Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt polA and Synpcc7942_0195 are separated by 113 nucleotides Synpcc7942_0195 and Synpcc7942_0196 are separated by 35 nucleotides Synpcc7942_0196 and Synpcc7942_0197 overlap by 4 nucleotides
Synpcc7942_0194: polA - DNA polymerase I, at 192,655 to 195,516
polA
Synpcc7942_0195: Synpcc7942_0195 - hypothetical protein, at 195,630 to 196,058
_0195
Synpcc7942_0196: Synpcc7942_0196 - Beta-carotene 15,15'-dioxygenase, at 196,094 to 197,575
_0196
Synpcc7942_0197: Synpcc7942_0197 - folate/biopterin transporter, at 197,572 to 198,933
_0197
Position (kb) 196
197
198 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 195.498 kb on - strand at 195.498 kb on - strand at 195.505 kb on + strand at 195.534 kb on - strand at 195.585 kb on - strand at 195.665 kb on - strand at 195.665 kb on - strand at 195.666 kb on - strand at 195.691 kb on - strand, within Synpcc7942_0195 at 195.705 kb on + strand, within Synpcc7942_0195 at 195.765 kb on + strand, within Synpcc7942_0195 at 195.765 kb on + strand, within Synpcc7942_0195 at 195.775 kb on + strand, within Synpcc7942_0195 at 195.775 kb on + strand, within Synpcc7942_0195 at 195.780 kb on + strand, within Synpcc7942_0195 at 195.785 kb on + strand, within Synpcc7942_0195 at 195.790 kb on + strand, within Synpcc7942_0195 at 195.790 kb on + strand, within Synpcc7942_0195 at 195.790 kb on + strand, within Synpcc7942_0195 at 195.793 kb on - strand, within Synpcc7942_0195 at 195.795 kb on + strand, within Synpcc7942_0195 at 195.795 kb on + strand, within Synpcc7942_0195 at 195.795 kb on + strand, within Synpcc7942_0195 at 195.803 kb on - strand, within Synpcc7942_0195 at 195.820 kb on + strand, within Synpcc7942_0195 at 195.855 kb on + strand, within Synpcc7942_0195 at 195.863 kb on - strand, within Synpcc7942_0195 at 195.887 kb on + strand, within Synpcc7942_0195 at 195.895 kb on - strand, within Synpcc7942_0195 at 195.898 kb on - strand, within Synpcc7942_0195 at 195.905 kb on + strand, within Synpcc7942_0195 at 195.913 kb on - strand, within Synpcc7942_0195 at 195.913 kb on - strand, within Synpcc7942_0195 at 195.947 kb on + strand, within Synpcc7942_0195 at 195.948 kb on - strand, within Synpcc7942_0195 at 195.975 kb on + strand, within Synpcc7942_0195 at 195.993 kb on - strand, within Synpcc7942_0195 at 195.993 kb on - strand, within Synpcc7942_0195 at 195.999 kb on + strand, within Synpcc7942_0195 at 196.018 kb on - strand at 196.023 kb on - strand at 196.078 kb on + strand at 196.115 kb on - strand at 196.140 kb on + strand at 196.144 kb on + strand at 196.146 kb on + strand at 196.180 kb on + strand at 196.187 kb on + strand at 196.188 kb on - strand at 196.195 kb on - strand at 196.201 kb on + strand at 196.202 kb on + strand at 196.208 kb on - strand at 196.208 kb on - strand at 196.210 kb on + strand at 196.210 kb on + strand at 196.210 kb on - strand at 196.212 kb on + strand at 196.217 kb on + strand at 196.218 kb on - strand at 196.218 kb on - strand at 196.329 kb on + strand, within Synpcc7942_0196 at 196.329 kb on + strand, within Synpcc7942_0196 at 196.329 kb on + strand, within Synpcc7942_0196 at 196.329 kb on - strand, within Synpcc7942_0196 at 196.337 kb on - strand, within Synpcc7942_0196 at 196.362 kb on + strand, within Synpcc7942_0196 at 196.362 kb on + strand, within Synpcc7942_0196 at 196.367 kb on - strand, within Synpcc7942_0196 at 196.381 kb on - strand, within Synpcc7942_0196 at 196.384 kb on + strand, within Synpcc7942_0196 at 196.399 kb on + strand, within Synpcc7942_0196 at 196.402 kb on - strand, within Synpcc7942_0196 at 196.421 kb on + strand, within Synpcc7942_0196 at 196.443 kb on + strand, within Synpcc7942_0196 at 196.446 kb on + strand, within Synpcc7942_0196 at 196.446 kb on - strand, within Synpcc7942_0196 at 196.446 kb on - strand, within Synpcc7942_0196 at 196.454 kb on - strand, within Synpcc7942_0196 at 196.493 kb on + strand, within Synpcc7942_0196 at 196.501 kb on - strand, within Synpcc7942_0196 at 196.503 kb on + strand, within Synpcc7942_0196 at 196.513 kb on + strand, within Synpcc7942_0196 at 196.513 kb on + strand, within Synpcc7942_0196 at 196.516 kb on - strand, within Synpcc7942_0196 at 196.516 kb on - strand, within Synpcc7942_0196 at 196.521 kb on - strand, within Synpcc7942_0196 at 196.521 kb on - strand, within Synpcc7942_0196 at 196.533 kb on - strand, within Synpcc7942_0196 at 196.573 kb on + strand, within Synpcc7942_0196 at 196.581 kb on - strand, within Synpcc7942_0196 at 196.658 kb on + strand, within Synpcc7942_0196 at 196.670 kb on + strand, within Synpcc7942_0196 at 196.678 kb on - strand, within Synpcc7942_0196 at 196.678 kb on - strand, within Synpcc7942_0196 at 196.678 kb on - strand at 196.703 kb on + strand, within Synpcc7942_0196 at 196.708 kb on - strand, within Synpcc7942_0196 at 196.709 kb on - strand, within Synpcc7942_0196 at 196.739 kb on + strand, within Synpcc7942_0196 at 196.780 kb on - strand, within Synpcc7942_0196 at 196.800 kb on - strand, within Synpcc7942_0196 at 196.804 kb on - strand, within Synpcc7942_0196 at 196.810 kb on - strand, within Synpcc7942_0196 at 196.853 kb on - strand, within Synpcc7942_0196 at 196.857 kb on - strand at 196.869 kb on - strand, within Synpcc7942_0196 at 196.901 kb on + strand, within Synpcc7942_0196 at 196.945 kb on + strand, within Synpcc7942_0196 at 196.994 kb on + strand, within Synpcc7942_0196 at 197.004 kb on + strand, within Synpcc7942_0196 at 197.050 kb on + strand, within Synpcc7942_0196 at 197.078 kb on - strand, within Synpcc7942_0196 at 197.118 kb on - strand, within Synpcc7942_0196 at 197.123 kb on - strand, within Synpcc7942_0196 at 197.144 kb on - strand, within Synpcc7942_0196 at 197.168 kb on - strand, within Synpcc7942_0196 at 197.168 kb on - strand, within Synpcc7942_0196 at 197.174 kb on - strand, within Synpcc7942_0196 at 197.184 kb on + strand, within Synpcc7942_0196 at 197.261 kb on - strand, within Synpcc7942_0196 at 197.275 kb on + strand, within Synpcc7942_0196 at 197.283 kb on - strand, within Synpcc7942_0196 at 197.286 kb on + strand, within Synpcc7942_0196 at 197.286 kb on + strand, within Synpcc7942_0196 at 197.286 kb on + strand, within Synpcc7942_0196 at 197.295 kb on - strand, within Synpcc7942_0196 at 197.341 kb on - strand, within Synpcc7942_0196 at 197.389 kb on + strand, within Synpcc7942_0196 at 197.389 kb on + strand, within Synpcc7942_0196 at 197.397 kb on - strand, within Synpcc7942_0196 at 197.413 kb on + strand, within Synpcc7942_0196 at 197.421 kb on - strand, within Synpcc7942_0196 at 197.433 kb on + strand at 197.434 kb on - strand at 197.441 kb on + strand at 197.441 kb on - strand at 197.447 kb on - strand at 197.449 kb on - strand at 197.499 kb on - strand at 197.503 kb on + strand at 197.515 kb on - strand at 197.522 kb on - strand at 197.534 kb on + strand at 197.534 kb on + strand at 197.534 kb on + strand at 197.577 kb on + strand at 197.591 kb on - strand at 197.592 kb on + strand at 197.599 kb on - strand at 197.600 kb on - strand at 197.603 kb on + strand at 197.616 kb on + strand at 197.616 kb on + strand at 197.638 kb on - strand at 197.648 kb on + strand at 197.648 kb on - strand at 197.656 kb on - strand at 197.665 kb on + strand at 197.674 kb on - strand at 197.683 kb on + strand at 197.688 kb on + strand at 197.689 kb on - strand at 197.689 kb on - strand at 197.733 kb on + strand, within Synpcc7942_0197 at 197.745 kb on + strand, within Synpcc7942_0197 at 197.745 kb on + strand, within Synpcc7942_0197 at 197.745 kb on + strand, within Synpcc7942_0197 at 197.765 kb on + strand, within Synpcc7942_0197 at 197.770 kb on - strand, within Synpcc7942_0197 at 197.771 kb on - strand, within Synpcc7942_0197 at 197.785 kb on - strand, within Synpcc7942_0197 at 197.794 kb on + strand, within Synpcc7942_0197 at 197.804 kb on + strand, within Synpcc7942_0197 at 197.812 kb on - strand, within Synpcc7942_0197 at 197.823 kb on - strand, within Synpcc7942_0197 at 197.829 kb on + strand, within Synpcc7942_0197 at 197.836 kb on - strand, within Synpcc7942_0197 at 197.837 kb on - strand at 197.863 kb on + strand, within Synpcc7942_0197 at 197.866 kb on - strand, within Synpcc7942_0197 at 197.874 kb on + strand, within Synpcc7942_0197 at 197.882 kb on - strand at 197.882 kb on - strand, within Synpcc7942_0197 at 197.922 kb on + strand, within Synpcc7942_0197 at 197.922 kb on + strand, within Synpcc7942_0197 at 197.924 kb on - strand, within Synpcc7942_0197 at 197.926 kb on + strand at 197.943 kb on + strand, within Synpcc7942_0197 at 197.956 kb on + strand, within Synpcc7942_0197 at 197.962 kb on - strand, within Synpcc7942_0197 at 197.984 kb on + strand, within Synpcc7942_0197 at 197.984 kb on + strand, within Synpcc7942_0197 at 197.991 kb on - strand, within Synpcc7942_0197 at 198.004 kb on + strand, within Synpcc7942_0197 at 198.102 kb on + strand, within Synpcc7942_0197 at 198.110 kb on - strand, within Synpcc7942_0197 at 198.112 kb on + strand, within Synpcc7942_0197 at 198.118 kb on - strand, within Synpcc7942_0197 at 198.133 kb on - strand, within Synpcc7942_0197 at 198.163 kb on + strand, within Synpcc7942_0197 at 198.255 kb on - strand, within Synpcc7942_0197 at 198.258 kb on + strand, within Synpcc7942_0197 at 198.281 kb on - strand, within Synpcc7942_0197 at 198.368 kb on - strand, within Synpcc7942_0197 at 198.403 kb on + strand, within Synpcc7942_0197 at 198.415 kb on + strand, within Synpcc7942_0197 at 198.424 kb on + strand, within Synpcc7942_0197 at 198.432 kb on - strand, within Synpcc7942_0197 at 198.440 kb on + strand, within Synpcc7942_0197 at 198.459 kb on - strand, within Synpcc7942_0197 at 198.533 kb on - strand, within Synpcc7942_0197 at 198.536 kb on + strand, within Synpcc7942_0197
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 195,498 - -0.0 195,498 - -1.6 195,505 + -1.0 195,534 - -4.9 195,585 - +2.0 195,665 - -0.6 195,665 - +2.0 195,666 - -0.0 195,691 - Synpcc7942_0195 0.14 -1.3 195,705 + Synpcc7942_0195 0.17 +0.8 195,765 + Synpcc7942_0195 0.31 +4.0 195,765 + Synpcc7942_0195 0.31 -0.0 195,775 + Synpcc7942_0195 0.34 +0.6 195,775 + Synpcc7942_0195 0.34 -0.6 195,780 + Synpcc7942_0195 0.35 -0.4 195,785 + Synpcc7942_0195 0.36 -1.6 195,790 + Synpcc7942_0195 0.37 +2.2 195,790 + Synpcc7942_0195 0.37 -2.3 195,790 + Synpcc7942_0195 0.37 -0.0 195,793 - Synpcc7942_0195 0.38 -0.0 195,795 + Synpcc7942_0195 0.38 -1.9 195,795 + Synpcc7942_0195 0.38 -1.6 195,795 + Synpcc7942_0195 0.38 -2.0 195,803 - Synpcc7942_0195 0.40 +1.9 195,820 + Synpcc7942_0195 0.44 -2.0 195,855 + Synpcc7942_0195 0.52 -1.0 195,863 - Synpcc7942_0195 0.54 +0.8 195,887 + Synpcc7942_0195 0.60 -1.6 195,895 - Synpcc7942_0195 0.62 -1.0 195,898 - Synpcc7942_0195 0.62 -0.6 195,905 + Synpcc7942_0195 0.64 -2.2 195,913 - Synpcc7942_0195 0.66 +2.0 195,913 - Synpcc7942_0195 0.66 -3.0 195,947 + Synpcc7942_0195 0.74 +1.8 195,948 - Synpcc7942_0195 0.74 +0.5 195,975 + Synpcc7942_0195 0.80 -2.3 195,993 - Synpcc7942_0195 0.85 +2.2 195,993 - Synpcc7942_0195 0.85 -2.0 195,999 + Synpcc7942_0195 0.86 -0.0 196,018 - -2.7 196,023 - +2.0 196,078 + +1.3 196,115 - -0.7 196,140 + +3.3 196,144 + +2.8 196,146 + +2.7 196,180 + +7.6 196,187 + +2.0 196,188 - -2.2 196,195 - +0.9 196,201 + +4.4 196,202 + +2.3 196,208 - +5.3 196,208 - -0.6 196,210 + +2.6 196,210 + +1.4 196,210 - +4.6 196,212 + +4.8 196,217 + +1.6 196,218 - -1.3 196,218 - +1.7 196,329 + Synpcc7942_0196 0.16 +2.0 196,329 + Synpcc7942_0196 0.16 +5.9 196,329 + Synpcc7942_0196 0.16 +5.4 196,329 - Synpcc7942_0196 0.16 +2.5 196,337 - Synpcc7942_0196 0.16 +2.8 196,362 + Synpcc7942_0196 0.18 +0.9 196,362 + Synpcc7942_0196 0.18 +4.8 196,367 - Synpcc7942_0196 0.18 +0.7 196,381 - Synpcc7942_0196 0.19 +4.2 196,384 + Synpcc7942_0196 0.20 -0.0 196,399 + Synpcc7942_0196 0.21 +2.5 196,402 - Synpcc7942_0196 0.21 +3.7 196,421 + Synpcc7942_0196 0.22 +2.0 196,443 + Synpcc7942_0196 0.24 +3.9 196,446 + Synpcc7942_0196 0.24 +0.2 196,446 - Synpcc7942_0196 0.24 +5.7 196,446 - Synpcc7942_0196 0.24 +3.1 196,454 - Synpcc7942_0196 0.24 +3.3 196,493 + Synpcc7942_0196 0.27 +6.0 196,501 - Synpcc7942_0196 0.27 +2.6 196,503 + Synpcc7942_0196 0.28 +2.5 196,513 + Synpcc7942_0196 0.28 +6.4 196,513 + Synpcc7942_0196 0.28 +1.5 196,516 - Synpcc7942_0196 0.28 +4.5 196,516 - Synpcc7942_0196 0.28 +6.4 196,521 - Synpcc7942_0196 0.29 -1.3 196,521 - Synpcc7942_0196 0.29 +2.1 196,533 - Synpcc7942_0196 0.30 +4.4 196,573 + Synpcc7942_0196 0.32 +4.6 196,581 - Synpcc7942_0196 0.33 +5.6 196,658 + Synpcc7942_0196 0.38 +3.7 196,670 + Synpcc7942_0196 0.39 -1.0 196,678 - Synpcc7942_0196 0.39 +1.9 196,678 - Synpcc7942_0196 0.39 +3.1 196,678 - +1.0 196,703 + Synpcc7942_0196 0.41 -1.8 196,708 - Synpcc7942_0196 0.41 -2.0 196,709 - Synpcc7942_0196 0.41 +2.9 196,739 + Synpcc7942_0196 0.44 +2.8 196,780 - Synpcc7942_0196 0.46 +1.0 196,800 - Synpcc7942_0196 0.48 -0.6 196,804 - Synpcc7942_0196 0.48 +5.0 196,810 - Synpcc7942_0196 0.48 +0.4 196,853 - Synpcc7942_0196 0.51 +2.0 196,857 - +2.9 196,869 - Synpcc7942_0196 0.52 +2.2 196,901 + Synpcc7942_0196 0.54 -0.7 196,945 + Synpcc7942_0196 0.57 +4.9 196,994 + Synpcc7942_0196 0.61 +1.4 197,004 + Synpcc7942_0196 0.61 -1.7 197,050 + Synpcc7942_0196 0.65 +1.7 197,078 - Synpcc7942_0196 0.66 +4.6 197,118 - Synpcc7942_0196 0.69 +3.6 197,123 - Synpcc7942_0196 0.69 +3.9 197,144 - Synpcc7942_0196 0.71 +4.3 197,168 - Synpcc7942_0196 0.72 +2.4 197,168 - Synpcc7942_0196 0.72 +5.9 197,174 - Synpcc7942_0196 0.73 +7.0 197,184 + Synpcc7942_0196 0.74 -1.8 197,261 - Synpcc7942_0196 0.79 +2.2 197,275 + Synpcc7942_0196 0.80 +3.5 197,283 - Synpcc7942_0196 0.80 +2.6 197,286 + Synpcc7942_0196 0.80 +3.0 197,286 + Synpcc7942_0196 0.80 +4.9 197,286 + Synpcc7942_0196 0.80 +4.5 197,295 - Synpcc7942_0196 0.81 +2.6 197,341 - Synpcc7942_0196 0.84 +4.2 197,389 + Synpcc7942_0196 0.87 +3.4 197,389 + Synpcc7942_0196 0.87 +4.7 197,397 - Synpcc7942_0196 0.88 +4.3 197,413 + Synpcc7942_0196 0.89 +1.7 197,421 - Synpcc7942_0196 0.90 +4.2 197,433 + +0.1 197,434 - +1.8 197,441 + +2.2 197,441 - +5.7 197,447 - +5.9 197,449 - +5.2 197,499 - +4.5 197,503 + +5.1 197,515 - +5.7 197,522 - +2.7 197,534 + +2.7 197,534 + +4.4 197,534 + -2.6 197,577 + +0.1 197,591 - +1.8 197,592 + +1.1 197,599 - -0.0 197,600 - +0.2 197,603 + -1.8 197,616 + +2.2 197,616 + -0.6 197,638 - -0.6 197,648 + -2.3 197,648 - +1.0 197,656 - +1.1 197,665 + +0.8 197,674 - +4.2 197,683 + -0.0 197,688 + -2.5 197,689 - +3.9 197,689 - -0.6 197,733 + Synpcc7942_0197 0.12 -0.4 197,745 + Synpcc7942_0197 0.13 +1.8 197,745 + Synpcc7942_0197 0.13 -1.8 197,745 + Synpcc7942_0197 0.13 -1.3 197,765 + Synpcc7942_0197 0.14 -0.6 197,770 - Synpcc7942_0197 0.15 +1.3 197,771 - Synpcc7942_0197 0.15 -1.2 197,785 - Synpcc7942_0197 0.16 +1.0 197,794 + Synpcc7942_0197 0.16 -0.4 197,804 + Synpcc7942_0197 0.17 +1.3 197,812 - Synpcc7942_0197 0.18 +1.4 197,823 - Synpcc7942_0197 0.18 -0.8 197,829 + Synpcc7942_0197 0.19 -1.0 197,836 - Synpcc7942_0197 0.19 -1.8 197,837 - +1.0 197,863 + Synpcc7942_0197 0.21 +1.0 197,866 - Synpcc7942_0197 0.22 -0.6 197,874 + Synpcc7942_0197 0.22 +2.1 197,882 - +5.2 197,882 - Synpcc7942_0197 0.23 +1.0 197,922 + Synpcc7942_0197 0.26 +2.9 197,922 + Synpcc7942_0197 0.26 -1.0 197,924 - Synpcc7942_0197 0.26 -0.6 197,926 + -0.6 197,943 + Synpcc7942_0197 0.27 +1.1 197,956 + Synpcc7942_0197 0.28 -2.5 197,962 - Synpcc7942_0197 0.29 -1.6 197,984 + Synpcc7942_0197 0.30 -2.2 197,984 + Synpcc7942_0197 0.30 -0.0 197,991 - Synpcc7942_0197 0.31 +1.8 198,004 + Synpcc7942_0197 0.32 -1.8 198,102 + Synpcc7942_0197 0.39 +1.4 198,110 - Synpcc7942_0197 0.40 -4.1 198,112 + Synpcc7942_0197 0.40 -3.3 198,118 - Synpcc7942_0197 0.40 -0.0 198,133 - Synpcc7942_0197 0.41 +1.4 198,163 + Synpcc7942_0197 0.43 +0.4 198,255 - Synpcc7942_0197 0.50 -1.3 198,258 + Synpcc7942_0197 0.50 -1.6 198,281 - Synpcc7942_0197 0.52 +5.3 198,368 - Synpcc7942_0197 0.58 -2.0 198,403 + Synpcc7942_0197 0.61 +4.0 198,415 + Synpcc7942_0197 0.62 -0.0 198,424 + Synpcc7942_0197 0.63 +1.0 198,432 - Synpcc7942_0197 0.63 +2.3 198,440 + Synpcc7942_0197 0.64 +0.3 198,459 - Synpcc7942_0197 0.65 +1.2 198,533 - Synpcc7942_0197 0.71 +0.4 198,536 + Synpcc7942_0197 0.71 +0.5
Or see this region's nucleotide sequence