Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prfB and holA are separated by 360 nucleotides holA and Synpcc7942_0406 are separated by 84 nucleotides Synpcc7942_0406 and psaK1 are separated by 74 nucleotides psaK1 and trpF are separated by 96 nucleotides
Synpcc7942_0404: prfB - peptide chain release factor 2, at 397,595 to 398,509
prfB
Synpcc7942_0405: holA - DNA polymerase III subunit delta, at 398,870 to 399,868
holA
Synpcc7942_0406: Synpcc7942_0406 - hypothetical protein, at 399,953 to 400,354
_0406
Synpcc7942_0407: psaK1 - photosystem I reaction center subunit X, at 400,429 to 400,671
psaK1
Synpcc7942_0408: trpF - N-(5'-phosphoribosyl)anthranilate isomerase, at 400,768 to 401,421
trpF
Position (kb) 398
399
400 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 398.703 kb on - strand at 398.738 kb on - strand at 398.745 kb on + strand at 398.745 kb on + strand at 398.746 kb on - strand at 398.753 kb on - strand at 398.753 kb on - strand at 398.753 kb on - strand at 398.770 kb on - strand at 398.772 kb on + strand at 398.777 kb on + strand at 398.777 kb on + strand at 398.785 kb on - strand at 398.786 kb on + strand at 398.794 kb on - strand at 398.794 kb on - strand at 398.795 kb on - strand at 398.795 kb on - strand at 398.815 kb on - strand at 398.839 kb on - strand at 398.855 kb on + strand at 398.874 kb on - strand at 398.875 kb on - strand at 399.868 kb on - strand at 399.905 kb on + strand at 399.929 kb on - strand at 399.951 kb on + strand at 400.348 kb on - strand at 400.369 kb on + strand at 400.435 kb on - strand at 400.435 kb on - strand at 400.435 kb on - strand at 400.435 kb on - strand at 400.435 kb on - strand at 400.437 kb on + strand at 400.447 kb on + strand at 400.447 kb on + strand at 400.467 kb on - strand, within psaK1 at 400.479 kb on - strand, within psaK1 at 400.480 kb on - strand, within psaK1 at 400.514 kb on + strand, within psaK1 at 400.573 kb on + strand, within psaK1 at 400.611 kb on + strand, within psaK1 at 400.621 kb on + strand, within psaK1 at 400.621 kb on + strand, within psaK1 at 400.621 kb on + strand, within psaK1 at 400.656 kb on - strand at 400.669 kb on - strand at 400.693 kb on - strand at 400.709 kb on + strand at 400.713 kb on - strand at 400.736 kb on - strand at 400.736 kb on - strand at 400.736 kb on - strand at 400.746 kb on - strand at 400.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 398,703 - +0.6 398,738 - +1.2 398,745 + +0.2 398,745 + +1.8 398,746 - -0.0 398,753 - +0.2 398,753 - -2.6 398,753 - -0.8 398,770 - -0.4 398,772 + +1.7 398,777 + -1.9 398,777 + +0.2 398,785 - -1.1 398,786 + -0.5 398,794 - -2.6 398,794 - +3.5 398,795 - -0.8 398,795 - +0.1 398,815 - -0.4 398,839 - -0.4 398,855 + +0.6 398,874 - -0.4 398,875 - +0.2 399,868 - -0.7 399,905 + -1.1 399,929 - +1.4 399,951 + -1.1 400,348 - -0.8 400,369 + +2.2 400,435 - -0.8 400,435 - -0.8 400,435 - -1.6 400,435 - +0.4 400,435 - -4.0 400,437 + -1.7 400,447 + +2.6 400,447 + -0.9 400,467 - psaK1 Synpcc7942_0407 0.16 -2.2 400,479 - psaK1 Synpcc7942_0407 0.21 -1.4 400,480 - psaK1 Synpcc7942_0407 0.21 -1.8 400,514 + psaK1 Synpcc7942_0407 0.35 -0.2 400,573 + psaK1 Synpcc7942_0407 0.59 -2.2 400,611 + psaK1 Synpcc7942_0407 0.75 -0.8 400,621 + psaK1 Synpcc7942_0407 0.79 +2.1 400,621 + psaK1 Synpcc7942_0407 0.79 -0.0 400,621 + psaK1 Synpcc7942_0407 0.79 +1.6 400,656 - +0.2 400,669 - -0.4 400,693 - +3.4 400,709 + +0.2 400,713 - +1.7 400,736 - +2.6 400,736 - -1.8 400,736 - -1.9 400,746 - +0.9 400,766 + +3.1
Or see this region's nucleotide sequence