - -0.3 479,392 + -1.4 479,473 + -1.3 479,473 + -2.3 479,620 - -0.4 479,655 - +1.5 479,658 + +0.1 479,666 - +0.1 479,737 - Synpcc7942_0491 0.27 -1.7 479,737 - Synpcc7942_0491 0.27 -0.4 479,737 - Synpcc7942_0491 0.27 +0.7 479,737 - Synpcc7942_0491 0.27 -1.2 479,762 + Synpcc7942_0491 0.45 -2.0 479,770 - Synpcc7942_0491 0.51 +3.4 479,781 - Synpcc7942_0491 0.59 +1.4 479,788 + Synpcc7942_0491 0.64 -1.3 479,804 + Synpcc7942_0491 0.75 -0.3 479,811 + Synpcc7942_0491 0.80 +0.1 479,820 - Synpcc7942_0491 0.87 -0.7 479,832 - +1.9 479,849 - +0.1 479,899 + -2.2 480,839 - +0.1 480,848 + -2.9 480,853 + -0.9 480,853 + +2.8 480,861 - -0.2 480,862 - -0.9 480,862 - +4.8 480,862 - -2.2 480,887 + +0.6 480,887 + -1.2 480,887 + -2.6 480,895 - -1.6 480,895 - -2.4 480,895 - +1.6 480,895 - -1.5 480,895 - -0.9 480,910 - -5.8 480,913 + -1.4 480,936 + +1.1 480,977 + -2.0 480,977 + +3.3 481,096 - -2.7 481,099 + -1.9 481,135 + Synpcc7942_0493 0.11 -2.9 481,143 - Synpcc7942_0493 0.12 +1.2 481,169 + Synpcc7942_0493 0.14 +0.5 481,169 + Synpcc7942_0493 0.14 -1.4 481,251 + Synpcc7942_0493 0.19 -0.7 481,265 - Synpcc7942_0493 0.20 -0.4 481,289 - Synpcc7942_0493 0.22 -0.9 481,333 + Synpcc7942_0493 0.25 -1.7 481,357 - Synpcc7942_0493 0.26 -0.5 481,359 + Synpcc7942_0493 0.26 +3.1 481,367 - Synpcc7942_0493 0.27 -2.3 481,394 + Synpcc7942_0493 0.29 -1.4 481,419 - Synpcc7942_0493 0.30 -0.9 481,428 - Synpcc7942_0493 0.31 -1.8 481,438 - Synpcc7942_0493 0.32 -2.0 481,473 + Synpcc7942_0493 0.34 -1.9 481,473 + Synpcc7942_0493 0.34 +1.1 481,521 + Synpcc7942_0493 0.37 -1.2 481,521 + Synpcc7942_0493 0.37 -0.0 481,521 + Synpcc7942_0493 0.37 -0.9 481,521 + Synpcc7942_0493 0.37 -0.3 481,533 - Synpcc7942_0493 0.38 -0.4 481,597 - Synpcc7942_0493 0.42 -0.9 481,597 - Synpcc7942_0493 0.42 +0.7 481,674 + Synpcc7942_0493 0.48 +1.1 481,682 - Synpcc7942_0493 0.48 -0.9 481,689 + Synpcc7942_0493 0.49 -0.9 481,697 - Synpcc7942_0493 0.49 -1.4 481,702 - Synpcc7942_0493 0.49 +0.8 481,708 - Synpcc7942_0493 0.50 +2.4 481,709 - Synpcc7942_0493 0.50 +0.1 481,783 - Synpcc7942_0493 0.55 -1.7
Or see this region's nucleotide sequence