Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34260

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34255 and RR42_RS34260 are separated by 112 nucleotidesRR42_RS34260 and RR42_RS34265 are separated by 109 nucleotidesRR42_RS34265 and RR42_RS34270 are separated by 52 nucleotides RR42_RS34255: RR42_RS34255 - aldehyde dehydrogenase, at 3,113,161 to 3,114,681 _RS34255 RR42_RS34260: RR42_RS34260 - Alcohol dehydrogenase (EC 1.1.1.1) (from data), at 3,114,794 to 3,115,822 _RS34260 RR42_RS34265: RR42_RS34265 - acetaldehyde dehydrogenase, at 3,115,932 to 3,116,324 _RS34265 RR42_RS34270: RR42_RS34270 - Fis family transcriptional regulator, at 3,116,377 to 3,118,302 _RS34270 Position (kb) 3114 3115 3116Strain fitness (log2 ratio) -1 0 1at 3113.875 kb on - strand, within RR42_RS34255at 3113.971 kb on + strand, within RR42_RS34255at 3114.101 kb on - strand, within RR42_RS34255at 3114.223 kb on + strand, within RR42_RS34255at 3114.224 kb on - strand, within RR42_RS34255at 3114.310 kb on + strand, within RR42_RS34255at 3114.310 kb on + strand, within RR42_RS34255at 3114.310 kb on + strand, within RR42_RS34255at 3114.310 kb on + strand, within RR42_RS34255at 3114.311 kb on - strand, within RR42_RS34255at 3114.311 kb on - strand, within RR42_RS34255at 3114.442 kb on + strand, within RR42_RS34255at 3114.442 kb on + strand, within RR42_RS34255at 3114.535 kb on + strandat 3114.536 kb on - strandat 3114.571 kb on + strandat 3114.571 kb on + strandat 3114.682 kb on + strandat 3115.001 kb on + strand, within RR42_RS34260at 3115.002 kb on - strand, within RR42_RS34260at 3115.002 kb on - strand, within RR42_RS34260at 3115.146 kb on - strand, within RR42_RS34260at 3115.172 kb on + strand, within RR42_RS34260at 3115.172 kb on + strand, within RR42_RS34260at 3115.173 kb on - strand, within RR42_RS34260at 3115.173 kb on - strand, within RR42_RS34260at 3115.173 kb on - strand, within RR42_RS34260at 3115.193 kb on + strand, within RR42_RS34260at 3115.353 kb on - strand, within RR42_RS34260at 3115.353 kb on - strand, within RR42_RS34260at 3115.642 kb on + strand, within RR42_RS34260at 3115.643 kb on - strand, within RR42_RS34260at 3116.148 kb on + strand, within RR42_RS34265at 3116.172 kb on - strand, within RR42_RS34265at 3116.203 kb on + strand, within RR42_RS34265at 3116.203 kb on + strand, within RR42_RS34265at 3116.204 kb on - strand, within RR42_RS34265at 3116.378 kb on + strandat 3116.378 kb on + strandat 3116.379 kb on - strandat 3116.379 kb on - strandat 3116.379 kb on - strandat 3116.399 kb on + strandat 3116.399 kb on + strandat 3116.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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3,113,875 - RR42_RS34255 0.47 +0.5
3,113,971 + RR42_RS34255 0.53 +0.2
3,114,101 - RR42_RS34255 0.62 +1.2
3,114,223 + RR42_RS34255 0.70 -1.5
3,114,224 - RR42_RS34255 0.70 -0.5
3,114,310 + RR42_RS34255 0.76 -0.5
3,114,310 + RR42_RS34255 0.76 -0.3
3,114,310 + RR42_RS34255 0.76 -0.7
3,114,310 + RR42_RS34255 0.76 +1.3
3,114,311 - RR42_RS34255 0.76 +1.5
3,114,311 - RR42_RS34255 0.76 -0.5
3,114,442 + RR42_RS34255 0.84 +0.1
3,114,442 + RR42_RS34255 0.84 -0.1
3,114,535 + +0.5
3,114,536 - +0.4
3,114,571 + +0.0
3,114,571 + +0.0
3,114,682 + -0.5
3,115,001 + RR42_RS34260 0.20 -1.6
3,115,002 - RR42_RS34260 0.20 -1.3
3,115,002 - RR42_RS34260 0.20 -0.7
3,115,146 - RR42_RS34260 0.34 -0.5
3,115,172 + RR42_RS34260 0.37 +0.7
3,115,172 + RR42_RS34260 0.37 -0.1
3,115,173 - RR42_RS34260 0.37 +0.3
3,115,173 - RR42_RS34260 0.37 +0.2
3,115,173 - RR42_RS34260 0.37 -0.7
3,115,193 + RR42_RS34260 0.39 -1.3
3,115,353 - RR42_RS34260 0.54 -1.4
3,115,353 - RR42_RS34260 0.54 -0.5
3,115,642 + RR42_RS34260 0.82 -1.6
3,115,643 - RR42_RS34260 0.83 -0.6
3,116,148 + RR42_RS34265 0.55 -0.1
3,116,172 - RR42_RS34265 0.61 -0.3
3,116,203 + RR42_RS34265 0.69 +0.3
3,116,203 + RR42_RS34265 0.69 -1.6
3,116,204 - RR42_RS34265 0.69 -1.5
3,116,378 + -0.4
3,116,378 + -0.7
3,116,379 - +0.3
3,116,379 - -0.1
3,116,379 - -0.1
3,116,399 + +0.2
3,116,399 + -1.4
3,116,407 - -0.3

Or see this region's nucleotide sequence