Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26430 and RR42_RS26435 are separated by 9 nucleotides RR42_RS26435 and RR42_RS26440 are separated by 74 nucleotides RR42_RS26440 and RR42_RS26445 overlap by 1 nucleotides RR42_RS26445 and RR42_RS26450 are separated by 12 nucleotides
RR42_RS26430: RR42_RS26430 - ferredoxin reductase, at 1,286,370 to 1,287,656
_RS26430
RR42_RS26435: RR42_RS26435 - ferredoxin, at 1,287,666 to 1,287,983
_RS26435
RR42_RS26440: RR42_RS26440 - ABC transporter permease, at 1,288,058 to 1,289,116
_RS26440
RR42_RS26445: RR42_RS26445 - ABC transporter permease, at 1,289,116 to 1,290,000
_RS26445
RR42_RS26450: RR42_RS26450 - histidinol dehydrogenase, at 1,290,013 to 1,290,723
_RS26450
Position (kb) 1288
1289
1290 Strain fitness (log2 ratio) -1
0
1 at 1287.353 kb on - strand, within RR42_RS26430 at 1287.529 kb on + strand at 1287.824 kb on - strand, within RR42_RS26435 at 1287.844 kb on + strand, within RR42_RS26435 at 1287.896 kb on - strand, within RR42_RS26435 at 1288.250 kb on - strand, within RR42_RS26440 at 1288.641 kb on + strand, within RR42_RS26440 at 1288.644 kb on + strand, within RR42_RS26440 at 1288.645 kb on - strand, within RR42_RS26440 at 1288.752 kb on + strand, within RR42_RS26440 at 1288.753 kb on - strand, within RR42_RS26440 at 1289.118 kb on - strand at 1289.204 kb on + strand at 1289.507 kb on + strand, within RR42_RS26445 at 1289.507 kb on + strand, within RR42_RS26445 at 1289.508 kb on - strand, within RR42_RS26445 at 1289.699 kb on + strand, within RR42_RS26445 at 1289.799 kb on - strand, within RR42_RS26445 at 1289.881 kb on - strand, within RR42_RS26445 at 1289.881 kb on - strand, within RR42_RS26445 at 1289.928 kb on - strand at 1289.928 kb on - strand at 1289.984 kb on - strand at 1290.014 kb on + strand at 1290.105 kb on - strand, within RR42_RS26450
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 1,287,353 - RR42_RS26430 0.76 -0.6 1,287,529 + +0.1 1,287,824 - RR42_RS26435 0.50 -0.9 1,287,844 + RR42_RS26435 0.56 +0.8 1,287,896 - RR42_RS26435 0.72 +1.0 1,288,250 - RR42_RS26440 0.18 +0.3 1,288,641 + RR42_RS26440 0.55 +0.8 1,288,644 + RR42_RS26440 0.55 +0.3 1,288,645 - RR42_RS26440 0.55 +1.0 1,288,752 + RR42_RS26440 0.66 -0.4 1,288,753 - RR42_RS26440 0.66 +0.6 1,289,118 - +1.4 1,289,204 + +0.8 1,289,507 + RR42_RS26445 0.44 -0.3 1,289,507 + RR42_RS26445 0.44 -0.3 1,289,508 - RR42_RS26445 0.44 -0.4 1,289,699 + RR42_RS26445 0.66 -0.5 1,289,799 - RR42_RS26445 0.77 +1.4 1,289,881 - RR42_RS26445 0.86 +0.1 1,289,881 - RR42_RS26445 0.86 -1.4 1,289,928 - -0.1 1,289,928 - +0.9 1,289,984 - +0.1 1,290,014 + +0.9 1,290,105 - RR42_RS26450 0.13 +1.1
Or see this region's nucleotide sequence