Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26730

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26715 and RR42_RS26720 overlap by 97 nucleotidesRR42_RS26720 and RR42_RS26725 overlap by 44 nucleotidesRR42_RS26725 and RR42_RS26730 are separated by 7 nucleotidesRR42_RS26730 and RR42_RS26735 are separated by 29 nucleotidesRR42_RS26735 and RR42_RS26740 are separated by 28 nucleotides RR42_RS26715: RR42_RS26715 - sulfonate ABC transporter substrate-binding protein, at 1,350,850 to 1,351,818 _RS26715 RR42_RS26720: RR42_RS26720 - hypothetical protein, at 1,351,722 to 1,351,940 _RS26720 RR42_RS26725: RR42_RS26725 - diguanylate cyclase, at 1,351,897 to 1,352,634 _RS26725 RR42_RS26730: RR42_RS26730 - Fe-S oxidoreductase, at 1,352,642 to 1,353,031 _RS26730 RR42_RS26735: RR42_RS26735 - hypothetical protein, at 1,353,061 to 1,353,630 _RS26735 RR42_RS26740: RR42_RS26740 - protein serine/threonine phosphatase, at 1,353,659 to 1,354,894 _RS26740 Position (kb) 1352 1353 1354Strain fitness (log2 ratio) -1 0 1at 1351.723 kb on + strandat 1351.723 kb on + strandat 1351.723 kb on + strandat 1351.723 kb on + strandat 1351.970 kb on + strandat 1351.994 kb on + strand, within RR42_RS26725at 1352.249 kb on - strand, within RR42_RS26725at 1352.476 kb on + strand, within RR42_RS26725at 1352.647 kb on + strandat 1352.742 kb on + strand, within RR42_RS26730at 1352.835 kb on + strand, within RR42_RS26730at 1352.836 kb on - strand, within RR42_RS26730at 1352.886 kb on + strand, within RR42_RS26730at 1352.917 kb on - strand, within RR42_RS26730at 1353.125 kb on + strand, within RR42_RS26735at 1353.413 kb on + strand, within RR42_RS26735at 1353.413 kb on + strand, within RR42_RS26735at 1353.554 kb on + strand, within RR42_RS26735at 1353.555 kb on - strand, within RR42_RS26735at 1353.602 kb on + strandat 1353.622 kb on - strandat 1353.639 kb on + strandat 1353.640 kb on - strandat 1353.642 kb on - strandat 1353.661 kb on - strandat 1353.726 kb on + strandat 1353.737 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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1,351,723 + +0.3
1,351,723 + +0.7
1,351,723 + -0.1
1,351,723 + +0.1
1,351,970 + -0.1
1,351,994 + RR42_RS26725 0.13 -0.2
1,352,249 - RR42_RS26725 0.48 +1.7
1,352,476 + RR42_RS26725 0.78 +0.2
1,352,647 + -0.1
1,352,742 + RR42_RS26730 0.26 +0.2
1,352,835 + RR42_RS26730 0.49 +0.5
1,352,836 - RR42_RS26730 0.50 +0.7
1,352,886 + RR42_RS26730 0.63 +1.5
1,352,917 - RR42_RS26730 0.71 -0.3
1,353,125 + RR42_RS26735 0.11 +0.5
1,353,413 + RR42_RS26735 0.62 -0.2
1,353,413 + RR42_RS26735 0.62 +0.2
1,353,554 + RR42_RS26735 0.86 -0.0
1,353,555 - RR42_RS26735 0.87 +0.6
1,353,602 + +0.6
1,353,622 - -0.1
1,353,639 + +0.7
1,353,640 - -0.7
1,353,642 - -0.8
1,353,661 - +0.3
1,353,726 + -0.8
1,353,737 + -1.2

Or see this region's nucleotide sequence