Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0459 and Synpcc7942_0460 are separated by 139 nucleotides Synpcc7942_0460 and Synpcc7942_0461 are separated by 96 nucleotides Synpcc7942_0461 and Synpcc7942_0462 are separated by 56 nucleotides
Synpcc7942_0459: Synpcc7942_0459 - glutathione-dependent formaldehyde dehydrogenase, at 447,057 to 448,166
_0459
Synpcc7942_0460: Synpcc7942_0460 - putative acetyltransferase, at 448,306 to 448,779
_0460
Synpcc7942_0461: Synpcc7942_0461 - hypothetical protein, at 448,876 to 449,313
_0461
Synpcc7942_0462: Synpcc7942_0462 - hypothetical protein, at 449,370 to 449,957
_0462
Position (kb) 448
449 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 447.327 kb on + strand, within Synpcc7942_0459 at 447.329 kb on - strand, within Synpcc7942_0459 at 447.342 kb on + strand, within Synpcc7942_0459 at 447.388 kb on - strand, within Synpcc7942_0459 at 447.413 kb on + strand, within Synpcc7942_0459 at 447.450 kb on - strand, within Synpcc7942_0459 at 447.474 kb on + strand, within Synpcc7942_0459 at 447.475 kb on + strand, within Synpcc7942_0459 at 447.560 kb on - strand, within Synpcc7942_0459 at 447.577 kb on - strand, within Synpcc7942_0459 at 447.579 kb on + strand, within Synpcc7942_0459 at 447.579 kb on + strand, within Synpcc7942_0459 at 447.579 kb on + strand, within Synpcc7942_0459 at 447.587 kb on - strand at 447.587 kb on - strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.627 kb on + strand, within Synpcc7942_0459 at 447.635 kb on - strand, within Synpcc7942_0459 at 447.676 kb on + strand, within Synpcc7942_0459 at 447.677 kb on + strand, within Synpcc7942_0459 at 447.678 kb on - strand, within Synpcc7942_0459 at 447.683 kb on - strand, within Synpcc7942_0459 at 447.684 kb on - strand, within Synpcc7942_0459 at 447.689 kb on - strand, within Synpcc7942_0459 at 447.732 kb on + strand, within Synpcc7942_0459 at 447.733 kb on + strand, within Synpcc7942_0459 at 447.747 kb on + strand, within Synpcc7942_0459 at 447.765 kb on + strand, within Synpcc7942_0459 at 447.773 kb on - strand, within Synpcc7942_0459 at 447.788 kb on + strand, within Synpcc7942_0459 at 447.796 kb on - strand, within Synpcc7942_0459 at 447.813 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.825 kb on + strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.833 kb on - strand, within Synpcc7942_0459 at 447.854 kb on + strand, within Synpcc7942_0459 at 447.861 kb on - strand, within Synpcc7942_0459 at 447.868 kb on + strand, within Synpcc7942_0459 at 447.893 kb on + strand, within Synpcc7942_0459 at 447.911 kb on + strand, within Synpcc7942_0459 at 447.939 kb on + strand, within Synpcc7942_0459 at 447.939 kb on + strand, within Synpcc7942_0459 at 447.940 kb on + strand, within Synpcc7942_0459 at 447.963 kb on + strand, within Synpcc7942_0459 at 447.992 kb on - strand, within Synpcc7942_0459 at 448.028 kb on + strand, within Synpcc7942_0459 at 448.036 kb on - strand, within Synpcc7942_0459 at 448.036 kb on - strand, within Synpcc7942_0459 at 448.042 kb on + strand, within Synpcc7942_0459 at 448.050 kb on - strand, within Synpcc7942_0459 at 448.094 kb on - strand at 448.094 kb on - strand at 448.138 kb on + strand at 448.146 kb on - strand at 448.177 kb on - strand at 448.196 kb on + strand at 448.245 kb on + strand at 448.251 kb on + strand at 448.251 kb on + strand at 448.275 kb on - strand at 448.275 kb on - strand at 448.296 kb on - strand at 448.309 kb on + strand at 448.329 kb on + strand at 448.329 kb on + strand at 448.329 kb on + strand at 448.341 kb on + strand at 448.341 kb on + strand at 448.346 kb on + strand at 448.346 kb on + strand at 448.346 kb on + strand at 448.354 kb on - strand, within Synpcc7942_0460 at 448.414 kb on + strand, within Synpcc7942_0460 at 448.418 kb on + strand, within Synpcc7942_0460 at 448.436 kb on - strand, within Synpcc7942_0460 at 448.436 kb on - strand, within Synpcc7942_0460 at 448.443 kb on - strand, within Synpcc7942_0460 at 448.449 kb on - strand, within Synpcc7942_0460 at 448.483 kb on - strand, within Synpcc7942_0460 at 448.510 kb on + strand, within Synpcc7942_0460 at 448.511 kb on + strand, within Synpcc7942_0460 at 448.529 kb on - strand, within Synpcc7942_0460 at 448.552 kb on - strand, within Synpcc7942_0460 at 448.610 kb on - strand, within Synpcc7942_0460 at 448.669 kb on + strand, within Synpcc7942_0460 at 448.701 kb on + strand, within Synpcc7942_0460 at 448.712 kb on + strand, within Synpcc7942_0460 at 448.772 kb on - strand at 448.779 kb on - strand at 448.818 kb on - strand at 448.841 kb on - strand at 448.847 kb on + strand at 448.849 kb on + strand at 448.849 kb on + strand at 448.895 kb on + strand at 448.895 kb on + strand at 448.896 kb on + strand at 448.896 kb on + strand at 448.953 kb on - strand, within Synpcc7942_0461 at 448.953 kb on - strand, within Synpcc7942_0461 at 448.953 kb on - strand, within Synpcc7942_0461 at 448.965 kb on - strand, within Synpcc7942_0461 at 449.131 kb on + strand, within Synpcc7942_0461 at 449.139 kb on - strand, within Synpcc7942_0461 at 449.139 kb on - strand, within Synpcc7942_0461 at 449.139 kb on - strand, within Synpcc7942_0461 at 449.141 kb on + strand, within Synpcc7942_0461 at 449.176 kb on + strand, within Synpcc7942_0461 at 449.192 kb on + strand, within Synpcc7942_0461 at 449.192 kb on + strand, within Synpcc7942_0461 at 449.195 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.225 kb on - strand, within Synpcc7942_0461 at 449.248 kb on + strand, within Synpcc7942_0461 at 449.250 kb on + strand, within Synpcc7942_0461 at 449.272 kb on + strand at 449.288 kb on + strand at 449.288 kb on + strand at 449.296 kb on - strand at 449.310 kb on + strand at 449.337 kb on + strand at 449.345 kb on - strand at 449.361 kb on + strand at 449.361 kb on - strand at 449.472 kb on + strand, within Synpcc7942_0462 at 449.480 kb on - strand, within Synpcc7942_0462 at 449.481 kb on + strand, within Synpcc7942_0462 at 449.499 kb on - strand, within Synpcc7942_0462 at 449.509 kb on + strand, within Synpcc7942_0462 at 449.509 kb on + strand, within Synpcc7942_0462 at 449.517 kb on - strand, within Synpcc7942_0462 at 449.519 kb on + strand, within Synpcc7942_0462 at 449.532 kb on - strand, within Synpcc7942_0462 at 449.534 kb on - strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.610 kb on - strand, within Synpcc7942_0462 at 449.610 kb on - strand, within Synpcc7942_0462 at 449.617 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.645 kb on - strand, within Synpcc7942_0462 at 449.645 kb on - strand, within Synpcc7942_0462 at 449.652 kb on + strand, within Synpcc7942_0462 at 449.664 kb on + strand, within Synpcc7942_0462 at 449.671 kb on + strand, within Synpcc7942_0462 at 449.672 kb on - strand, within Synpcc7942_0462 at 449.672 kb on - strand, within Synpcc7942_0462 at 449.683 kb on + strand, within Synpcc7942_0462 at 449.685 kb on + strand, within Synpcc7942_0462 at 449.731 kb on - strand, within Synpcc7942_0462 at 449.736 kb on + strand, within Synpcc7942_0462
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 447,327 + Synpcc7942_0459 0.24 -0.4 447,329 - Synpcc7942_0459 0.25 +0.2 447,342 + Synpcc7942_0459 0.26 +0.2 447,388 - Synpcc7942_0459 0.30 -1.9 447,413 + Synpcc7942_0459 0.32 -1.6 447,450 - Synpcc7942_0459 0.35 -1.1 447,474 + Synpcc7942_0459 0.38 -2.8 447,475 + Synpcc7942_0459 0.38 -1.8 447,560 - Synpcc7942_0459 0.45 -0.8 447,577 - Synpcc7942_0459 0.47 -1.4 447,579 + Synpcc7942_0459 0.47 -0.4 447,579 + Synpcc7942_0459 0.47 -1.9 447,579 + Synpcc7942_0459 0.47 -0.0 447,587 - -0.8 447,587 - Synpcc7942_0459 0.48 -0.4 447,627 + Synpcc7942_0459 0.51 -1.6 447,627 + Synpcc7942_0459 0.51 -4.3 447,627 + Synpcc7942_0459 0.51 -1.9 447,627 + Synpcc7942_0459 0.51 -0.8 447,627 + Synpcc7942_0459 0.51 -1.8 447,635 - Synpcc7942_0459 0.52 -0.4 447,676 + Synpcc7942_0459 0.56 +1.4 447,677 + Synpcc7942_0459 0.56 -1.8 447,678 - Synpcc7942_0459 0.56 -1.1 447,683 - Synpcc7942_0459 0.56 -0.1 447,684 - Synpcc7942_0459 0.56 -0.1 447,689 - Synpcc7942_0459 0.57 +1.2 447,732 + Synpcc7942_0459 0.61 -1.2 447,733 + Synpcc7942_0459 0.61 -1.6 447,747 + Synpcc7942_0459 0.62 -1.8 447,765 + Synpcc7942_0459 0.64 -1.6 447,773 - Synpcc7942_0459 0.65 +0.6 447,788 + Synpcc7942_0459 0.66 -3.2 447,796 - Synpcc7942_0459 0.67 -1.9 447,813 + Synpcc7942_0459 0.68 -2.5 447,825 + Synpcc7942_0459 0.69 -1.7 447,825 + Synpcc7942_0459 0.69 -1.6 447,825 + Synpcc7942_0459 0.69 -1.5 447,825 + Synpcc7942_0459 0.69 -1.8 447,825 + Synpcc7942_0459 0.69 -1.4 447,825 + Synpcc7942_0459 0.69 -0.4 447,825 + Synpcc7942_0459 0.69 +1.2 447,833 - Synpcc7942_0459 0.70 -1.9 447,833 - Synpcc7942_0459 0.70 +1.2 447,833 - Synpcc7942_0459 0.70 -0.8 447,833 - Synpcc7942_0459 0.70 -2.7 447,833 - Synpcc7942_0459 0.70 -2.8 447,833 - Synpcc7942_0459 0.70 -1.8 447,854 + Synpcc7942_0459 0.72 +1.2 447,861 - Synpcc7942_0459 0.72 -1.4 447,868 + Synpcc7942_0459 0.73 +1.2 447,893 + Synpcc7942_0459 0.75 -1.8 447,911 + Synpcc7942_0459 0.77 +1.2 447,939 + Synpcc7942_0459 0.79 +1.2 447,939 + Synpcc7942_0459 0.79 -1.8 447,940 + Synpcc7942_0459 0.80 -0.6 447,963 + Synpcc7942_0459 0.82 -1.8 447,992 - Synpcc7942_0459 0.84 -0.8 448,028 + Synpcc7942_0459 0.87 +0.2 448,036 - Synpcc7942_0459 0.88 -0.4 448,036 - Synpcc7942_0459 0.88 +1.2 448,042 + Synpcc7942_0459 0.89 -5.2 448,050 - Synpcc7942_0459 0.89 -2.1 448,094 - -0.4 448,094 - -0.4 448,138 + -2.9 448,146 - -1.6 448,177 - +0.2 448,196 + +0.2 448,245 + -0.4 448,251 + +0.0 448,251 + -0.4 448,275 - +4.5 448,275 - +0.0 448,296 - -2.4 448,309 + -1.9 448,329 + -1.6 448,329 + +3.4 448,329 + -0.4 448,341 + -0.8 448,341 + -0.4 448,346 + -0.8 448,346 + +2.4 448,346 + +2.8 448,354 - Synpcc7942_0460 0.10 +1.6 448,414 + Synpcc7942_0460 0.23 +0.1 448,418 + Synpcc7942_0460 0.24 -2.6 448,436 - Synpcc7942_0460 0.27 +0.9 448,436 - Synpcc7942_0460 0.27 -1.8 448,443 - Synpcc7942_0460 0.29 +1.1 448,449 - Synpcc7942_0460 0.30 +3.1 448,483 - Synpcc7942_0460 0.37 -2.4 448,510 + Synpcc7942_0460 0.43 -0.8 448,511 + Synpcc7942_0460 0.43 +1.8 448,529 - Synpcc7942_0460 0.47 +3.1 448,552 - Synpcc7942_0460 0.52 -0.5 448,610 - Synpcc7942_0460 0.64 +1.3 448,669 + Synpcc7942_0460 0.77 -0.8 448,701 + Synpcc7942_0460 0.83 +1.0 448,712 + Synpcc7942_0460 0.86 -3.5 448,772 - -0.4 448,779 - +4.0 448,818 - +1.2 448,841 - -2.9 448,847 + -1.9 448,849 + +1.8 448,849 + +0.2 448,895 + +1.6 448,895 + -0.4 448,896 + -1.8 448,896 + -0.4 448,953 - Synpcc7942_0461 0.18 +1.3 448,953 - Synpcc7942_0461 0.18 +4.8 448,953 - Synpcc7942_0461 0.18 +0.9 448,965 - Synpcc7942_0461 0.20 -0.2 449,131 + Synpcc7942_0461 0.58 +0.0 449,139 - Synpcc7942_0461 0.60 -4.2 449,139 - Synpcc7942_0461 0.60 +0.2 449,139 - Synpcc7942_0461 0.60 -1.5 449,141 + Synpcc7942_0461 0.61 -1.1 449,176 + Synpcc7942_0461 0.68 -0.8 449,192 + Synpcc7942_0461 0.72 -2.6 449,192 + Synpcc7942_0461 0.72 -0.4 449,195 - Synpcc7942_0461 0.73 +1.6 449,200 - Synpcc7942_0461 0.74 +1.2 449,200 - Synpcc7942_0461 0.74 +1.6 449,200 - Synpcc7942_0461 0.74 +3.2 449,200 - Synpcc7942_0461 0.74 +3.9 449,200 - Synpcc7942_0461 0.74 -2.2 449,200 - Synpcc7942_0461 0.74 +1.9 449,200 - Synpcc7942_0461 0.74 -1.1 449,200 - Synpcc7942_0461 0.74 +2.8 449,225 - Synpcc7942_0461 0.80 +0.2 449,248 + Synpcc7942_0461 0.85 -2.2 449,250 + Synpcc7942_0461 0.85 +0.9 449,272 + +2.8 449,288 + +0.5 449,288 + -1.1 449,296 - +0.2 449,310 + +0.2 449,337 + +1.8 449,345 - -1.4 449,361 + -1.8 449,361 - -0.4 449,472 + Synpcc7942_0462 0.17 +2.2 449,480 - Synpcc7942_0462 0.19 +2.7 449,481 + Synpcc7942_0462 0.19 -1.1 449,499 - Synpcc7942_0462 0.22 -2.5 449,509 + Synpcc7942_0462 0.24 +3.5 449,509 + Synpcc7942_0462 0.24 -2.6 449,517 - Synpcc7942_0462 0.25 +2.7 449,519 + Synpcc7942_0462 0.25 -0.1 449,532 - Synpcc7942_0462 0.28 -1.6 449,534 - Synpcc7942_0462 0.28 +1.2 449,602 + Synpcc7942_0462 0.39 +0.8 449,602 + Synpcc7942_0462 0.39 -1.6 449,602 + Synpcc7942_0462 0.39 -0.4 449,610 - Synpcc7942_0462 0.41 +0.9 449,610 - Synpcc7942_0462 0.41 -0.4 449,617 + Synpcc7942_0462 0.42 -0.1 449,637 + Synpcc7942_0462 0.45 -0.8 449,637 + Synpcc7942_0462 0.45 +1.2 449,637 + Synpcc7942_0462 0.45 -1.6 449,637 + Synpcc7942_0462 0.45 +0.4 449,645 - Synpcc7942_0462 0.47 +0.1 449,645 - Synpcc7942_0462 0.47 -3.5 449,652 + Synpcc7942_0462 0.48 +0.2 449,664 + Synpcc7942_0462 0.50 +2.8 449,671 + Synpcc7942_0462 0.51 +2.9 449,672 - Synpcc7942_0462 0.51 +0.1 449,672 - Synpcc7942_0462 0.51 +1.7 449,683 + Synpcc7942_0462 0.53 +1.2 449,685 + Synpcc7942_0462 0.54 -1.6 449,731 - Synpcc7942_0462 0.61 +2.4 449,736 + Synpcc7942_0462 0.62 -0.8
Or see this region's nucleotide sequence