Experiment: A22 0.000341796875 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0044 and Synpcc7942_0045 are separated by 94 nucleotides Synpcc7942_0045 and Synpcc7942_0046 are separated by 236 nucleotides
Synpcc7942_0044: Synpcc7942_0044 - hypothetical protein, at 41,495 to 43,477
_0044
Synpcc7942_0045: Synpcc7942_0045 - TPR repeat, at 43,572 to 44,927
_0045
Synpcc7942_0046: Synpcc7942_0046 - Methylase involved in ubiquinone/menaquinone biosynthesis-like, at 45,164 to 46,507
_0046
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 42.572 kb on - strand, within Synpcc7942_0044 at 42.579 kb on - strand at 42.581 kb on + strand, within Synpcc7942_0044 at 42.611 kb on - strand, within Synpcc7942_0044 at 42.668 kb on + strand, within Synpcc7942_0044 at 42.668 kb on + strand, within Synpcc7942_0044 at 42.668 kb on + strand, within Synpcc7942_0044 at 42.670 kb on - strand, within Synpcc7942_0044 at 42.671 kb on - strand, within Synpcc7942_0044 at 42.673 kb on + strand, within Synpcc7942_0044 at 42.799 kb on + strand, within Synpcc7942_0044 at 42.814 kb on + strand, within Synpcc7942_0044 at 42.848 kb on + strand, within Synpcc7942_0044 at 42.848 kb on + strand, within Synpcc7942_0044 at 42.868 kb on - strand, within Synpcc7942_0044 at 42.877 kb on + strand, within Synpcc7942_0044 at 42.888 kb on + strand, within Synpcc7942_0044 at 42.900 kb on - strand, within Synpcc7942_0044 at 42.901 kb on + strand, within Synpcc7942_0044 at 42.909 kb on + strand, within Synpcc7942_0044 at 42.932 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.938 kb on + strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.946 kb on - strand, within Synpcc7942_0044 at 42.954 kb on - strand, within Synpcc7942_0044 at 42.978 kb on - strand, within Synpcc7942_0044 at 43.047 kb on + strand, within Synpcc7942_0044 at 43.053 kb on + strand, within Synpcc7942_0044 at 43.053 kb on + strand, within Synpcc7942_0044 at 43.086 kb on + strand, within Synpcc7942_0044 at 43.094 kb on - strand, within Synpcc7942_0044 at 43.094 kb on - strand, within Synpcc7942_0044 at 43.104 kb on + strand, within Synpcc7942_0044 at 43.119 kb on + strand, within Synpcc7942_0044 at 43.145 kb on + strand, within Synpcc7942_0044 at 43.145 kb on + strand, within Synpcc7942_0044 at 43.145 kb on + strand, within Synpcc7942_0044 at 43.151 kb on + strand, within Synpcc7942_0044 at 43.151 kb on + strand, within Synpcc7942_0044 at 43.153 kb on - strand, within Synpcc7942_0044 at 43.169 kb on - strand, within Synpcc7942_0044 at 43.201 kb on + strand, within Synpcc7942_0044 at 43.209 kb on - strand, within Synpcc7942_0044 at 43.241 kb on + strand, within Synpcc7942_0044 at 43.244 kb on - strand, within Synpcc7942_0044 at 43.244 kb on - strand, within Synpcc7942_0044 at 43.258 kb on + strand, within Synpcc7942_0044 at 43.266 kb on - strand, within Synpcc7942_0044 at 43.266 kb on - strand, within Synpcc7942_0044 at 43.268 kb on + strand at 43.268 kb on + strand, within Synpcc7942_0044 at 43.268 kb on + strand, within Synpcc7942_0044 at 43.270 kb on + strand, within Synpcc7942_0044 at 43.275 kb on + strand at 43.283 kb on - strand at 43.285 kb on + strand at 43.305 kb on + strand at 43.325 kb on - strand at 43.336 kb on + strand at 43.361 kb on + strand at 43.384 kb on + strand at 43.384 kb on + strand at 43.392 kb on - strand at 43.416 kb on - strand at 43.448 kb on - strand at 43.471 kb on + strand at 43.471 kb on + strand at 43.471 kb on + strand at 43.473 kb on + strand at 43.473 kb on + strand at 43.473 kb on + strand at 43.479 kb on - strand at 43.481 kb on - strand at 43.487 kb on - strand at 43.539 kb on - strand at 43.567 kb on + strand at 43.567 kb on + strand at 43.572 kb on - strand at 43.575 kb on - strand at 43.584 kb on - strand at 43.588 kb on + strand at 43.588 kb on + strand at 43.596 kb on - strand at 43.616 kb on - strand at 43.624 kb on - strand at 43.626 kb on - strand at 43.699 kb on + strand at 43.708 kb on + strand, within Synpcc7942_0045 at 43.718 kb on + strand, within Synpcc7942_0045 at 43.745 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand, within Synpcc7942_0045 at 43.749 kb on + strand at 43.749 kb on + strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.757 kb on - strand, within Synpcc7942_0045 at 43.766 kb on + strand, within Synpcc7942_0045 at 43.768 kb on + strand, within Synpcc7942_0045 at 43.779 kb on - strand at 43.796 kb on - strand, within Synpcc7942_0045 at 43.852 kb on + strand, within Synpcc7942_0045 at 43.852 kb on - strand, within Synpcc7942_0045 at 43.871 kb on + strand, within Synpcc7942_0045 at 43.872 kb on - strand, within Synpcc7942_0045 at 43.872 kb on - strand, within Synpcc7942_0045 at 43.893 kb on + strand, within Synpcc7942_0045 at 43.893 kb on + strand, within Synpcc7942_0045 at 43.896 kb on - strand, within Synpcc7942_0045 at 43.909 kb on - strand, within Synpcc7942_0045 at 43.918 kb on - strand, within Synpcc7942_0045 at 43.922 kb on + strand at 43.922 kb on + strand, within Synpcc7942_0045 at 43.931 kb on - strand, within Synpcc7942_0045 at 43.992 kb on + strand, within Synpcc7942_0045 at 43.999 kb on + strand, within Synpcc7942_0045 at 43.999 kb on + strand, within Synpcc7942_0045 at 44.004 kb on + strand, within Synpcc7942_0045 at 44.032 kb on - strand, within Synpcc7942_0045 at 44.032 kb on - strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.034 kb on + strand, within Synpcc7942_0045 at 44.036 kb on + strand, within Synpcc7942_0045 at 44.036 kb on + strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.042 kb on - strand, within Synpcc7942_0045 at 44.044 kb on - strand, within Synpcc7942_0045 at 44.059 kb on + strand, within Synpcc7942_0045 at 44.067 kb on - strand, within Synpcc7942_0045 at 44.067 kb on - strand, within Synpcc7942_0045 at 44.067 kb on - strand, within Synpcc7942_0045 at 44.133 kb on + strand, within Synpcc7942_0045 at 44.138 kb on + strand, within Synpcc7942_0045 at 44.176 kb on - strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.290 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.322 kb on + strand, within Synpcc7942_0045 at 44.329 kb on + strand, within Synpcc7942_0045 at 44.330 kb on - strand, within Synpcc7942_0045 at 44.345 kb on + strand, within Synpcc7942_0045 at 44.454 kb on - strand, within Synpcc7942_0045 at 44.512 kb on + strand, within Synpcc7942_0045 at 44.582 kb on + strand, within Synpcc7942_0045 at 44.590 kb on - strand, within Synpcc7942_0045 at 44.641 kb on - strand, within Synpcc7942_0045 at 44.759 kb on + strand, within Synpcc7942_0045 at 44.759 kb on - strand, within Synpcc7942_0045 at 44.793 kb on + strand at 44.812 kb on - strand at 44.839 kb on - strand at 44.839 kb on - strand at 44.859 kb on - strand at 44.885 kb on + strand at 44.921 kb on + strand at 44.929 kb on - strand at 44.936 kb on - strand at 44.950 kb on + strand at 44.955 kb on + strand at 44.963 kb on - strand at 44.963 kb on - strand at 44.963 kb on - strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.018 kb on + strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.027 kb on + strand at 45.027 kb on - strand at 45.035 kb on - strand at 45.047 kb on - strand at 45.088 kb on + strand at 45.111 kb on - strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.113 kb on + strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.121 kb on - strand at 45.123 kb on + strand at 45.130 kb on - strand at 45.160 kb on + strand at 45.204 kb on - strand at 45.206 kb on + strand at 45.216 kb on - strand at 45.225 kb on + strand at 45.225 kb on + strand at 45.233 kb on - strand at 45.246 kb on - strand at 45.269 kb on - strand at 45.318 kb on + strand, within Synpcc7942_0046 at 45.385 kb on - strand, within Synpcc7942_0046 at 45.519 kb on - strand, within Synpcc7942_0046 at 45.604 kb on + strand, within Synpcc7942_0046 at 45.630 kb on + strand, within Synpcc7942_0046 at 45.679 kb on - strand, within Synpcc7942_0046 at 45.755 kb on + strand, within Synpcc7942_0046 at 45.887 kb on + strand, within Synpcc7942_0046 at 45.892 kb on + strand, within Synpcc7942_0046 at 45.910 kb on - strand, within Synpcc7942_0046 at 45.911 kb on - strand, within Synpcc7942_0046
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.000341796875 mg/ml remove 42,572 - Synpcc7942_0044 0.54 -1.0 42,579 - -0.0 42,581 + Synpcc7942_0044 0.55 +0.4 42,611 - Synpcc7942_0044 0.56 +2.1 42,668 + Synpcc7942_0044 0.59 -1.8 42,668 + Synpcc7942_0044 0.59 -2.0 42,668 + Synpcc7942_0044 0.59 -0.0 42,670 - Synpcc7942_0044 0.59 +0.4 42,671 - Synpcc7942_0044 0.59 -1.0 42,673 + Synpcc7942_0044 0.59 +1.1 42,799 + Synpcc7942_0044 0.66 +2.2 42,814 + Synpcc7942_0044 0.67 -1.3 42,848 + Synpcc7942_0044 0.68 +2.2 42,848 + Synpcc7942_0044 0.68 -2.5 42,868 - Synpcc7942_0044 0.69 +0.2 42,877 + Synpcc7942_0044 0.70 -1.0 42,888 + Synpcc7942_0044 0.70 +1.0 42,900 - Synpcc7942_0044 0.71 +0.6 42,901 + Synpcc7942_0044 0.71 +2.4 42,909 + Synpcc7942_0044 0.71 -1.9 42,932 + Synpcc7942_0044 0.72 +1.1 42,938 + Synpcc7942_0044 0.73 +0.7 42,938 + Synpcc7942_0044 0.73 -3.2 42,938 + Synpcc7942_0044 0.73 +2.8 42,938 + Synpcc7942_0044 0.73 -1.6 42,946 - Synpcc7942_0044 0.73 -1.3 42,946 - Synpcc7942_0044 0.73 -2.5 42,946 - Synpcc7942_0044 0.73 -1.3 42,946 - Synpcc7942_0044 0.73 +0.4 42,946 - Synpcc7942_0044 0.73 -2.3 42,946 - Synpcc7942_0044 0.73 +0.4 42,954 - Synpcc7942_0044 0.74 -2.3 42,978 - Synpcc7942_0044 0.75 -1.8 43,047 + Synpcc7942_0044 0.78 +2.0 43,053 + Synpcc7942_0044 0.79 +1.0 43,053 + Synpcc7942_0044 0.79 -2.0 43,086 + Synpcc7942_0044 0.80 +0.6 43,094 - Synpcc7942_0044 0.81 -0.0 43,094 - Synpcc7942_0044 0.81 -2.7 43,104 + Synpcc7942_0044 0.81 -1.2 43,119 + Synpcc7942_0044 0.82 +1.0 43,145 + Synpcc7942_0044 0.83 -1.4 43,145 + Synpcc7942_0044 0.83 +1.5 43,145 + Synpcc7942_0044 0.83 +1.0 43,151 + Synpcc7942_0044 0.84 +4.2 43,151 + Synpcc7942_0044 0.84 -0.6 43,153 - Synpcc7942_0044 0.84 +1.8 43,169 - Synpcc7942_0044 0.84 -2.0 43,201 + Synpcc7942_0044 0.86 +1.7 43,209 - Synpcc7942_0044 0.86 -2.2 43,241 + Synpcc7942_0044 0.88 -0.6 43,244 - Synpcc7942_0044 0.88 -0.6 43,244 - Synpcc7942_0044 0.88 +1.0 43,258 + Synpcc7942_0044 0.89 +2.5 43,266 - Synpcc7942_0044 0.89 -1.3 43,266 - Synpcc7942_0044 0.89 +2.6 43,268 + +5.6 43,268 + Synpcc7942_0044 0.89 -1.8 43,268 + Synpcc7942_0044 0.89 -0.0 43,270 + Synpcc7942_0044 0.90 -2.2 43,275 + -0.0 43,283 - +0.9 43,285 + +0.4 43,305 + +2.8 43,325 - +2.9 43,336 + -0.5 43,361 + +1.0 43,384 + +0.1 43,384 + +3.2 43,392 - +1.2 43,416 - -2.0 43,448 - +2.6 43,471 + -1.6 43,471 + -1.3 43,471 + -0.0 43,473 + -0.3 43,473 + +0.1 43,473 + +1.0 43,479 - +2.0 43,481 - +0.5 43,487 - -1.3 43,539 - -0.6 43,567 + -0.6 43,567 + +2.3 43,572 - -1.4 43,575 - -1.3 43,584 - +2.9 43,588 + -2.3 43,588 + +0.8 43,596 - -1.8 43,616 - +3.9 43,624 - +0.7 43,626 - -1.8 43,699 + +2.6 43,708 + Synpcc7942_0045 0.10 -0.7 43,718 + Synpcc7942_0045 0.11 -2.6 43,745 + Synpcc7942_0045 0.13 -1.8 43,749 + Synpcc7942_0045 0.13 +2.4 43,749 + Synpcc7942_0045 0.13 +3.5 43,749 + Synpcc7942_0045 0.13 -2.0 43,749 + Synpcc7942_0045 0.13 -0.0 43,749 + Synpcc7942_0045 0.13 +1.6 43,749 + Synpcc7942_0045 0.13 +2.2 43,749 + +1.0 43,749 + Synpcc7942_0045 0.13 -0.0 43,757 - Synpcc7942_0045 0.14 -0.9 43,757 - Synpcc7942_0045 0.14 -2.3 43,757 - Synpcc7942_0045 0.14 +0.3 43,757 - Synpcc7942_0045 0.14 +2.5 43,766 + Synpcc7942_0045 0.14 -2.0 43,768 + Synpcc7942_0045 0.14 +1.0 43,779 - -0.6 43,796 - Synpcc7942_0045 0.17 -1.0 43,852 + Synpcc7942_0045 0.21 +2.2 43,852 - Synpcc7942_0045 0.21 +2.4 43,871 + Synpcc7942_0045 0.22 +2.6 43,872 - Synpcc7942_0045 0.22 -1.3 43,872 - Synpcc7942_0045 0.22 +2.5 43,893 + Synpcc7942_0045 0.24 -1.3 43,893 + Synpcc7942_0045 0.24 +0.4 43,896 - Synpcc7942_0045 0.24 -2.0 43,909 - Synpcc7942_0045 0.25 -1.0 43,918 - Synpcc7942_0045 0.26 -1.3 43,922 + +1.0 43,922 + Synpcc7942_0045 0.26 +1.0 43,931 - Synpcc7942_0045 0.26 +5.6 43,992 + Synpcc7942_0045 0.31 -1.8 43,999 + Synpcc7942_0045 0.31 -0.0 43,999 + Synpcc7942_0045 0.31 -1.3 44,004 + Synpcc7942_0045 0.32 -1.0 44,032 - Synpcc7942_0045 0.34 +2.6 44,032 - Synpcc7942_0045 0.34 +0.3 44,034 + Synpcc7942_0045 0.34 -1.0 44,034 + Synpcc7942_0045 0.34 +1.6 44,034 + Synpcc7942_0045 0.34 -1.8 44,034 + Synpcc7942_0045 0.34 +0.5 44,034 + Synpcc7942_0045 0.34 +2.5 44,036 + Synpcc7942_0045 0.34 -2.3 44,036 + Synpcc7942_0045 0.34 -0.6 44,042 - Synpcc7942_0045 0.35 -1.0 44,042 - Synpcc7942_0045 0.35 +3.6 44,042 - Synpcc7942_0045 0.35 -0.2 44,042 - Synpcc7942_0045 0.35 -0.7 44,042 - Synpcc7942_0045 0.35 -1.3 44,044 - Synpcc7942_0045 0.35 +0.9 44,059 + Synpcc7942_0045 0.36 -0.0 44,067 - Synpcc7942_0045 0.37 +4.2 44,067 - Synpcc7942_0045 0.37 +3.5 44,067 - Synpcc7942_0045 0.37 -0.0 44,133 + Synpcc7942_0045 0.41 +2.0 44,138 + Synpcc7942_0045 0.42 -1.3 44,176 - Synpcc7942_0045 0.45 -0.2 44,290 + Synpcc7942_0045 0.53 -1.3 44,290 + Synpcc7942_0045 0.53 +2.3 44,322 + Synpcc7942_0045 0.55 -0.6 44,322 + Synpcc7942_0045 0.55 +0.4 44,329 + Synpcc7942_0045 0.56 +2.7 44,330 - Synpcc7942_0045 0.56 -0.6 44,345 + Synpcc7942_0045 0.57 -2.5 44,454 - Synpcc7942_0045 0.65 +1.6 44,512 + Synpcc7942_0045 0.69 +3.6 44,582 + Synpcc7942_0045 0.74 -0.5 44,590 - Synpcc7942_0045 0.75 +2.5 44,641 - Synpcc7942_0045 0.79 -0.8 44,759 + Synpcc7942_0045 0.88 +2.3 44,759 - Synpcc7942_0045 0.88 -0.6 44,793 + -0.6 44,812 - -0.3 44,839 - -1.6 44,839 - +1.4 44,859 - +2.5 44,885 + -2.2 44,921 + -0.4 44,929 - +3.0 44,936 - +2.4 44,950 + +1.8 44,955 + -0.0 44,963 - +0.6 44,963 - +3.0 44,963 - -0.7 45,018 + -1.0 45,018 + +1.0 45,018 + -1.6 45,018 + +1.0 45,018 + -0.0 45,026 - -0.6 45,026 - -0.5 45,026 - -2.6 45,027 + +0.7 45,027 - -2.3 45,035 - +0.5 45,047 - +3.8 45,088 + -0.7 45,111 - -1.6 45,113 + -1.3 45,113 + +0.4 45,113 + +0.8 45,113 + -2.3 45,113 + +3.1 45,113 + -0.6 45,121 - +1.6 45,121 - -2.0 45,121 - -0.0 45,121 - +1.0 45,123 + -2.2 45,130 - -0.1 45,160 + -0.6 45,204 - -1.8 45,206 + -2.5 45,216 - +4.4 45,225 + -0.0 45,225 + -2.0 45,233 - +1.0 45,246 - -2.9 45,269 - -3.3 45,318 + Synpcc7942_0046 0.11 +2.6 45,385 - Synpcc7942_0046 0.16 -2.0 45,519 - Synpcc7942_0046 0.26 -0.0 45,604 + Synpcc7942_0046 0.33 -0.6 45,630 + Synpcc7942_0046 0.35 -0.6 45,679 - Synpcc7942_0046 0.38 -2.5 45,755 + Synpcc7942_0046 0.44 -1.8 45,887 + Synpcc7942_0046 0.54 -1.6 45,892 + Synpcc7942_0046 0.54 -3.1 45,910 - Synpcc7942_0046 0.56 -0.6 45,911 - Synpcc7942_0046 0.56 +2.9
Or see this region's nucleotide sequence