Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28115 and RR42_RS28120 are separated by 53 nucleotides RR42_RS28120 and RR42_RS28125 are separated by 57 nucleotides RR42_RS28125 and RR42_RS28130 are separated by 375 nucleotides
RR42_RS28115: RR42_RS28115 - phosphonate metabolism protein PhnM, at 1,666,144 to 1,667,385
_RS28115
RR42_RS28120: RR42_RS28120 - molybdenum cofactor biosysynthesis protein, at 1,667,439 to 1,667,969
_RS28120
RR42_RS28125: RR42_RS28125 - hypothetical protein, at 1,668,027 to 1,668,299
_RS28125
RR42_RS28130: RR42_RS28130 - N-acylglucosamine 2-epimerase, at 1,668,675 to 1,669,814
_RS28130
Position (kb)
1667
1668 Strain fitness (log2 ratio)
-1
0
1 at 1666.442 kb on - strand, within RR42_RS28115 at 1666.691 kb on - strand, within RR42_RS28115 at 1666.699 kb on + strand, within RR42_RS28115 at 1666.700 kb on - strand, within RR42_RS28115 at 1666.863 kb on + strand, within RR42_RS28115 at 1666.864 kb on - strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.958 kb on + strand, within RR42_RS28115 at 1666.959 kb on - strand, within RR42_RS28115 at 1667.060 kb on - strand, within RR42_RS28115 at 1667.256 kb on + strand, within RR42_RS28115 at 1667.256 kb on + strand, within RR42_RS28115 at 1667.256 kb on + strand, within RR42_RS28115 at 1667.257 kb on - strand, within RR42_RS28115 at 1667.450 kb on - strand at 1667.614 kb on + strand, within RR42_RS28120 at 1668.028 kb on + strand at 1668.028 kb on + strand at 1668.082 kb on - strand, within RR42_RS28125 at 1668.205 kb on + strand, within RR42_RS28125 at 1668.206 kb on - strand, within RR42_RS28125 at 1668.259 kb on - strand, within RR42_RS28125 at 1668.282 kb on + strand at 1668.282 kb on + strand at 1668.283 kb on - strand at 1668.506 kb on - strand at 1668.559 kb on - strand at 1668.627 kb on + strand at 1668.656 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 1,666,442 - RR42_RS28115 0.24 -0.3 1,666,691 - RR42_RS28115 0.44 +0.5 1,666,699 + RR42_RS28115 0.45 +0.1 1,666,700 - RR42_RS28115 0.45 -0.2 1,666,863 + RR42_RS28115 0.58 -1.7 1,666,864 - RR42_RS28115 0.58 -0.2 1,666,958 + RR42_RS28115 0.66 +1.2 1,666,958 + RR42_RS28115 0.66 -0.6 1,666,958 + RR42_RS28115 0.66 +0.1 1,666,958 + RR42_RS28115 0.66 +0.1 1,666,958 + RR42_RS28115 0.66 +0.4 1,666,959 - RR42_RS28115 0.66 -0.1 1,667,060 - RR42_RS28115 0.74 -0.1 1,667,256 + RR42_RS28115 0.90 +0.2 1,667,256 + RR42_RS28115 0.90 -0.4 1,667,256 + RR42_RS28115 0.90 -0.8 1,667,257 - RR42_RS28115 0.90 +0.4 1,667,450 - +0.3 1,667,614 + RR42_RS28120 0.33 -0.5 1,668,028 + +0.1 1,668,028 + +1.1 1,668,082 - RR42_RS28125 0.20 +0.4 1,668,205 + RR42_RS28125 0.65 +1.0 1,668,206 - RR42_RS28125 0.66 +0.3 1,668,259 - RR42_RS28125 0.85 +1.5 1,668,282 + +0.3 1,668,282 + +0.3 1,668,283 - +1.0 1,668,506 - +0.2 1,668,559 - +0.5 1,668,627 + +0.0 1,668,656 + -0.1
Or see this region's nucleotide sequence