Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0422 and Synpcc7942_0423 are separated by 106 nucleotides Synpcc7942_0423 and psbAI are separated by 258 nucleotides psbAI and Synpcc7942_0425 are separated by 108 nucleotides Synpcc7942_0425 and scpB are separated by 93 nucleotides
Synpcc7942_0422: Synpcc7942_0422 - hypothetical protein, at 412,147 to 413,289
_0422
Synpcc7942_0423: Synpcc7942_0423 - hypothetical protein, at 413,396 to 413,614
_0423
Synpcc7942_0424: psbAI - photosystem q(b) protein, at 413,873 to 414,955
psbAI
Synpcc7942_0425: Synpcc7942_0425 - hypothetical protein, at 415,064 to 415,441
_0425
Synpcc7942_0426: scpB - condensin subunit ScpB, at 415,535 to 416,086
scpB
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 412.893 kb on - strand, within Synpcc7942_0422 at 412.918 kb on - strand, within Synpcc7942_0422 at 412.945 kb on + strand, within Synpcc7942_0422 at 412.955 kb on + strand, within Synpcc7942_0422 at 412.963 kb on - strand, within Synpcc7942_0422 at 412.995 kb on + strand, within Synpcc7942_0422 at 413.027 kb on + strand, within Synpcc7942_0422 at 413.049 kb on - strand, within Synpcc7942_0422 at 413.049 kb on - strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.102 kb on - strand, within Synpcc7942_0422 at 413.103 kb on - strand, within Synpcc7942_0422 at 413.107 kb on - strand, within Synpcc7942_0422 at 413.109 kb on + strand, within Synpcc7942_0422 at 413.117 kb on - strand at 413.128 kb on + strand, within Synpcc7942_0422 at 413.136 kb on - strand, within Synpcc7942_0422 at 413.219 kb on + strand at 413.275 kb on - strand at 413.275 kb on - strand at 413.332 kb on - strand at 413.336 kb on + strand at 413.338 kb on + strand at 413.341 kb on - strand at 413.360 kb on - strand at 413.360 kb on - strand at 413.362 kb on + strand at 413.363 kb on - strand at 413.370 kb on - strand at 413.373 kb on + strand at 413.373 kb on + strand at 413.397 kb on + strand at 413.400 kb on - strand at 413.400 kb on - strand at 413.400 kb on - strand at 413.423 kb on + strand, within Synpcc7942_0423 at 413.460 kb on + strand, within Synpcc7942_0423 at 413.479 kb on + strand, within Synpcc7942_0423 at 413.487 kb on - strand, within Synpcc7942_0423 at 413.506 kb on + strand, within Synpcc7942_0423 at 413.571 kb on + strand, within Synpcc7942_0423 at 413.611 kb on + strand at 413.624 kb on + strand at 413.624 kb on + strand at 413.632 kb on - strand at 413.659 kb on - strand at 413.682 kb on + strand at 413.684 kb on + strand at 413.690 kb on - strand at 413.692 kb on + strand at 413.692 kb on + strand at 413.700 kb on - strand at 413.700 kb on - strand at 413.995 kb on + strand at 414.065 kb on - strand, within psbAI at 414.068 kb on + strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.190 kb on + strand, within psbAI at 414.283 kb on + strand, within psbAI at 414.298 kb on + strand, within psbAI at 414.325 kb on - strand, within psbAI at 414.699 kb on + strand, within psbAI at 414.710 kb on + strand, within psbAI at 414.760 kb on - strand, within psbAI at 414.838 kb on - strand, within psbAI at 415.061 kb on + strand at 415.061 kb on + strand at 415.069 kb on - strand at 415.216 kb on - strand, within Synpcc7942_0425 at 415.391 kb on + strand, within Synpcc7942_0425 at 415.393 kb on + strand, within Synpcc7942_0425 at 415.393 kb on + strand, within Synpcc7942_0425 at 415.401 kb on - strand, within Synpcc7942_0425 at 415.436 kb on - strand at 415.554 kb on + strand at 415.605 kb on + strand, within scpB at 415.607 kb on + strand, within scpB at 415.630 kb on - strand, within scpB at 415.648 kb on + strand, within scpB at 415.738 kb on - strand, within scpB at 415.738 kb on - strand, within scpB at 415.750 kb on + strand, within scpB at 415.758 kb on - strand, within scpB at 415.758 kb on - strand, within scpB at 415.758 kb on - strand, within scpB at 415.768 kb on - strand, within scpB at 415.817 kb on + strand, within scpB at 415.845 kb on + strand, within scpB at 415.879 kb on - strand, within scpB at 415.879 kb on - strand, within scpB at 415.912 kb on - strand, within scpB at 415.922 kb on + strand, within scpB
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 412,893 - Synpcc7942_0422 0.65 +2.8 412,918 - Synpcc7942_0422 0.67 +1.2 412,945 + Synpcc7942_0422 0.70 -1.2 412,955 + Synpcc7942_0422 0.71 -0.4 412,963 - Synpcc7942_0422 0.71 +2.6 412,995 + Synpcc7942_0422 0.74 +2.2 413,027 + Synpcc7942_0422 0.77 -0.2 413,049 - Synpcc7942_0422 0.79 -3.0 413,049 - Synpcc7942_0422 0.79 +0.2 413,095 + Synpcc7942_0422 0.83 -1.6 413,095 + Synpcc7942_0422 0.83 -1.2 413,095 + Synpcc7942_0422 0.83 +1.2 413,095 + Synpcc7942_0422 0.83 +5.0 413,102 - Synpcc7942_0422 0.84 +1.6 413,103 - Synpcc7942_0422 0.84 -0.8 413,107 - Synpcc7942_0422 0.84 +0.2 413,109 + Synpcc7942_0422 0.84 +0.0 413,117 - +0.6 413,128 + Synpcc7942_0422 0.86 -1.2 413,136 - Synpcc7942_0422 0.87 -2.3 413,219 + -1.8 413,275 - -3.2 413,275 - +1.2 413,332 - -1.6 413,336 + -1.2 413,338 + -1.4 413,341 - +3.1 413,360 - +1.3 413,360 - +1.2 413,362 + -1.6 413,363 - +1.2 413,370 - -1.2 413,373 + +4.8 413,373 + +2.5 413,397 + +0.2 413,400 - +0.2 413,400 - +0.2 413,400 - +3.6 413,423 + Synpcc7942_0423 0.12 -0.4 413,460 + Synpcc7942_0423 0.29 +1.2 413,479 + Synpcc7942_0423 0.38 -2.2 413,487 - Synpcc7942_0423 0.42 +0.2 413,506 + Synpcc7942_0423 0.50 -3.2 413,571 + Synpcc7942_0423 0.80 +0.9 413,611 + -1.4 413,624 + -2.5 413,624 + -0.4 413,632 - +0.9 413,659 - +2.2 413,682 + -1.4 413,684 + -0.4 413,690 - +0.2 413,692 + -0.1 413,692 + +6.2 413,700 - +3.0 413,700 - +3.3 413,995 + -0.4 414,065 - psbAI Synpcc7942_0424 0.18 +1.1 414,068 + psbAI Synpcc7942_0424 0.18 +1.6 414,089 - psbAI Synpcc7942_0424 0.20 +2.4 414,089 - psbAI Synpcc7942_0424 0.20 -0.4 414,190 + psbAI Synpcc7942_0424 0.29 +1.1 414,283 + psbAI Synpcc7942_0424 0.38 +2.3 414,298 + psbAI Synpcc7942_0424 0.39 +1.1 414,325 - psbAI Synpcc7942_0424 0.42 -0.4 414,699 + psbAI Synpcc7942_0424 0.76 +1.1 414,710 + psbAI Synpcc7942_0424 0.77 -1.4 414,760 - psbAI Synpcc7942_0424 0.82 -2.2 414,838 - psbAI Synpcc7942_0424 0.89 +2.0 415,061 + -2.8 415,061 + -1.2 415,069 - -1.4 415,216 - Synpcc7942_0425 0.40 -1.2 415,391 + Synpcc7942_0425 0.87 -0.4 415,393 + Synpcc7942_0425 0.87 -1.7 415,393 + Synpcc7942_0425 0.87 -0.9 415,401 - Synpcc7942_0425 0.89 -2.0 415,436 - +1.1 415,554 + -1.4 415,605 + scpB Synpcc7942_0426 0.13 +0.5 415,607 + scpB Synpcc7942_0426 0.13 -2.0 415,630 - scpB Synpcc7942_0426 0.17 +2.0 415,648 + scpB Synpcc7942_0426 0.20 +2.3 415,738 - scpB Synpcc7942_0426 0.37 -1.4 415,738 - scpB Synpcc7942_0426 0.37 +1.1 415,750 + scpB Synpcc7942_0426 0.39 -1.2 415,758 - scpB Synpcc7942_0426 0.40 -0.9 415,758 - scpB Synpcc7942_0426 0.40 -1.4 415,758 - scpB Synpcc7942_0426 0.40 -2.8 415,768 - scpB Synpcc7942_0426 0.42 +3.1 415,817 + scpB Synpcc7942_0426 0.51 +0.6 415,845 + scpB Synpcc7942_0426 0.56 +1.1 415,879 - scpB Synpcc7942_0426 0.62 +2.7 415,879 - scpB Synpcc7942_0426 0.62 -0.4 415,912 - scpB Synpcc7942_0426 0.68 +4.1 415,922 + scpB Synpcc7942_0426 0.70 +0.8
Or see this region's nucleotide sequence