Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0077

Experiment: A22 0.000341796875 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpepP and Synpcc7942_0076 are separated by 2 nucleotidesSynpcc7942_0076 and Synpcc7942_0077 are separated by 75 nucleotidesSynpcc7942_0077 and Synpcc7942_0078 overlap by 4 nucleotidesSynpcc7942_0078 and ycf41 are separated by 74 nucleotides Synpcc7942_0075: pepP - aminopeptidase P. Metallo peptidase. MEROPS family M24B, at 73,775 to 75,088 pepP Synpcc7942_0076: Synpcc7942_0076 - extracellular solute-binding protein, family 3, at 75,091 to 75,852 _0076 Synpcc7942_0077: Synpcc7942_0077 - transcriptional regulator, XRE family, at 75,928 to 76,617 _0077 Synpcc7942_0078: Synpcc7942_0078 - hypothetical protein, at 76,614 to 77,063 _0078 Synpcc7942_0079: ycf41 - conserved hypothetical protein YCF41, at 77,138 to 77,584 ycf41 Position (kb) 75 76 77Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 74.934 kb on - strand, within pepPat 74.958 kb on - strandat 75.082 kb on - strandat 75.131 kb on + strandat 75.131 kb on + strandat 75.141 kb on + strandat 75.149 kb on - strandat 75.236 kb on + strand, within Synpcc7942_0076at 75.236 kb on + strand, within Synpcc7942_0076at 75.244 kb on - strand, within Synpcc7942_0076at 75.244 kb on - strand, within Synpcc7942_0076at 75.244 kb on - strand, within Synpcc7942_0076at 75.320 kb on + strand, within Synpcc7942_0076at 75.328 kb on - strand, within Synpcc7942_0076at 75.357 kb on + strand, within Synpcc7942_0076at 75.357 kb on + strand, within Synpcc7942_0076at 75.397 kb on - strand, within Synpcc7942_0076at 75.397 kb on - strand, within Synpcc7942_0076at 75.397 kb on - strand, within Synpcc7942_0076at 75.436 kb on + strand, within Synpcc7942_0076at 75.436 kb on + strand, within Synpcc7942_0076at 75.444 kb on - strand, within Synpcc7942_0076at 75.446 kb on + strandat 75.446 kb on + strand, within Synpcc7942_0076at 75.454 kb on - strand, within Synpcc7942_0076at 75.454 kb on - strand, within Synpcc7942_0076at 75.479 kb on - strand, within Synpcc7942_0076at 75.526 kb on + strand, within Synpcc7942_0076at 75.526 kb on + strand, within Synpcc7942_0076at 75.526 kb on + strand, within Synpcc7942_0076at 75.534 kb on - strandat 75.534 kb on - strand, within Synpcc7942_0076at 75.557 kb on - strand, within Synpcc7942_0076at 75.693 kb on - strand, within Synpcc7942_0076at 75.764 kb on - strand, within Synpcc7942_0076at 75.791 kb on + strandat 75.799 kb on - strandat 75.799 kb on - strandat 75.996 kb on + strandat 75.999 kb on - strand, within Synpcc7942_0077at 76.037 kb on - strand, within Synpcc7942_0077at 76.037 kb on - strand, within Synpcc7942_0077at 76.085 kb on + strand, within Synpcc7942_0077at 76.093 kb on - strand, within Synpcc7942_0077at 76.215 kb on - strand, within Synpcc7942_0077at 76.243 kb on - strand, within Synpcc7942_0077at 76.243 kb on - strand, within Synpcc7942_0077at 76.243 kb on - strand, within Synpcc7942_0077at 76.248 kb on - strand, within Synpcc7942_0077at 76.252 kb on - strand, within Synpcc7942_0077at 76.306 kb on + strand, within Synpcc7942_0077at 76.315 kb on - strand, within Synpcc7942_0077at 76.319 kb on - strand, within Synpcc7942_0077at 76.333 kb on - strand, within Synpcc7942_0077at 76.334 kb on + strand, within Synpcc7942_0077at 76.334 kb on + strand, within Synpcc7942_0077at 76.342 kb on - strand, within Synpcc7942_0077at 76.404 kb on + strand, within Synpcc7942_0077at 76.419 kb on + strand, within Synpcc7942_0077at 76.420 kb on + strand, within Synpcc7942_0077at 76.422 kb on - strand, within Synpcc7942_0077at 76.497 kb on - strand, within Synpcc7942_0077at 76.497 kb on - strand, within Synpcc7942_0077at 76.532 kb on - strand, within Synpcc7942_0077at 76.532 kb on - strand, within Synpcc7942_0077at 76.566 kb on + strandat 76.574 kb on - strandat 76.619 kb on - strandat 76.626 kb on + strandat 76.640 kb on - strandat 76.674 kb on + strand, within Synpcc7942_0078at 76.677 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strandat 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.756 kb on - strand, within Synpcc7942_0078at 76.770 kb on + strand, within Synpcc7942_0078at 76.775 kb on + strand, within Synpcc7942_0078at 76.775 kb on + strand, within Synpcc7942_0078at 76.775 kb on + strand, within Synpcc7942_0078at 76.783 kb on - strand, within Synpcc7942_0078at 76.796 kb on + strand, within Synpcc7942_0078at 76.796 kb on + strand, within Synpcc7942_0078at 76.797 kb on + strand, within Synpcc7942_0078at 76.886 kb on + strandat 76.889 kb on - strand, within Synpcc7942_0078at 76.932 kb on - strand, within Synpcc7942_0078at 76.956 kb on - strand, within Synpcc7942_0078at 76.958 kb on - strand, within Synpcc7942_0078at 77.016 kb on + strand, within Synpcc7942_0078at 77.024 kb on - strandat 77.028 kb on + strandat 77.047 kb on + strandat 77.121 kb on + strandat 77.128 kb on - strandat 77.128 kb on - strandat 77.134 kb on - strandat 77.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml
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74,934 - pepP Synpcc7942_0075 0.88 -0.6
74,958 - -2.1
75,082 - +1.0
75,131 + -0.0
75,131 + -2.8
75,141 + -1.0
75,149 - +0.7
75,236 + Synpcc7942_0076 0.19 -2.7
75,236 + Synpcc7942_0076 0.19 +2.0
75,244 - Synpcc7942_0076 0.20 +0.6
75,244 - Synpcc7942_0076 0.20 +1.0
75,244 - Synpcc7942_0076 0.20 +2.0
75,320 + Synpcc7942_0076 0.30 +0.4
75,328 - Synpcc7942_0076 0.31 +2.8
75,357 + Synpcc7942_0076 0.35 +0.4
75,357 + Synpcc7942_0076 0.35 +3.6
75,397 - Synpcc7942_0076 0.40 -0.0
75,397 - Synpcc7942_0076 0.40 -1.6
75,397 - Synpcc7942_0076 0.40 +1.4
75,436 + Synpcc7942_0076 0.45 +2.2
75,436 + Synpcc7942_0076 0.45 +2.8
75,444 - Synpcc7942_0076 0.46 -0.0
75,446 + +1.0
75,446 + Synpcc7942_0076 0.47 -0.0
75,454 - Synpcc7942_0076 0.48 +1.5
75,454 - Synpcc7942_0076 0.48 +3.9
75,479 - Synpcc7942_0076 0.51 -2.5
75,526 + Synpcc7942_0076 0.57 +4.5
75,526 + Synpcc7942_0076 0.57 -0.0
75,526 + Synpcc7942_0076 0.57 +3.0
75,534 - +1.0
75,534 - Synpcc7942_0076 0.58 -0.6
75,557 - Synpcc7942_0076 0.61 +4.6
75,693 - Synpcc7942_0076 0.79 -1.6
75,764 - Synpcc7942_0076 0.88 -2.6
75,791 + -2.0
75,799 - +1.6
75,799 - -0.6
75,996 + +3.8
75,999 - Synpcc7942_0077 0.10 +3.0
76,037 - Synpcc7942_0077 0.16 +2.7
76,037 - Synpcc7942_0077 0.16 -1.3
76,085 + Synpcc7942_0077 0.23 +3.9
76,093 - Synpcc7942_0077 0.24 +1.0
76,215 - Synpcc7942_0077 0.42 -0.0
76,243 - Synpcc7942_0077 0.46 -1.0
76,243 - Synpcc7942_0077 0.46 -2.0
76,243 - Synpcc7942_0077 0.46 +2.4
76,248 - Synpcc7942_0077 0.46 +4.4
76,252 - Synpcc7942_0077 0.47 +1.0
76,306 + Synpcc7942_0077 0.55 -1.3
76,315 - Synpcc7942_0077 0.56 -5.0
76,319 - Synpcc7942_0077 0.57 -0.2
76,333 - Synpcc7942_0077 0.59 +1.7
76,334 + Synpcc7942_0077 0.59 +1.2
76,334 + Synpcc7942_0077 0.59 -0.6
76,342 - Synpcc7942_0077 0.60 -0.6
76,404 + Synpcc7942_0077 0.69 +1.0
76,419 + Synpcc7942_0077 0.71 +2.6
76,420 + Synpcc7942_0077 0.71 +0.4
76,422 - Synpcc7942_0077 0.72 -3.5
76,497 - Synpcc7942_0077 0.82 -1.6
76,497 - Synpcc7942_0077 0.82 +1.1
76,532 - Synpcc7942_0077 0.88 +0.4
76,532 - Synpcc7942_0077 0.88 +3.6
76,566 + -0.6
76,574 - -0.6
76,619 - +1.9
76,626 + +1.0
76,640 - -0.0
76,674 + Synpcc7942_0078 0.13 -1.8
76,677 + Synpcc7942_0078 0.14 -2.3
76,743 + Synpcc7942_0078 0.29 +0.4
76,743 + Synpcc7942_0078 0.29 +1.0
76,743 + Synpcc7942_0078 0.29 +0.2
76,743 + Synpcc7942_0078 0.29 -1.8
76,743 + Synpcc7942_0078 0.29 -2.3
76,743 + Synpcc7942_0078 0.29 +0.1
76,743 + +1.0
76,743 + Synpcc7942_0078 0.29 +0.1
76,743 + Synpcc7942_0078 0.29 +1.2
76,751 - Synpcc7942_0078 0.30 +4.1
76,751 - Synpcc7942_0078 0.30 -0.3
76,751 - Synpcc7942_0078 0.30 -1.0
76,751 - Synpcc7942_0078 0.30 +1.6
76,751 - Synpcc7942_0078 0.30 -1.6
76,751 - Synpcc7942_0078 0.30 -0.0
76,751 - Synpcc7942_0078 0.30 +2.7
76,751 - Synpcc7942_0078 0.30 +1.7
76,756 - Synpcc7942_0078 0.32 +0.8
76,770 + Synpcc7942_0078 0.35 -2.0
76,775 + Synpcc7942_0078 0.36 -2.2
76,775 + Synpcc7942_0078 0.36 -1.6
76,775 + Synpcc7942_0078 0.36 +1.3
76,783 - Synpcc7942_0078 0.38 -1.3
76,796 + Synpcc7942_0078 0.40 +1.9
76,796 + Synpcc7942_0078 0.40 -2.0
76,797 + Synpcc7942_0078 0.41 +3.0
76,886 + +2.0
76,889 - Synpcc7942_0078 0.61 -1.0
76,932 - Synpcc7942_0078 0.71 +1.3
76,956 - Synpcc7942_0078 0.76 +0.8
76,958 - Synpcc7942_0078 0.76 -1.7
77,016 + Synpcc7942_0078 0.89 -2.2
77,024 - +2.9
77,028 + -1.1
77,047 + -1.0
77,121 + -1.6
77,128 - -0.2
77,128 - +1.0
77,134 - +0.2
77,166 - -0.6

Or see this region's nucleotide sequence