Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27415

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27410 and RR42_RS27415 are separated by 125 nucleotidesRR42_RS27415 and RR42_RS27420 overlap by 4 nucleotidesRR42_RS27420 and RR42_RS27425 overlap by 4 nucleotides RR42_RS27410: RR42_RS27410 - hydroxyacid dehydrogenase, at 1,500,592 to 1,501,551 _RS27410 RR42_RS27415: RR42_RS27415 - microcin ABC transporter ATP-binding protein, at 1,501,677 to 1,503,272 _RS27415 RR42_RS27420: RR42_RS27420 - ABC transporter permease, at 1,503,269 to 1,504,111 _RS27420 RR42_RS27425: RR42_RS27425 - ABC transporter permease, at 1,504,108 to 1,505,082 _RS27425 Position (kb) 1501 1502 1503 1504Strain fitness (log2 ratio) -2 -1 0 1 2at 1500.856 kb on + strand, within RR42_RS27410at 1500.857 kb on - strand, within RR42_RS27410at 1501.188 kb on - strand, within RR42_RS27410at 1501.232 kb on + strand, within RR42_RS27410at 1501.233 kb on - strand, within RR42_RS27410at 1501.233 kb on - strand, within RR42_RS27410at 1501.233 kb on - strand, within RR42_RS27410at 1501.714 kb on + strandat 1502.088 kb on + strand, within RR42_RS27415at 1502.088 kb on + strand, within RR42_RS27415at 1502.155 kb on + strand, within RR42_RS27415at 1502.155 kb on + strand, within RR42_RS27415at 1502.156 kb on - strand, within RR42_RS27415at 1502.518 kb on + strand, within RR42_RS27415at 1502.518 kb on + strand, within RR42_RS27415at 1502.816 kb on - strand, within RR42_RS27415at 1502.824 kb on + strand, within RR42_RS27415at 1502.850 kb on + strand, within RR42_RS27415at 1502.851 kb on - strand, within RR42_RS27415at 1503.329 kb on - strandat 1503.329 kb on - strandat 1503.329 kb on - strandat 1503.421 kb on + strand, within RR42_RS27420at 1503.422 kb on - strand, within RR42_RS27420at 1503.422 kb on - strand, within RR42_RS27420at 1503.422 kb on - strand, within RR42_RS27420at 1503.424 kb on - strand, within RR42_RS27420at 1503.424 kb on - strand, within RR42_RS27420at 1503.424 kb on - strand, within RR42_RS27420at 1504.218 kb on - strand, within RR42_RS27425at 1504.218 kb on - strand, within RR42_RS27425

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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1,500,856 + RR42_RS27410 0.28 -0.8
1,500,857 - RR42_RS27410 0.28 +0.2
1,501,188 - RR42_RS27410 0.62 +0.4
1,501,232 + RR42_RS27410 0.67 -0.1
1,501,233 - RR42_RS27410 0.67 +2.4
1,501,233 - RR42_RS27410 0.67 +0.7
1,501,233 - RR42_RS27410 0.67 -1.6
1,501,714 + +0.4
1,502,088 + RR42_RS27415 0.26 +0.2
1,502,088 + RR42_RS27415 0.26 +1.3
1,502,155 + RR42_RS27415 0.30 -0.5
1,502,155 + RR42_RS27415 0.30 +0.5
1,502,156 - RR42_RS27415 0.30 +0.3
1,502,518 + RR42_RS27415 0.53 +0.4
1,502,518 + RR42_RS27415 0.53 +0.2
1,502,816 - RR42_RS27415 0.71 +0.2
1,502,824 + RR42_RS27415 0.72 +1.7
1,502,850 + RR42_RS27415 0.73 +0.4
1,502,851 - RR42_RS27415 0.74 -0.2
1,503,329 - +0.6
1,503,329 - +0.5
1,503,329 - -0.1
1,503,421 + RR42_RS27420 0.18 -1.0
1,503,422 - RR42_RS27420 0.18 -0.7
1,503,422 - RR42_RS27420 0.18 -0.3
1,503,422 - RR42_RS27420 0.18 -0.1
1,503,424 - RR42_RS27420 0.18 +1.0
1,503,424 - RR42_RS27420 0.18 -2.1
1,503,424 - RR42_RS27420 0.18 -1.0
1,504,218 - RR42_RS27425 0.11 +0.1
1,504,218 - RR42_RS27425 0.11 +0.4

Or see this region's nucleotide sequence