Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ama and Synpcc7942_0257 overlap by 4 nucleotides Synpcc7942_0257 and Synpcc7942_0258 are separated by 48 nucleotides Synpcc7942_0258 and Synpcc7942_0259 are separated by 139 nucleotides Synpcc7942_0259 and clpC are separated by 154 nucleotides
Synpcc7942_0256: ama - Peptidase M20D, amidohydrolase, at 252,873 to 254,099
ama
Synpcc7942_0257: Synpcc7942_0257 - Protein of unknown function DUF92, transmembrane, at 254,096 to 254,845
_0257
Synpcc7942_0258: Synpcc7942_0258 - hypothetical protein, at 254,894 to 255,334
_0258
Synpcc7942_0259: Synpcc7942_0259 - hypothetical protein, at 255,474 to 255,806
_0259
Synpcc7942_0260: clpC - ATPase, at 255,961 to 258,435
clpC
Position (kb) 254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 253.925 kb on + strand, within ama at 253.931 kb on - strand, within ama at 253.933 kb on - strand, within ama at 253.939 kb on - strand, within ama at 253.939 kb on - strand, within ama at 253.950 kb on - strand, within ama at 254.052 kb on - strand at 254.829 kb on + strand at 254.839 kb on + strand at 254.839 kb on + strand at 254.846 kb on + strand at 254.847 kb on - strand at 254.849 kb on - strand at 254.909 kb on + strand at 254.917 kb on - strand at 254.917 kb on - strand at 254.977 kb on - strand, within Synpcc7942_0258 at 255.044 kb on + strand, within Synpcc7942_0258 at 255.044 kb on + strand, within Synpcc7942_0258 at 255.044 kb on + strand, within Synpcc7942_0258 at 255.052 kb on - strand, within Synpcc7942_0258 at 255.052 kb on - strand, within Synpcc7942_0258 at 255.052 kb on - strand, within Synpcc7942_0258 at 255.052 kb on - strand, within Synpcc7942_0258 at 255.054 kb on - strand, within Synpcc7942_0258 at 255.067 kb on - strand, within Synpcc7942_0258 at 255.076 kb on - strand, within Synpcc7942_0258 at 255.078 kb on + strand, within Synpcc7942_0258 at 255.101 kb on - strand, within Synpcc7942_0258 at 255.102 kb on - strand, within Synpcc7942_0258 at 255.103 kb on + strand, within Synpcc7942_0258 at 255.121 kb on - strand, within Synpcc7942_0258 at 255.194 kb on + strand, within Synpcc7942_0258 at 255.212 kb on - strand, within Synpcc7942_0258 at 255.293 kb on + strand at 255.335 kb on - strand at 255.398 kb on + strand at 255.445 kb on - strand at 255.477 kb on + strand at 255.485 kb on - strand at 255.596 kb on - strand, within Synpcc7942_0259 at 255.596 kb on - strand, within Synpcc7942_0259 at 255.600 kb on - strand, within Synpcc7942_0259 at 255.615 kb on + strand, within Synpcc7942_0259 at 255.639 kb on + strand at 255.693 kb on + strand, within Synpcc7942_0259 at 255.728 kb on + strand, within Synpcc7942_0259 at 255.762 kb on + strand, within Synpcc7942_0259 at 255.762 kb on - strand, within Synpcc7942_0259 at 255.856 kb on - strand at 255.856 kb on - strand at 255.915 kb on - strand at 255.927 kb on - strand at 255.933 kb on - strand at 255.943 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 253,925 + ama Synpcc7942_0256 0.86 -0.2 253,931 - ama Synpcc7942_0256 0.86 -0.5 253,933 - ama Synpcc7942_0256 0.86 +1.8 253,939 - ama Synpcc7942_0256 0.87 +0.1 253,939 - ama Synpcc7942_0256 0.87 -0.2 253,950 - ama Synpcc7942_0256 0.88 +2.6 254,052 - +2.3 254,829 + -1.7 254,839 + -0.2 254,839 + +1.8 254,846 + +1.1 254,847 - -0.5 254,849 - +1.4 254,909 + +2.2 254,917 - -1.5 254,917 - +4.5 254,977 - Synpcc7942_0258 0.19 +1.6 255,044 + Synpcc7942_0258 0.34 +4.0 255,044 + Synpcc7942_0258 0.34 -0.9 255,044 + Synpcc7942_0258 0.34 +2.7 255,052 - Synpcc7942_0258 0.36 +1.1 255,052 - Synpcc7942_0258 0.36 +4.4 255,052 - Synpcc7942_0258 0.36 -2.7 255,052 - Synpcc7942_0258 0.36 +5.5 255,054 - Synpcc7942_0258 0.36 +2.6 255,067 - Synpcc7942_0258 0.39 +2.9 255,076 - Synpcc7942_0258 0.41 +2.1 255,078 + Synpcc7942_0258 0.42 -1.7 255,101 - Synpcc7942_0258 0.47 +1.8 255,102 - Synpcc7942_0258 0.47 +4.5 255,103 + Synpcc7942_0258 0.47 -0.7 255,121 - Synpcc7942_0258 0.51 -0.4 255,194 + Synpcc7942_0258 0.68 +3.2 255,212 - Synpcc7942_0258 0.72 +0.1 255,293 + -1.9 255,335 - +1.7 255,398 + +3.1 255,445 - +0.1 255,477 + -1.2 255,485 - -3.3 255,596 - Synpcc7942_0259 0.37 -1.2 255,596 - Synpcc7942_0259 0.37 -0.5 255,600 - Synpcc7942_0259 0.38 +2.8 255,615 + Synpcc7942_0259 0.42 +1.7 255,639 + +0.1 255,693 + Synpcc7942_0259 0.66 +0.5 255,728 + Synpcc7942_0259 0.76 +0.4 255,762 + Synpcc7942_0259 0.86 +4.3 255,762 - Synpcc7942_0259 0.86 +1.4 255,856 - +0.9 255,856 - +1.9 255,915 - -0.2 255,927 - +0.1 255,933 - -0.3 255,943 + -0.5
Or see this region's nucleotide sequence