Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26435

Experiment: R2A with Chloride 300 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS26430 and RR42_RS26435 are separated by 9 nucleotidesRR42_RS26435 and RR42_RS26440 are separated by 74 nucleotides RR42_RS26430: RR42_RS26430 - ferredoxin reductase, at 1,286,370 to 1,287,656 _RS26430 RR42_RS26435: RR42_RS26435 - ferredoxin, at 1,287,666 to 1,287,983 _RS26435 RR42_RS26440: RR42_RS26440 - ABC transporter permease, at 1,288,058 to 1,289,116 _RS26440 Position (kb) 1287 1288Strain fitness (log2 ratio) -1 0 1at 1287.353 kb on - strand, within RR42_RS26430at 1287.529 kb on + strandat 1287.824 kb on - strand, within RR42_RS26435at 1287.844 kb on + strand, within RR42_RS26435at 1287.896 kb on - strand, within RR42_RS26435at 1288.250 kb on - strand, within RR42_RS26440at 1288.641 kb on + strand, within RR42_RS26440at 1288.644 kb on + strand, within RR42_RS26440at 1288.645 kb on - strand, within RR42_RS26440at 1288.752 kb on + strand, within RR42_RS26440at 1288.753 kb on - strand, within RR42_RS26440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
remove
1,287,353 - RR42_RS26430 0.76 -0.6
1,287,529 + +0.1
1,287,824 - RR42_RS26435 0.50 -0.9
1,287,844 + RR42_RS26435 0.56 +0.8
1,287,896 - RR42_RS26435 0.72 +1.0
1,288,250 - RR42_RS26440 0.18 +0.3
1,288,641 + RR42_RS26440 0.55 +0.8
1,288,644 + RR42_RS26440 0.55 +0.3
1,288,645 - RR42_RS26440 0.55 +1.0
1,288,752 + RR42_RS26440 0.66 -0.4
1,288,753 - RR42_RS26440 0.66 +0.6

Or see this region's nucleotide sequence