Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mraY and Synpcc7942_0153 are separated by 14 nucleotides Synpcc7942_0153 and Synpcc7942_0154 are separated by 32 nucleotides Synpcc7942_0154 and Synpcc7942_0155 overlap by 4 nucleotides Synpcc7942_0155 and Synpcc7942_0156 are separated by 25 nucleotides
Synpcc7942_0152: mraY - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 154,914 to 156,011
mraY
Synpcc7942_0153: Synpcc7942_0153 - hypothetical protein, at 156,026 to 156,307
_0153
Synpcc7942_0154: Synpcc7942_0154 - hypothetical protein, at 156,340 to 156,957
_0154
Synpcc7942_0155: Synpcc7942_0155 - hypothetical protein, at 156,954 to 157,184
_0155
Synpcc7942_0156: Synpcc7942_0156 - phosphoglucomutase, at 157,210 to 158,841
_0156
Position (kb) 156
157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 156.009 kb on - strand at 156.009 kb on - strand at 156.014 kb on + strand at 156.332 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.410 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.434 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.470 kb on + strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.549 kb on + strand, within Synpcc7942_0154 at 156.569 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.572 kb on + strand, within Synpcc7942_0154 at 156.576 kb on - strand, within Synpcc7942_0154 at 156.590 kb on - strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.607 kb on - strand, within Synpcc7942_0154 at 156.629 kb on + strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.657 kb on - strand, within Synpcc7942_0154 at 156.659 kb on - strand, within Synpcc7942_0154 at 156.661 kb on + strand, within Synpcc7942_0154 at 156.692 kb on - strand, within Synpcc7942_0154 at 156.719 kb on + strand, within Synpcc7942_0154 at 156.758 kb on - strand, within Synpcc7942_0154 at 156.782 kb on - strand, within Synpcc7942_0154 at 156.851 kb on - strand, within Synpcc7942_0154 at 156.857 kb on + strand, within Synpcc7942_0154 at 156.867 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.904 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.963 kb on + strand at 156.976 kb on - strand at 156.989 kb on - strand, within Synpcc7942_0155 at 156.992 kb on + strand, within Synpcc7942_0155 at 157.004 kb on + strand, within Synpcc7942_0155 at 157.020 kb on - strand, within Synpcc7942_0155 at 157.087 kb on - strand, within Synpcc7942_0155 at 157.109 kb on + strand, within Synpcc7942_0155 at 157.109 kb on + strand, within Synpcc7942_0155 at 157.117 kb on - strand, within Synpcc7942_0155 at 157.159 kb on - strand, within Synpcc7942_0155 at 157.178 kb on + strand at 157.178 kb on + strand at 157.184 kb on + strand at 157.207 kb on + strand at 157.214 kb on - strand at 157.248 kb on - strand at 157.255 kb on - strand at 157.317 kb on + strand at 157.512 kb on + strand, within Synpcc7942_0156 at 157.527 kb on + strand, within Synpcc7942_0156 at 157.625 kb on - strand, within Synpcc7942_0156 at 157.630 kb on + strand, within Synpcc7942_0156 at 157.700 kb on + strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.829 kb on + strand, within Synpcc7942_0156 at 157.870 kb on + strand, within Synpcc7942_0156 at 157.882 kb on - strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.907 kb on - strand, within Synpcc7942_0156 at 158.152 kb on + strand, within Synpcc7942_0156
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 156,009 - +0.2 156,009 - -0.0 156,014 + -2.5 156,332 - +0.4 156,366 - +1.5 156,366 - +3.6 156,366 - +0.4 156,366 - +1.8 156,410 + Synpcc7942_0154 0.11 +0.6 156,431 + Synpcc7942_0154 0.15 +1.6 156,431 + Synpcc7942_0154 0.15 -1.8 156,434 - Synpcc7942_0154 0.15 -1.6 156,439 - Synpcc7942_0154 0.16 -1.8 156,439 - Synpcc7942_0154 0.16 -0.1 156,439 - Synpcc7942_0154 0.16 -2.2 156,449 + Synpcc7942_0154 0.18 -0.6 156,449 + Synpcc7942_0154 0.18 +2.0 156,470 + Synpcc7942_0154 0.21 -1.3 156,512 - Synpcc7942_0154 0.28 +3.3 156,512 - Synpcc7942_0154 0.28 -1.0 156,525 + Synpcc7942_0154 0.30 -0.0 156,525 + Synpcc7942_0154 0.30 +1.0 156,539 + Synpcc7942_0154 0.32 +3.2 156,539 + Synpcc7942_0154 0.32 -1.6 156,539 + Synpcc7942_0154 0.32 -0.6 156,549 + Synpcc7942_0154 0.34 +1.1 156,569 - Synpcc7942_0154 0.37 -1.3 156,571 - Synpcc7942_0154 0.37 -0.6 156,571 - Synpcc7942_0154 0.37 +3.9 156,572 + Synpcc7942_0154 0.38 +2.1 156,576 - Synpcc7942_0154 0.38 -2.0 156,590 - Synpcc7942_0154 0.40 -2.8 156,599 + Synpcc7942_0154 0.42 -1.0 156,599 + Synpcc7942_0154 0.42 +0.4 156,599 + Synpcc7942_0154 0.42 -0.8 156,607 - Synpcc7942_0154 0.43 +0.5 156,629 + Synpcc7942_0154 0.47 +0.4 156,637 - Synpcc7942_0154 0.48 -1.3 156,637 - Synpcc7942_0154 0.48 -0.0 156,657 - Synpcc7942_0154 0.51 -0.0 156,659 - Synpcc7942_0154 0.52 -1.0 156,661 + Synpcc7942_0154 0.52 +1.6 156,692 - Synpcc7942_0154 0.57 -1.6 156,719 + Synpcc7942_0154 0.61 -0.0 156,758 - Synpcc7942_0154 0.68 -2.0 156,782 - Synpcc7942_0154 0.72 -3.8 156,851 - Synpcc7942_0154 0.83 +0.5 156,857 + Synpcc7942_0154 0.84 -1.0 156,867 + Synpcc7942_0154 0.85 +0.8 156,878 + Synpcc7942_0154 0.87 -0.0 156,878 + Synpcc7942_0154 0.87 +1.6 156,904 + -0.0 156,933 + +1.4 156,933 + -0.0 156,933 + +0.7 156,941 - -1.8 156,941 - +1.3 156,941 - -0.6 156,963 + -1.3 156,976 - -0.1 156,989 - Synpcc7942_0155 0.15 +4.1 156,992 + Synpcc7942_0155 0.16 +2.6 157,004 + Synpcc7942_0155 0.22 +2.3 157,020 - Synpcc7942_0155 0.29 -1.6 157,087 - Synpcc7942_0155 0.58 +1.0 157,109 + Synpcc7942_0155 0.67 +2.0 157,109 + Synpcc7942_0155 0.67 +3.2 157,117 - Synpcc7942_0155 0.71 -0.0 157,159 - Synpcc7942_0155 0.89 -2.7 157,178 + +1.4 157,178 + -0.4 157,184 + +1.0 157,207 + +0.7 157,214 - +2.6 157,248 - -2.7 157,255 - -1.3 157,317 + -0.6 157,512 + Synpcc7942_0156 0.19 +1.0 157,527 + Synpcc7942_0156 0.19 -1.3 157,625 - Synpcc7942_0156 0.25 -0.0 157,630 + Synpcc7942_0156 0.26 -1.3 157,700 + Synpcc7942_0156 0.30 -3.2 157,737 - Synpcc7942_0156 0.32 -0.0 157,737 - Synpcc7942_0156 0.32 -0.6 157,737 - Synpcc7942_0156 0.32 -2.6 157,829 + Synpcc7942_0156 0.38 -3.9 157,870 + Synpcc7942_0156 0.40 -2.6 157,882 - Synpcc7942_0156 0.41 -0.0 157,889 + Synpcc7942_0156 0.42 -1.3 157,889 + Synpcc7942_0156 0.42 -2.4 157,889 + Synpcc7942_0156 0.42 -2.6 157,897 - Synpcc7942_0156 0.42 +1.0 157,897 - Synpcc7942_0156 0.42 -1.8 157,897 - Synpcc7942_0156 0.42 -3.1 157,907 - Synpcc7942_0156 0.43 -0.6 158,152 + Synpcc7942_0156 0.58 -1.0
Or see this region's nucleotide sequence